Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010665

Physical Location & Seq

Genomic Coordinates Forward (+)

15831161 .. 15834972

Gene Structure 3812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14490.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCAGACCTAGACCGGCAAATAGAGCAGCTGAAGAAGTGCGAGCCTCTCAAAGAGCCGGAGGTGAAGGCTCTCTGCCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGCAACGTTCAGAGAGTCGATGCTCCTGTCACTATATGCGGCGACATCCATGGGCAATTCTATGACATGAAAGAGCTTTTCAAAGTAGGAGGTGATTGCCCGAAGACTAACTACTTGTTTCTTGGAGATTTTGTTGACAGAGGATTCTATTCCGTTGAGACATTTCTACTCCTACTTGCCCTTAAGGTTAGATATCCAGATCGGATAACTCTTATTAGAGGAAACCACGAGAGCCGTCAGATCACACAGGTGTATGGATTCTACGATGAATGTCTACGAAAGTATGGATCCGTCAATGTTTGGAGATATTGCACGGATATATTCGATTATCTGAGTCTGTCAGCTCTCATCGAAAATAAGATTTTCAGTGTACATGGTGGTCTCTCTCCTGCCATTACAACCCTGGATCAGATACGAACAATTGATAGGAAGCAAGAAGTACCTCATGATGGTGGCATGTGTGACCTACTTTGGTCAGATCCTGAAGATATCGTGGACGGTTGGGGTTTGAGTCCGCGTGGTGCTGGGTACCTCTTTGGTGGCAGTGTTGTTACCTCATTTAACCATGCAAACAACATTGACTATATATGCCGTGCCCATCAGTTGGTAATGGAAGGGTATAAATGGATGTTCAATAACCAGATAGTAACTGTCTGGTCAGCACCAAATTACTGTTACAGATGTGGTAATGTAGCTGCAATTCTTGAGCTGGATGAAAATCTTAATAAGCAGTTTCGTGTCTTTGATGCTGCTCCACAGGAGTCAAGAGGCGCGCCTGCCAAGAAACCTGCACCAGACTACTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04922 map04922

Pfam Domains

Protein Families

Metallophos

Protein Analysis

306

Amino Acids

34.76

Weight (kDa)

5.24

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55260 AT5G55260
fragaria_vesca	FvH4_3g23620
malus_domestica	MD03G1192600.v1.1 MD11G1209100.v1.1
prunus_persica	Prupe.4G224600_v2.0.a1 Prupe.4G224600_v2.0.a1
pyrus_communis	pycom03g14490 pycom11g18400
rosa_chinensis	RchiOBHm_Chr5g0041641
rosa_laevigata	RLG00000034087
rosa_multiflora	Rmu_sc0000861.1_g000015 Rmu_sc0011648.1_g000007
rosa_roxburghii	Rroxscaffold_1G00038850
rosa_rugosa	Rorug05G0194400
rosa_samantha	Rh5AG279800 Rh5BG285200 Rh5CG317200 Rh5DG294000
rosa_wichuraiana	Rw5G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	904
Acc65I	GGTACC	1 cut(s)	636
AccB1I	GGYRCC	1 cut(s)	636
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccI	GTMKAC	1 cut(s)	382
AccII	CGCG	2 cut(s)	625, 881
AciI	CCGC	2 cut(s)	147, 623
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	4 cut(s)	390, 403, 522, 581
AcuI	CTGAAG	2 cut(s)	53, 612
AfaI	GTAC	3 cut(s)	480, 549, 638
AfiI	CCNNNNNNNGG	2 cut(s)	557, 712
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	190, 742
AjnI	CCWGG	1 cut(s)	510
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	5 cut(s)	31, 184, 452, 803, 817
AluI	AGCT	5 cut(s)	31, 184, 452, 803, 817
Alw26I	GTCTC	2 cut(s)	260, 494
AlwI	GGATC	4 cut(s)	390, 403, 522, 581
AlwNI	CAGNNNCTG	1 cut(s)	590
ApeKI	GCWGC	3 cut(s)	28, 803, 857
AscI	GGCGCGCC	1 cut(s)	879
Asp718I	GGTACC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	881, 883
AsuHPI	GGTGA	2 cut(s)	76, 212
BaeGI	GKGCMC	1 cut(s)	706
BamHI	GGATCC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	636
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	40, 790, 844
BccI	CCATC	2 cut(s)	551, 714
BceAI	ACGGC	2 cut(s)	327, 684
BciT130I	CCWGG	1 cut(s)	512
BcoDI	GTCTC	2 cut(s)	260, 494
BfaI	CTAG	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	904
BisI	GCNGC	4 cut(s)	29, 148, 804, 858
BlsI	GCNGC	4 cut(s)	30, 149, 805, 859
Bme1390I	CCNGG	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	397, 638
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	118, 844
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	833
BsaBI	GATNNNNATC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	3 cut(s)	87, 157, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 712
Bse118I	RCCGGY	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	825
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	3 cut(s)	87, 157, 510
BseGI	GGATG	3 cut(s)	153, 741, 826
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	2 cut(s)	557, 712
BseMII	CTCAG	1 cut(s)	431
BsePI	GCGCGC	1 cut(s)	879
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	3 cut(s)	40, 790, 844
BseYI	CCCAGC	1 cut(s)	632
BsgI	GTGCAG	1 cut(s)	882
Bsh1236I	CGCG	2 cut(s)	625, 881
BshNI	GGYRCC	1 cut(s)	636
BsiSI	CCGG	2 cut(s)	16, 59
BslI	CCNNNNNNNGG	2 cut(s)	557, 712
BsmAI	GTCTC	2 cut(s)	260, 494
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp1407I	TGTACA	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	307, 348, 395, 514, 586
Bsp19I	CCATGG	2 cut(s)	87, 157
BspACI	CCGC	2 cut(s)	147, 623
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	2 cut(s)	625, 881
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	2 cut(s)	397, 638
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	4 cut(s)	390, 403, 522, 581
BspT107I	GGYRCC	1 cut(s)	636
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	15
BsrGI	TGTACA	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	3 cut(s)	87, 157, 510
BssHII	GCGCGC	1 cut(s)	879
BssMI	GATC	5 cut(s)	307, 348, 395, 514, 586
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	2 cut(s)	87, 157
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	608, 760, 782
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	478
BstC8I	GCNNGC	3 cut(s)	44, 881, 885
BstDEI	CTNAG	1 cut(s)	440
BstDSI	CCRYGG	2 cut(s)	87, 157
BstF5I	GGATG	3 cut(s)	153, 741, 826
BstFNI	CGCG	2 cut(s)	625, 881
BstHHI	GCGC	2 cut(s)	881, 883
BstKTI	GATC	5 cut(s)	310, 351, 398, 517, 589
BstMAI	GTCTC	2 cut(s)	260, 494
BstMBI	GATC	5 cut(s)	307, 348, 395, 514, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	1 cut(s)	510
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	2 cut(s)	625, 881
BstV1I	GCAGC	3 cut(s)	40, 790, 844
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	395, 586
BstYI	RGATCY	2 cut(s)	395, 586
BtgI	CCRYGG	2 cut(s)	87, 157
BtsCI	GGATG	3 cut(s)	153, 741, 826
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	2 cut(s)	481, 658
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	3 cut(s)	44, 881, 885
CaiI	CAGNNNCTG	1 cut(s)	590
CciI	TCATGA	1 cut(s)	553
CfoI	GCGC	2 cut(s)	881, 883
Cfr10I	RCCGGY	1 cut(s)	15
Csp6I	GTAC	3 cut(s)	479, 548, 637
CviAII	CATG	7 cut(s)	88, 158, 175, 482, 554, 565, 674
CviQI	GTAC	3 cut(s)	479, 548, 637
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	5 cut(s)	309, 350, 397, 516, 588
DpnII	GATC	5 cut(s)	307, 348, 395, 514, 586
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	87, 157
Eco31I	GGTCTC	1 cut(s)	494
Eco32I	GATATC	2 cut(s)	302, 598
Eco57I	CTGAAG	2 cut(s)	53, 612
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	2 cut(s)	302, 598
EcoT14I	CCWWGG	2 cut(s)	87, 157
ErhI	CCWWGG	2 cut(s)	87, 157
FaeI	CATG	7 cut(s)	91, 161, 178, 485, 557, 568, 677
FatI	CATG	7 cut(s)	87, 157, 174, 481, 553, 564, 673
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	4 cut(s)	29, 148, 804, 858
FokI	GGATG	3 cut(s)	140, 748, 833
Fsp4HI	GCNGC	4 cut(s)	29, 148, 804, 858
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	2 cut(s)	880, 882
GluI	GCNGC	4 cut(s)	29, 148, 804, 858
GsaI	CCCAGC	1 cut(s)	636
HapII	CCGG	2 cut(s)	16, 59
HhaI	GCGC	2 cut(s)	881, 883
Hin1II	CATG	7 cut(s)	91, 161, 178, 485, 557, 568, 677
Hin6I	GCGC	2 cut(s)	879, 881
HinP1I	GCGC	2 cut(s)	879, 881
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	6 cut(s)	123, 252, 366, 442, 619, 869
HpaII	CCGG	2 cut(s)	16, 59
HphI	GGTGA	2 cut(s)	76, 212
Hpy166II	GTNNAC	4 cut(s)	244, 383, 479, 604
Hpy188I	TCNGA	8 cut(s)	7, 120, 312, 348, 441, 519, 586, 917
Hpy188III	TCNNGA	5 cut(s)	305, 554, 590, 812, 873
Hpy8I	GTNNAC	4 cut(s)	244, 383, 479, 604
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	61, 716
HpyCH4III	ACNGT	3 cut(s)	608, 760, 782
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	420, 677, 806, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	440
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	7 cut(s)	91, 161, 178, 485, 557, 568, 677
HspAI	GCGC	2 cut(s)	879, 881
KpnI	GGTACC	1 cut(s)	640
Kzo9I	GATC	5 cut(s)	307, 348, 395, 514, 586
LmnI	GCTCC	2 cut(s)	136, 865
Lsp1109I	GCAGC	3 cut(s)	40, 790, 844
LweI	GCATC	2 cut(s)	118, 844
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	5 cut(s)	136, 569, 658, 754, 782
MalI	GATC	5 cut(s)	309, 350, 397, 516, 588
MboI	GATC	5 cut(s)	307, 348, 395, 514, 586
MboII	GAAGA	4 cut(s)	46, 116, 223, 605
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	2 cut(s)	395, 586
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	4 cut(s)	164, 528, 775, 807
MlyI	GAGTC	4 cut(s)	132, 451, 628, 878
MseI	TTAA	3 cut(s)	291, 669, 831
MslI	CAYNNNNRTG	2 cut(s)	356, 558
MspA1I	CMGCKG	1 cut(s)	31
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	16, 59
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	512
MvnI	CGCG	2 cut(s)	625, 881
MwoI	GCNNNNNNNGC	1 cut(s)	25
NcoI	CCATGG	2 cut(s)	87, 157
NdeII	GATC	5 cut(s)	307, 348, 395, 514, 586
NlaIII	CATG	7 cut(s)	91, 161, 178, 485, 557, 568, 677
NlaIV	GGNNCC	2 cut(s)	397, 638
NmuCI	GTSAC	2 cut(s)	136, 569
NspI	RCATGY	1 cut(s)	568
OliI	CACNNNNGTG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	553
PalAI	GGCGCGCC	1 cut(s)	879
PauI	GCGCGC	1 cut(s)	879
PfeI	GAWTC	2 cut(s)	252, 366
PflMI	CCANNNNNTGG	1 cut(s)	712
PkrI	GCNGC	4 cut(s)	30, 149, 805, 859
PleI	GAGTC	4 cut(s)	131, 450, 627, 877
PpsI	GAGTC	4 cut(s)	131, 450, 627, 877
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	397, 638
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	395, 586
PteI	GCGCGC	1 cut(s)	879
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	480, 549, 638
RsaNI	GTAC	3 cut(s)	479, 548, 637
RseI	CAYNNNNRTG	2 cut(s)	356, 558
SaqAI	TTAA	3 cut(s)	291, 669, 831
SatI	GCNGC	4 cut(s)	29, 148, 804, 858
Sau3AI	GATC	5 cut(s)	307, 348, 395, 514, 586
SchI	GAGTC	4 cut(s)	132, 451, 628, 878
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	2 cut(s)	118, 844
SgsI	GGCGCGCC	1 cut(s)	879
SmiMI	CAYNNNNRTG	2 cut(s)	356, 558
SmlI	CTYRAG	2 cut(s)	290, 812
SmoI	CTYRAG	2 cut(s)	290, 812
Sse9I	AATT	4 cut(s)	164, 528, 775, 807
SsiI	CCGC	2 cut(s)	147, 623
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	2 cut(s)	87, 157
TaaI	ACNGT	3 cut(s)	608, 760, 782
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	102, 126, 432, 459
TasI	AATT	4 cut(s)	164, 528, 775, 807
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	252, 366
Tru1I	TTAA	3 cut(s)	291, 669, 831
Tru9I	TTAA	3 cut(s)	291, 669, 831
TscAI	CASTG	2 cut(s)	481, 658
TseFI	GTSAC	2 cut(s)	136, 569
TseI	GCWGC	3 cut(s)	28, 803, 857
Tsp45I	GTSAC	2 cut(s)	136, 569
TspDTI	ATGAA	3 cut(s)	191, 390, 837
TspGWI	ACGGA	3 cut(s)	250, 388, 437
TspRI	CASTG	2 cut(s)	481, 658
Van91I	CCANNNNNTGG	1 cut(s)	712
Vha464I	CTTAAG	1 cut(s)	290
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.