Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010665

Physical Location & Seq

Genomic Coordinates Forward (+)

20557740 .. 20561067

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g18400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCAGACCTAGACCGGCAAATAGAACAGCTGAAGAAGTGCGAGCCTCTCAAAGAGTCGGAGGTGAAGGCTCTCTGCCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGCAACGTTCAGAGAGTCGATGCTCCTGTCACTATATGCGGTGACATCCACGGGCAGTTTTATGACATGAAAGAGCTTTTCAAAGTAGGAGGTGATTGCCCGAAGACCAACTACTTGTTTCTTGGAGATTTTGTTGACAGAGGATTTTATTCTGTTGAGACATTTCTACTCCTACTTGCCCTGAAGGTGTATGGATTCTACGATGAATGTCTACGAAAGTATGGATCCGTCAATGTTTGGAGATATTGCACAGATATATTCGATTATCTGAGTCTGTCAGCTCTCATTGAAAATAAGATTTTCAGCGTACATGGTGGTCTCTCTCCTGCCATTACAGCTCTGGATCAGATACGAACAATTGATAGGAAGCAAGAAGTACCTCATGATGGTGGCATGTGTGACCTACTATGGTCGATCCTGAAGATATCGTGGACGGTTGGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04922 map04922

Pfam Domains

Protein Families

Metallophos

Protein Analysis

185

Amino Acids

20.92

Weight (kDa)

4.99

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55260 AT5G55260
fragaria_vesca	FvH4_3g23620
malus_domestica	MD03G1192600.v1.1 MD11G1209100.v1.1
prunus_persica	Prupe.4G224600_v2.0.a1 Prupe.4G224600_v2.0.a1
pyrus_communis	pycom03g14490 pycom11g18400
rosa_chinensis	RchiOBHm_Chr5g0041641
rosa_laevigata	RLG00000034087
rosa_multiflora	Rmu_sc0000861.1_g000015 Rmu_sc0011648.1_g000007
rosa_roxburghii	Rroxscaffold_1G00038850
rosa_rugosa	Rorug05G0194400
rosa_samantha	Rh5AG279800 Rh5BG285200 Rh5CG317200 Rh5DG294000
rosa_wichuraiana	Rw5G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	319
AciI	CCGC	1 cut(s)	147
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	4 cut(s)	327, 340, 459, 517
AcuI	CTGAAG	3 cut(s)	53, 311, 548
AfaI	GTAC	2 cut(s)	417, 486
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	190, 398
AluBI	AGCT	4 cut(s)	31, 184, 389, 446
AluI	AGCT	4 cut(s)	31, 184, 389, 446
Alw26I	GTCTC	2 cut(s)	260, 431
AlwI	GGATC	4 cut(s)	327, 340, 459, 517
AsuHPI	GGTGA	3 cut(s)	76, 161, 212
BamHI	GGATCC	1 cut(s)	332
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbsI	GAAGAC	1 cut(s)	218
BccI	CCATC	1 cut(s)	488
BcoDI	GTCTC	2 cut(s)	260, 431
BfaI	CTAG	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	334
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	87, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse118I	RCCGGY	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	87, 157
BseGI	GGATG	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	2 cut(s)	260, 431
Bso31I	GGTCTC	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	332, 451, 522
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	334
BspPI	GGATC	4 cut(s)	327, 340, 459, 517
BspTNI	GGTCTC	1 cut(s)	431
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	87, 157
BssMI	GATC	3 cut(s)	332, 451, 522
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	544
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	377
BstDSI	CCRYGG	2 cut(s)	87, 157
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	3 cut(s)	335, 454, 525
BstMAI	GTCTC	2 cut(s)	260, 431
BstMBI	GATC	3 cut(s)	332, 451, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNSI	RCATGY	1 cut(s)	505
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BtgI	CCRYGG	2 cut(s)	87, 157
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	416, 485
CviAII	CATG	5 cut(s)	88, 175, 419, 491, 502
CviJI	RGCY	7 cut(s)	31, 46, 71, 86, 184, 389, 446
CviKI_1	RGCY	7 cut(s)	31, 46, 71, 86, 184, 389, 446
CviQI	GTAC	2 cut(s)	416, 485
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	3 cut(s)	334, 453, 524
DpnII	GATC	3 cut(s)	332, 451, 522
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	534
Eco57I	CTGAAG	3 cut(s)	53, 311, 548
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	91, 178, 422, 494, 505
FatI	CATG	5 cut(s)	87, 174, 418, 490, 501
FblI	GTMKAC	1 cut(s)	319
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	1 cut(s)	11
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	5 cut(s)	91, 178, 422, 494, 505
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	4 cut(s)	56, 123, 303, 379
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	3 cut(s)	76, 161, 212
Hpy166II	GTNNAC	3 cut(s)	244, 320, 540
Hpy188I	TCNGA	5 cut(s)	7, 61, 120, 378, 456
Hpy188III	TCNNGA	3 cut(s)	449, 491, 526
Hpy8I	GTNNAC	3 cut(s)	244, 320, 540
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	61, 286
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	5 cut(s)	91, 178, 422, 494, 505
Kzo9I	GATC	3 cut(s)	332, 451, 522
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	6 cut(s)	29, 147, 302, 434, 447, 539
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	3 cut(s)	136, 149, 506
MalI	GATC	3 cut(s)	334, 453, 524
MboI	GATC	3 cut(s)	332, 451, 522
MboII	GAAGA	4 cut(s)	46, 116, 223, 541
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	1 cut(s)	465
MlyI	GAGTC	3 cut(s)	65, 132, 388
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	7 cut(s)	55, 57, 89, 107, 191, 242, 498
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	16
MunI	CAATTG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	332, 451, 522
NlaIII	CATG	5 cut(s)	91, 178, 422, 494, 505
NlaIV	GGNNCC	1 cut(s)	334
NmuCI	GTSAC	3 cut(s)	136, 149, 506
NspI	RCATGY	1 cut(s)	505
PagI	TCATGA	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	303
PleI	GAGTC	3 cut(s)	64, 131, 387
PpsI	GAGTC	3 cut(s)	64, 131, 387
Psp1406I	AACGTT	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	417, 486
RsaNI	GTAC	2 cut(s)	416, 485
RseI	CAYNNNNRTG	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	332, 451, 522
SchI	GAGTC	3 cut(s)	65, 132, 388
SfaNI	GCATC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	1 cut(s)	465
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	544
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	102, 126, 369, 521
TasI	AATT	1 cut(s)	465
TfiI	GAWTC	1 cut(s)	303
TseFI	GTSAC	3 cut(s)	136, 149, 506
Tsp45I	GTSAC	3 cut(s)	136, 149, 506
TspDTI	ATGAA	2 cut(s)	191, 327
TspGWI	ACGGA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	319
XspI	CTAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.