Rh5AG279800

Protein phosphatase 2A homologues, catalytic domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010665
Physical Location & Seq
Reverse (-)
37881568 .. 37885343
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG279800.1

Sequence Viewer

Length: 921 bp
ATGTCTTCTGACCTAGACAGGCAAATAGAGCAGCTCAAGAAATGCGAGCCTCTCAAAGAGTCCGAAGTGAAGGCTCTCTGCCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGCAACGTCCAGAGAGTCGATGCTCCTGTCACTATTTGTGGTGACATCCATGGTCAGTTTTATGACATGAAAGAGCTTTTCAAAGTGGGAGGCGATTGCCCAAAGACTAACTACTTGTTTCTTGGAGATTTCGTTGACAGAGGATTCTATTCAGTGGAGACATTTCTACTCCTACTTGCCCTGAAGGTGAGATATCCAGATCGGATAACACTCATTAGAGGGAACCATGAGAGTCGACAGATAACACAGGTATATGGATTCTATGATGAGTGTCTACGAAAATATGGATCTGTCAATGTTTGGAGATATTGCACTGATATATTCGATTACCTAAGTCTGTCAGCTCTTATTGAGAATAAGATTTTCAGTGTCCATGGTGGTCTCTCTCCTGCCATTTCAACTTTGGATCAGATACGAACAATTGACCGTAAGCAAGAAGTACCTCATGATGGTGCTATGTGTGACCTACTATGGTCAGATCCTGAAGATATTGTGGATGGTTGGGGTTTGAGCCCACGTGGTGCTGGTTTCCTGTTCGGTGGCAGTGTTGTTTCTTCATTTAACCATGCAAACAACATTGACTATATATGTCGTGCCCATCAGTTGGTGATGGAAGGGTATAAATGGATGTTCAATAATCAGATTGTTACTGTATGGTCGGCTCCAAATTACTGTTACAGATGTGGTAATGTAGCTGCAATCCTTGAGCTGGATGAAAATCTTAACAAGCAGTTCCGAGTCTTCGATGCTGCCCCACAGGAATCAAGAGGCACGCCAGCCAAAAAACCTGCACCGGACTACTTTCTATGA

Protein Analysis

306

Amino Acids

34.83

Weight (kDa)

5.24

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 46 - 240 5.1e-48 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010665)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55260 AT5G55260
fragaria_vesca FvH4_3g23620
malus_domestica MD03G1192600.v1.1 MD11G1209100.v1.1
prunus_persica Prupe.4G224600_v2.0.a1 Prupe.4G224600_v2.0.a1
pyrus_communis pycom03g14490 pycom11g18400
rosa_chinensis RchiOBHm_Chr5g0041641
rosa_laevigata RLG00000034087
rosa_multiflora Rmu_sc0000861.1_g000015 Rmu_sc0011648.1_g000007
rosa_roxburghii Rroxscaffold_1G00038850
rosa_rugosa Rorug05G0194400
rosa_samantha Rh5AG279800 Rh5BG285200 Rh5CG317200 Rh5DG294000
rosa_wichuraiana Rw5G026340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 907
AccB7I CCANNNNNTGG 1 cut(s) 715
AccI GTMKAC 2 cut(s) 346, 385
AclWI GGATC 3 cut(s) 406, 525, 584
AcuI CTGAAG 2 cut(s) 314, 615
AcvI CACGTG 1 cut(s) 629
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 3 cut(s) 560, 715, 820
AgsI TTSAA 3 cut(s) 193, 510, 745
AluBI AGCT 5 cut(s) 34, 187, 455, 806, 820
AluI AGCT 5 cut(s) 34, 187, 455, 806, 820
Alw26I GTCTC 2 cut(s) 263, 497
AlwI GGATC 3 cut(s) 406, 525, 584
AlwNI CAGNNNCTG 1 cut(s) 593
ApeKI GCWGC 3 cut(s) 31, 806, 860
AsuHPI GGTGA 3 cut(s) 164, 310, 730
BaeGI GKGCMC 1 cut(s) 709
BanII GRGCYC 1 cut(s) 626
BbrPI CACGTG 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 844
BbvI GCAGC 3 cut(s) 43, 793, 847
BccI CCATC 4 cut(s) 554, 602, 715, 717
BcoDI GTCTC 2 cut(s) 263, 497
BfaI CTAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 907
BisI GCNGC 3 cut(s) 32, 807, 861
BlsI GCNGC 3 cut(s) 33, 808, 862
BmiI GGNNCC 2 cut(s) 335, 774
BmsI GCATC 2 cut(s) 121, 847
BpiI GAAGAC 1 cut(s) 844
BpuEI CTTGAG 2 cut(s) 20, 836
BsaAI YACGTR 1 cut(s) 629
BsaBI GATNNNNATC 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 90, 160, 484
BsaWI WCCGGW 1 cut(s) 904
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 560, 715, 820
Bse8I GATNNNNATC 1 cut(s) 828
BseDI CCNNGG 3 cut(s) 90, 160, 484
BseGI GGATG 4 cut(s) 156, 613, 744, 829
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 3 cut(s) 560, 715, 820
BseSI GKGCMC 1 cut(s) 709
BseXI GCAGC 3 cut(s) 43, 793, 847
BsgI GTGCAG 1 cut(s) 885
BsiSI CCGG 1 cut(s) 905
BslI CCNNNNNNNGG 3 cut(s) 560, 715, 820
BsmAI GTCTC 2 cut(s) 263, 497
Bso31I GGTCTC 1 cut(s) 497
Bsp1286I GDGCHC 2 cut(s) 626, 709
Bsp143I GATC 4 cut(s) 310, 398, 517, 589
Bsp19I CCATGG 3 cut(s) 90, 160, 484
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 335, 774
BspMI ACCTGC 1 cut(s) 907
BspPI GGATC 3 cut(s) 406, 525, 584
BspTNI GGTCTC 1 cut(s) 497
BssECI CCNNGG 3 cut(s) 90, 160, 484
BssMI GATC 4 cut(s) 310, 398, 517, 589
BssT1I CCWWGG 3 cut(s) 90, 160, 484
Bst4CI ACNGT 3 cut(s) 539, 763, 785
Bst6I CTCTTC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 47, 884, 888
BstDEI CTNAG 1 cut(s) 443
BstDSI CCRYGG 3 cut(s) 90, 160, 484
BstF5I GGATG 4 cut(s) 156, 613, 744, 829
BstKTI GATC 4 cut(s) 313, 401, 520, 592
BstMAI GTCTC 2 cut(s) 263, 497
BstMBI GATC 4 cut(s) 310, 398, 517, 589
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 709
BstV1I GCAGC 3 cut(s) 43, 793, 847
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 2 cut(s) 398, 589
BstYI RGATCY 2 cut(s) 398, 589
BtgI CCRYGG 3 cut(s) 90, 160, 484
BtsCI GGATG 4 cut(s) 156, 613, 744, 829
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 4 cut(s) 270, 423, 484, 661
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 3 cut(s) 47, 884, 888
CaiI CAGNNNCTG 1 cut(s) 593
CciI TCATGA 1 cut(s) 556
Csp6I GTAC 1 cut(s) 551
CviAII CATG 7 cut(s) 91, 161, 178, 338, 485, 557, 677
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 1 cut(s) 443
DpnI GATC 4 cut(s) 312, 400, 519, 591
DpnII GATC 4 cut(s) 310, 398, 517, 589
DraIII CACNNNGTG 1 cut(s) 632
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 3 cut(s) 90, 160, 484
Eco24I GRGCYC 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 497
Eco32I GATATC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 314, 615
Eco72I CACGTG 1 cut(s) 629
EcoRV GATATC 1 cut(s) 305
EcoT14I CCWWGG 3 cut(s) 90, 160, 484
EcoT38I GRGCYC 1 cut(s) 626
ErhI CCWWGG 3 cut(s) 90, 160, 484
FaeI CATG 7 cut(s) 94, 164, 181, 341, 488, 560, 680
FatI CATG 7 cut(s) 90, 160, 177, 337, 484, 556, 676
FblI GTMKAC 2 cut(s) 346, 385
Fnu4HI GCNGC 3 cut(s) 32, 807, 861
FokI GGATG 4 cut(s) 143, 620, 751, 836
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 32, 807, 861
FspBI CTAG 1 cut(s) 14
GluI GCNGC 3 cut(s) 32, 807, 861
HapII CCGG 1 cut(s) 905
Hin1II CATG 7 cut(s) 94, 164, 181, 341, 488, 560, 680
HincII GTYRAC 2 cut(s) 247, 347
HindII GTYRAC 2 cut(s) 247, 347
HinfI GANTC 7 cut(s) 59, 126, 255, 343, 369, 849, 872
HpaII CCGG 1 cut(s) 905
HphI GGTGA 3 cut(s) 164, 310, 730
Hpy166II GTNNAC 3 cut(s) 247, 347, 386
Hpy188I TCNGA 7 cut(s) 10, 64, 315, 522, 589, 753, 848
Hpy188III TCNNGA 6 cut(s) 37, 121, 308, 557, 593, 876
Hpy8I GTNNAC 3 cut(s) 247, 347, 386
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 3 cut(s) 64, 289, 719
HpyCH4III ACNGT 3 cut(s) 539, 763, 785
HpyCH4IV ACGT 2 cut(s) 117, 628
HpyCH4V TGCA 4 cut(s) 423, 680, 809, 902
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 2 cut(s) 117, 628
Hsp92II CATG 7 cut(s) 94, 164, 181, 341, 488, 560, 680
Kzo9I GATC 4 cut(s) 310, 398, 517, 589
LmnI GCTCC 2 cut(s) 139, 778
Lsp1109I GCAGC 3 cut(s) 43, 793, 847
LweI GCATC 2 cut(s) 121, 847
MaeI CTAG 1 cut(s) 14
MaeII ACGT 2 cut(s) 117, 628
MaeIII GTNAC 5 cut(s) 139, 152, 572, 757, 785
MalI GATC 4 cut(s) 312, 400, 519, 591
MboI GATC 4 cut(s) 310, 398, 517, 589
MboII GAAGA 4 cut(s) 119, 608, 657, 844
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 2 cut(s) 398, 589
MhlI GDGCHC 2 cut(s) 626, 709
MluCI AATT 2 cut(s) 531, 778
MlyI GAGTC 4 cut(s) 68, 135, 352, 858
MnlI CCTC 8 cut(s) 60, 92, 110, 194, 245, 323, 564, 872
MseI TTAA 2 cut(s) 672, 834
MslI CAYNNNNRTG 1 cut(s) 561
MspI CCGG 1 cut(s) 905
MunI CAATTG 1 cut(s) 531
MwoI GCNNNNNNNGC 1 cut(s) 28
NcoI CCATGG 3 cut(s) 90, 160, 484
NdeII GATC 4 cut(s) 310, 398, 517, 589
NlaIII CATG 7 cut(s) 94, 164, 181, 341, 488, 560, 680
NlaIV GGNNCC 2 cut(s) 335, 774
NmuCI GTSAC 3 cut(s) 139, 152, 572
PagI TCATGA 1 cut(s) 556
PfeI GAWTC 3 cut(s) 255, 369, 872
PflMI CCANNNNNTGG 1 cut(s) 715
PkrI GCNGC 3 cut(s) 33, 808, 862
PleI GAGTC 4 cut(s) 67, 134, 351, 857
PmaCI CACGTG 1 cut(s) 629
PmlI CACGTG 1 cut(s) 629
PpsI GAGTC 4 cut(s) 67, 134, 351, 857
Ppu21I YACGTR 1 cut(s) 629
PspCI CACGTG 1 cut(s) 629
PspN4I GGNNCC 2 cut(s) 335, 774
PstNI CAGNNNCTG 1 cut(s) 593
PsuI RGATCY 2 cut(s) 398, 589
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 561
SalI GTCGAC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 672, 834
SatI GCNGC 3 cut(s) 32, 807, 861
Sau3AI GATC 4 cut(s) 310, 398, 517, 589
SchI GAGTC 4 cut(s) 68, 135, 352, 858
SduI GDGCHC 2 cut(s) 626, 709
SfaNI GCATC 2 cut(s) 121, 847
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 2 cut(s) 35, 815
SmoI CTYRAG 2 cut(s) 35, 815
Sse9I AATT 2 cut(s) 531, 778
SspMI CTAG 1 cut(s) 14
StyI CCWWGG 3 cut(s) 90, 160, 484
TaaI ACNGT 3 cut(s) 539, 763, 785
TaiI ACGT 2 cut(s) 120, 631
TaqI TCGA 5 cut(s) 105, 129, 346, 435, 855
TasI AATT 2 cut(s) 531, 778
TfiI GAWTC 3 cut(s) 255, 369, 872
Tru1I TTAA 2 cut(s) 672, 834
Tru9I TTAA 2 cut(s) 672, 834
TscAI CASTG 4 cut(s) 270, 430, 484, 661
TseFI GTSAC 3 cut(s) 139, 152, 572
TseI GCWGC 3 cut(s) 31, 806, 860
Tsp45I GTSAC 3 cut(s) 139, 152, 572
TspDTI ATGAA 3 cut(s) 194, 657, 840
TspRI CASTG 4 cut(s) 270, 430, 484, 661
Van91I CCANNNNNTGG 1 cut(s) 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmiI GTMKAC 2 cut(s) 346, 385
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.