Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0010665

Physical Location & Seq

Genomic Coordinates Reverse (-)

59973 .. 63806

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgtcttctgacctagacaggcaaatagagcagctcaagaagtgcgagcctctcaaagagtccgaagtcaaggctctctgcctcaaagccatggaaattctcgtcgaagagagcaacgtccagagagtcgatgctcctgtcactatttgcggtgacatccacggtcagttttatgacatgaaagagcttttcaaagtgggaggcgattgcccaaagacaaactacttgtttcttggagatttcgtcgacagaggattctattcagtggagacatttctactcctacttgcccttaaggtgagatatccagatcggataacactcattagaggcaaccatgagagtcgacagataacacaggtatatggattctatgatgagtgtctacgaaaatatggatctgtcaatgtttggagatattgcactgatatattcgattacctaagtctgtcagctctcattgagaataagattttcagtgtccatggtggtctctctcctgccatttcaactttggatcagatacgaacaattgatcggaagcaagaagtacctcatgatggtgctatgtgtgacctactgtggtcagatcctgaagatattgtggatggttggggtttgagtccacgtggcgctggtttcctgttcggcggcagtgttgtttcttcatttaaccatgcaaacaacattgactatatttgtcgtgcccaccagttggtgatggaagggtataaatggatgtttaataatcagattgttactgtatggtcagctccaaattactgttacagatgtggtaatgtagctgcaatccttgagctggatgaaaatcttaacaagcagttccgagtcttcgatgctgccccacaggaatcaagaggcacgccggccaaaaaacctgcaccggactactttctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04922 map04922

Pfam Domains

Protein Families

Metallophos

Protein Analysis

306

Amino Acids

34.83

Weight (kDa)

5.24

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55260 AT5G55260
fragaria_vesca	FvH4_3g23620
malus_domestica	MD03G1192600.v1.1 MD11G1209100.v1.1
prunus_persica	Prupe.4G224600_v2.0.a1 Prupe.4G224600_v2.0.a1
pyrus_communis	pycom03g14490 pycom11g18400
rosa_chinensis	RchiOBHm_Chr5g0041641
rosa_laevigata	RLG00000034087
rosa_multiflora	Rmu_sc0000861.1_g000015 Rmu_sc0011648.1_g000007
rosa_roxburghii	Rroxscaffold_1G00038850
rosa_rugosa	Rorug05G0194400
rosa_samantha	Rh5AG279800 Rh5BG285200 Rh5CG317200 Rh5DG294000
rosa_wichuraiana	Rw5G026340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	907
AccB7I	CCANNNNNTGG	1 cut(s)	715
AccI	GTMKAC	3 cut(s)	246, 346, 385
AciI	CCGC	2 cut(s)	150, 651
AclWI	GGATC	3 cut(s)	406, 525, 584
AcoI	YGGCCR	1 cut(s)	888
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	615
AcvI	CACGTG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	3 cut(s)	560, 715, 820
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	193, 510
AluBI	AGCT	6 cut(s)	34, 187, 455, 773, 806, 820
AluI	AGCT	6 cut(s)	34, 187, 455, 773, 806, 820
Alw26I	GTCTC	2 cut(s)	263, 497
AlwI	GGATC	3 cut(s)	406, 525, 584
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	888
ApeKI	GCWGC	3 cut(s)	31, 806, 860
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	635
AsuHPI	GGTGA	3 cut(s)	164, 310, 730
BaeGI	GKGCMC	1 cut(s)	709
BbrPI	CACGTG	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	844
BbvI	GCAGC	3 cut(s)	43, 793, 847
BccI	CCATC	3 cut(s)	554, 602, 715
BcoDI	GTCTC	2 cut(s)	263, 497
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	636
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	907
BisI	GCNGC	4 cut(s)	32, 652, 807, 861
BlsI	GCNGC	4 cut(s)	33, 653, 808, 862
BmsI	GCATC	2 cut(s)	121, 847
BpiI	GAAGAC	1 cut(s)	844
BpuEI	CTTGAG	2 cut(s)	20, 836
BsaAI	YACGTR	1 cut(s)	629
BsaBI	GATNNNNATC	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	90, 160, 484
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	560, 715, 820
Bse118I	RCCGGY	1 cut(s)	886
Bse1I	ACTGG	1 cut(s)	712
Bse8I	GATNNNNATC	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	90, 160, 484
BseGI	GGATG	4 cut(s)	156, 613, 744, 829
BseJI	GATNNNNATC	1 cut(s)	828
BseLI	CCNNNNNNNGG	3 cut(s)	560, 715, 820
BseNI	ACTGG	1 cut(s)	712
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	3 cut(s)	43, 793, 847
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	1 cut(s)	890
BsiSI	CCGG	2 cut(s)	887, 905
BslI	CCNNNNNNNGG	3 cut(s)	560, 715, 820
BsmAI	GTCTC	2 cut(s)	263, 497
BsnI	GGCC	1 cut(s)	890
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	5 cut(s)	310, 398, 517, 535, 589
Bsp19I	CCATGG	2 cut(s)	90, 484
BspACI	CCGC	2 cut(s)	150, 651
BspANI	GGCC	1 cut(s)	890
BspHI	TCATGA	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	907
BspPI	GGATC	3 cut(s)	406, 525, 584
BspTI	CTTAAG	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	497
BsrFI	RCCGGY	1 cut(s)	886
BsrI	ACTGG	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	886
BssECI	CCNNGG	3 cut(s)	90, 160, 484
BssMI	GATC	5 cut(s)	310, 398, 517, 535, 589
BssT1I	CCWWGG	2 cut(s)	90, 484
Bst4CI	ACNGT	4 cut(s)	164, 582, 763, 785
Bst6I	CTCTTC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	47, 884, 888
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	3 cut(s)	90, 160, 484
BstF5I	GGATG	4 cut(s)	156, 613, 744, 829
BstH2I	RGCGCY	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	5 cut(s)	313, 401, 520, 538, 592
BstMAI	GTCTC	2 cut(s)	263, 497
BstMBI	GATC	5 cut(s)	310, 398, 517, 535, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	709
BstV1I	GCAGC	3 cut(s)	43, 793, 847
BstV2I	GAAGAC	1 cut(s)	844
BstX2I	RGATCY	2 cut(s)	398, 589
BstYI	RGATCY	2 cut(s)	398, 589
BsuRI	GGCC	1 cut(s)	890
BtgI	CCRYGG	3 cut(s)	90, 160, 484
BtsCI	GGATG	4 cut(s)	156, 613, 744, 829
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	4 cut(s)	270, 423, 484, 661
BveI	ACCTGC	1 cut(s)	907
Cac8I	GCNNGC	3 cut(s)	47, 884, 888
CaiI	CAGNNNCTG	1 cut(s)	593
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	1 cut(s)	886
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	6 cut(s)	91, 178, 338, 485, 557, 677
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	5 cut(s)	312, 400, 519, 537, 591
DpnII	GATC	5 cut(s)	310, 398, 517, 535, 589
EaeI	YGGCCR	1 cut(s)	888
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	90, 484
Eco31I	GGTCTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	615
Eco72I	CACGTG	1 cut(s)	629
EcoRV	GATATC	1 cut(s)	305
EcoT14I	CCWWGG	2 cut(s)	90, 484
ErhI	CCWWGG	2 cut(s)	90, 484
FaeI	CATG	6 cut(s)	94, 181, 341, 488, 560, 680
FatI	CATG	6 cut(s)	90, 177, 337, 484, 556, 676
FblI	GTMKAC	3 cut(s)	246, 346, 385
Fnu4HI	GCNGC	4 cut(s)	32, 652, 807, 861
FokI	GGATG	4 cut(s)	143, 620, 751, 836
Fsp4HI	GCNGC	4 cut(s)	32, 652, 807, 861
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	4 cut(s)	32, 652, 807, 861
HaeII	RGCGCY	1 cut(s)	636
HaeIII	GGCC	1 cut(s)	890
HapII	CCGG	2 cut(s)	887, 905
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	6 cut(s)	94, 181, 341, 488, 560, 680
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	2 cut(s)	247, 347
HindII	GTYRAC	2 cut(s)	247, 347
HinfI	GANTC	8 cut(s)	59, 126, 255, 343, 369, 622, 849, 872
HpaII	CCGG	2 cut(s)	887, 905
HphI	GGTGA	3 cut(s)	164, 310, 730
Hpy166II	GTNNAC	4 cut(s)	247, 347, 386, 626
Hpy188I	TCNGA	8 cut(s)	10, 64, 315, 522, 540, 589, 753, 848
Hpy188III	TCNNGA	6 cut(s)	37, 121, 308, 557, 593, 876
Hpy8I	GTNNAC	4 cut(s)	247, 347, 386, 626
Hpy99I	CGWCG	2 cut(s)	107, 248
HpyAV	CCTTC	1 cut(s)	719
HpyCH4III	ACNGT	4 cut(s)	164, 582, 763, 785
HpyCH4IV	ACGT	2 cut(s)	117, 628
HpyCH4V	TGCA	4 cut(s)	423, 680, 809, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	2 cut(s)	117, 628
Hsp92II	CATG	6 cut(s)	94, 181, 341, 488, 560, 680
HspAI	GCGC	1 cut(s)	633
KroI	GCCGGC	1 cut(s)	886
KroNI	GCCGGC	1 cut(s)	888
Kzo9I	GATC	5 cut(s)	310, 398, 517, 535, 589
LmnI	GCTCC	2 cut(s)	139, 778
Lsp1109I	GCAGC	3 cut(s)	43, 793, 847
LweI	GCATC	2 cut(s)	121, 847
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	2 cut(s)	117, 628
MaeIII	GTNAC	5 cut(s)	139, 152, 572, 757, 785
MalI	GATC	5 cut(s)	312, 400, 519, 537, 591
MboI	GATC	5 cut(s)	310, 398, 517, 535, 589
MboII	GAAGA	4 cut(s)	119, 608, 657, 844
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	398, 589
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	3 cut(s)	96, 531, 778
MlyI	GAGTC	5 cut(s)	68, 135, 352, 631, 858
MnlI	CCTC	7 cut(s)	60, 92, 194, 245, 323, 564, 872
MroNI	GCCGGC	1 cut(s)	886
MseI	TTAA	4 cut(s)	294, 672, 744, 834
MslI	CAYNNNNRTG	1 cut(s)	561
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	2 cut(s)	887, 905
MunI	CAATTG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	28
NaeI	GCCGGC	1 cut(s)	888
NcoI	CCATGG	2 cut(s)	90, 484
NdeII	GATC	5 cut(s)	310, 398, 517, 535, 589
NgoMIV	GCCGGC	1 cut(s)	886
NlaIII	CATG	6 cut(s)	94, 181, 341, 488, 560, 680
NmuCI	GTSAC	3 cut(s)	139, 152, 572
PagI	TCATGA	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	888
PfeI	GAWTC	3 cut(s)	255, 369, 872
PflMI	CCANNNNNTGG	1 cut(s)	715
PkrI	GCNGC	4 cut(s)	33, 653, 808, 862
PleI	GAGTC	5 cut(s)	67, 134, 351, 630, 857
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	5 cut(s)	67, 134, 351, 630, 857
Ppu21I	YACGTR	1 cut(s)	629
PspCI	CACGTG	1 cut(s)	629
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	398, 589
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	561
SalI	GTCGAC	2 cut(s)	245, 345
SaqAI	TTAA	4 cut(s)	294, 672, 744, 834
SatI	GCNGC	4 cut(s)	32, 652, 807, 861
Sau3AI	GATC	5 cut(s)	310, 398, 517, 535, 589
SchI	GAGTC	5 cut(s)	68, 135, 352, 631, 858
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	2 cut(s)	121, 847
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	3 cut(s)	35, 293, 815
SmoI	CTYRAG	3 cut(s)	35, 293, 815
Sse9I	AATT	3 cut(s)	96, 531, 778
SsiI	CCGC	2 cut(s)	150, 651
SspMI	CTAG	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	90, 484
TaaI	ACNGT	4 cut(s)	164, 582, 763, 785
TaiI	ACGT	2 cut(s)	120, 631
TaqI	TCGA	6 cut(s)	105, 129, 246, 346, 435, 855
TasI	AATT	3 cut(s)	96, 531, 778
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	3 cut(s)	255, 369, 872
Tru1I	TTAA	4 cut(s)	294, 672, 744, 834
Tru9I	TTAA	4 cut(s)	294, 672, 744, 834
TscAI	CASTG	4 cut(s)	270, 430, 484, 661
TseFI	GTSAC	3 cut(s)	139, 152, 572
TseI	GCWGC	3 cut(s)	31, 806, 860
Tsp45I	GTSAC	3 cut(s)	139, 152, 572
TspDTI	ATGAA	3 cut(s)	194, 657, 840
TspRI	CASTG	4 cut(s)	270, 430, 484, 661
Van91I	CCANNNNNTGG	1 cut(s)	715
Vha464I	CTTAAG	1 cut(s)	293
XapI	RAATTY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	3 cut(s)	246, 346, 385
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.