Rroxscaffold_1G00038850

Protein phosphatase 2A homologues, catalytic domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010665
Physical Location & Seq
Forward (+)
56353591 .. 56358279
4689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038850.1

Sequence Viewer

Length: 1017 bp
ATGTCTTCTGACCTAGACAGGCAAATAGAGCAGCTCAAGAAATGCGAGCCTCTCAAAGAGTCCGAAGTCAAGGCTCTCTGCCTCAAAGCCATGGAAATTCTCGTCGAAGAGAGCAACGTCCAGAGAGTCGATGCTCCTGTCACTATTTGCGGTGACATCCACGGTCAGTTTTATGACATGAAGGAGCTCTTCAAAGTGGGAGGCGATTGCCCAAAGACAAACTACTTGTTTCTTGGAGATTTCGTTGACAGAGGATTCTATTCAGTGGAGACATTTCTACTCCTACTTGCCCTGAAGGTGAGATATCCAGATCGGATAACACTCATTAGAGGGAACCATGAGAGTCGACAGATAACACAGGTGTATGGATTCTATGATGAGTGTCTACGAAAATATGGATCTGTCAATGTTTGGAGATATTGCACTGATATATTCGATTACCTAAGAAATTTCCCTTCATTGAAGGCATTGAAGGCATTGGTATCTGAAACCATCGTTCAGTCTCGTTTGACATGGAAAGTAAGCCCCTGGCCTTGGCTAAGTCTGTCAGCTCTCATTGAGAATAAGATTTTCAGTGTCCATGGTGGTCTCTCTCCTGCCATTTCAACTTTGGATCAGATACGAACAATTGATCGTAAGCAAGAAGTACCTCATGATGGTGCTATGTGTGACCTACTATGGTCAGATCCTGAAGATATTGTGGATGGTTGGGGTTTGAGTCCACGTGGTGCTGGTTTCCTGTTCGGTGGCAGTGTTGTTTCTTCATTTAACCATGCAAACAACATTGACTATATATGTCGTGCCCACCAGTTGGTGATGGAAGGGTATAAATGGATGTTCAATAATCAGATTGTTACTGTATGGTCAGCTCCAAATTACTGTTACAGATGTGGTAATGTAGCTGCAATCCTTGAGCTGGATGAAAATCTTAACAAGCAGTTCCGAGTCTTTGATGCTGCCCCACAGGAATCAAGAGGCACGCCGGCCAAAAAACCTGCACCGGACTACTTTCTATGA

Protein Analysis

338

Amino Acids

38.57

Weight (kDa)

5.76

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 46 - 272 1.8e-42 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010665)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55260 AT5G55260
fragaria_vesca FvH4_3g23620
malus_domestica MD03G1192600.v1.1 MD11G1209100.v1.1
prunus_persica Prupe.4G224600_v2.0.a1 Prupe.4G224600_v2.0.a1
pyrus_communis pycom03g14490 pycom11g18400
rosa_chinensis RchiOBHm_Chr5g0041641
rosa_laevigata RLG00000034087
rosa_multiflora Rmu_sc0000861.1_g000015 Rmu_sc0011648.1_g000007
rosa_roxburghii Rroxscaffold_1G00038850
rosa_rugosa Rorug05G0194400
rosa_samantha Rh5AG279800 Rh5BG285200 Rh5CG317200 Rh5DG294000
rosa_wichuraiana Rw5G026340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1003
AccB7I CCANNNNNTGG 1 cut(s) 811
AccI GTMKAC 2 cut(s) 346, 385
AciI CCGC 1 cut(s) 150
AclWI GGATC 3 cut(s) 406, 621, 680
AcoI YGGCCR 1 cut(s) 984
AcsI RAATTY 2 cut(s) 96, 448
AcuI CTGAAG 2 cut(s) 314, 711
AcvI CACGTG 1 cut(s) 725
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 4 cut(s) 534, 656, 811, 916
AgsI TTSAA 5 cut(s) 193, 463, 472, 606, 841
AjnI CCWGG 1 cut(s) 527
AluBI AGCT 6 cut(s) 34, 187, 551, 869, 902, 916
AluI AGCT 6 cut(s) 34, 187, 551, 869, 902, 916
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 3 cut(s) 263, 507, 593
AlwI GGATC 3 cut(s) 406, 621, 680
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 2 cut(s) 530, 984
ApeKI GCWGC 3 cut(s) 31, 902, 956
ApoI RAATTY 2 cut(s) 96, 448
AsuHPI GGTGA 3 cut(s) 164, 310, 826
BaeGI GKGCMC 1 cut(s) 805
BanII GRGCYC 1 cut(s) 189
BbrPI CACGTG 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 43, 889, 943
BccI CCATC 4 cut(s) 500, 650, 698, 811
BciT130I CCWGG 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 263, 507, 593
BfaI CTAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 1003
BisI GCNGC 3 cut(s) 32, 903, 957
BlsI GCNGC 3 cut(s) 33, 904, 958
Bme1390I CCNGG 1 cut(s) 529
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 2 cut(s) 121, 943
BpuEI CTTGAG 2 cut(s) 20, 932
BsaAI YACGTR 1 cut(s) 725
BsaBI GATNNNNATC 1 cut(s) 924
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 5 cut(s) 90, 160, 527, 533, 580
BsaWI WCCGGW 1 cut(s) 1000
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 4 cut(s) 534, 656, 811, 916
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 1 cut(s) 808
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 5 cut(s) 90, 160, 527, 533, 580
BseGI GGATG 4 cut(s) 156, 709, 840, 925
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 4 cut(s) 534, 656, 811, 916
BseNI ACTGG 1 cut(s) 808
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 3 cut(s) 43, 889, 943
BsgI GTGCAG 1 cut(s) 981
BshFI GGCC 2 cut(s) 532, 986
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 983, 1001
BslI CCNNNNNNNGG 4 cut(s) 534, 656, 811, 916
BsmAI GTCTC 3 cut(s) 263, 507, 593
BsnI GGCC 2 cut(s) 532, 986
Bso31I GGTCTC 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 189, 805
Bsp143I GATC 5 cut(s) 310, 398, 613, 631, 685
Bsp19I CCATGG 2 cut(s) 90, 580
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 532, 986
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 1003
BspPI GGATC 3 cut(s) 406, 621, 680
BspQI GCTCTTC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 982
BsrI ACTGG 1 cut(s) 808
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 5 cut(s) 90, 160, 527, 533, 580
BssMI GATC 5 cut(s) 310, 398, 613, 631, 685
BssT1I CCWWGG 3 cut(s) 90, 533, 580
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 3 cut(s) 164, 859, 881
Bst6I CTCTTC 2 cut(s) 102, 194
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 3 cut(s) 47, 980, 984
BstDEI CTNAG 2 cut(s) 443, 539
BstDSI CCRYGG 3 cut(s) 90, 160, 580
BstF5I GGATG 4 cut(s) 156, 709, 840, 925
BstKTI GATC 5 cut(s) 313, 401, 616, 634, 688
BstMAI GTCTC 3 cut(s) 263, 507, 593
BstMBI GATC 5 cut(s) 310, 398, 613, 631, 685
BstMWI GCNNNNNNNGC 2 cut(s) 28, 473
BstNI CCWGG 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 805
BstV1I GCAGC 3 cut(s) 43, 889, 943
BstX2I RGATCY 2 cut(s) 398, 685
BstYI RGATCY 2 cut(s) 398, 685
BsuRI GGCC 2 cut(s) 532, 986
BtgI CCRYGG 3 cut(s) 90, 160, 580
BtsCI GGATG 4 cut(s) 156, 709, 840, 925
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 4 cut(s) 270, 423, 580, 757
BveI ACCTGC 1 cut(s) 1003
Cac8I GCNNGC 3 cut(s) 47, 980, 984
CaiI CAGNNNCTG 1 cut(s) 689
CciI TCATGA 1 cut(s) 652
Cfr10I RCCGGY 1 cut(s) 982
Csp6I GTAC 1 cut(s) 647
CviAII CATG 7 cut(s) 91, 178, 338, 513, 581, 653, 773
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 2 cut(s) 443, 539
DpnI GATC 5 cut(s) 312, 400, 615, 633, 687
DpnII GATC 5 cut(s) 310, 398, 613, 631, 685
DraIII CACNNNGTG 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 984
Eam1104I CTCTTC 2 cut(s) 102, 194
EarI CTCTTC 2 cut(s) 102, 194
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 3 cut(s) 90, 533, 580
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 593
Eco32I GATATC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 2 cut(s) 314, 711
Eco72I CACGTG 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 527
EcoRV GATATC 1 cut(s) 305
EcoT14I CCWWGG 3 cut(s) 90, 533, 580
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 3 cut(s) 90, 533, 580
FaeI CATG 7 cut(s) 94, 181, 341, 516, 584, 656, 776
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 7 cut(s) 90, 177, 337, 512, 580, 652, 772
FblI GTMKAC 2 cut(s) 346, 385
Fnu4HI GCNGC 3 cut(s) 32, 903, 957
FokI GGATG 4 cut(s) 143, 716, 847, 932
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 32, 903, 957
FspBI CTAG 1 cut(s) 14
GluI GCNGC 3 cut(s) 32, 903, 957
HaeIII GGCC 2 cut(s) 532, 986
HapII CCGG 2 cut(s) 983, 1001
Hin1II CATG 7 cut(s) 94, 181, 341, 516, 584, 656, 776
HincII GTYRAC 2 cut(s) 247, 347
HindII GTYRAC 2 cut(s) 247, 347
HinfI GANTC 8 cut(s) 59, 126, 255, 343, 369, 718, 945, 968
HpaII CCGG 2 cut(s) 983, 1001
HphI GGTGA 3 cut(s) 164, 310, 826
Hpy166II GTNNAC 4 cut(s) 247, 347, 386, 722
Hpy188I TCNGA 8 cut(s) 10, 64, 315, 487, 618, 685, 849, 944
Hpy188III TCNNGA 6 cut(s) 37, 121, 308, 653, 689, 972
Hpy8I GTNNAC 4 cut(s) 247, 347, 386, 722
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 6 cut(s) 175, 289, 457, 465, 466, 815
HpyCH4III ACNGT 3 cut(s) 164, 859, 881
HpyCH4IV ACGT 2 cut(s) 117, 724
HpyCH4V TGCA 4 cut(s) 423, 776, 905, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 473
HpyF3I CTNAG 2 cut(s) 443, 539
HpySE526I ACGT 2 cut(s) 117, 724
Hsp92II CATG 7 cut(s) 94, 181, 341, 516, 584, 656, 776
KroI GCCGGC 1 cut(s) 982
KroNI GCCGGC 1 cut(s) 984
Kzo9I GATC 5 cut(s) 310, 398, 613, 631, 685
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 3 cut(s) 139, 184, 874
Lsp1109I GCAGC 3 cut(s) 43, 889, 943
LweI GCATC 2 cut(s) 121, 943
MaeI CTAG 1 cut(s) 14
MaeII ACGT 2 cut(s) 117, 724
MaeIII GTNAC 5 cut(s) 139, 152, 668, 853, 881
MalI GATC 5 cut(s) 312, 400, 615, 633, 687
MboI GATC 5 cut(s) 310, 398, 613, 631, 685
MboII GAAGA 4 cut(s) 119, 181, 704, 753
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 398, 685
MhlI GDGCHC 2 cut(s) 189, 805
MluCI AATT 4 cut(s) 96, 448, 627, 874
MlyI GAGTC 5 cut(s) 68, 135, 352, 727, 954
MnlI CCTC 7 cut(s) 60, 92, 194, 245, 323, 660, 968
MroNI GCCGGC 1 cut(s) 982
MseI TTAA 2 cut(s) 768, 930
MslI CAYNNNNRTG 1 cut(s) 657
MspI CCGG 2 cut(s) 983, 1001
MspR9I CCNGG 1 cut(s) 529
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 1 cut(s) 529
MwoI GCNNNNNNNGC 2 cut(s) 28, 473
NaeI GCCGGC 1 cut(s) 984
NcoI CCATGG 2 cut(s) 90, 580
NdeII GATC 5 cut(s) 310, 398, 613, 631, 685
NgoMIV GCCGGC 1 cut(s) 982
NlaIII CATG 7 cut(s) 94, 181, 341, 516, 584, 656, 776
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 3 cut(s) 139, 152, 668
PagI TCATGA 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 984
PfeI GAWTC 3 cut(s) 255, 369, 968
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 3 cut(s) 33, 904, 958
PleI GAGTC 5 cut(s) 67, 134, 351, 726, 953
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 5 cut(s) 67, 134, 351, 726, 953
Ppu21I YACGTR 1 cut(s) 725
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 527
PspCI CACGTG 1 cut(s) 725
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 2 cut(s) 398, 685
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 1 cut(s) 657
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 768, 930
SatI GCNGC 3 cut(s) 32, 903, 957
Sau3AI GATC 5 cut(s) 310, 398, 613, 631, 685
SchI GAGTC 5 cut(s) 68, 135, 352, 727, 954
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 2 cut(s) 189, 805
SfaNI GCATC 2 cut(s) 121, 943
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 2 cut(s) 35, 911
SmoI CTYRAG 2 cut(s) 35, 911
Sse9I AATT 4 cut(s) 96, 448, 627, 874
SsiI CCGC 1 cut(s) 150
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 3 cut(s) 90, 533, 580
TaaI ACNGT 3 cut(s) 164, 859, 881
TaiI ACGT 2 cut(s) 120, 727
TaqI TCGA 4 cut(s) 105, 129, 346, 435
TasI AATT 4 cut(s) 96, 448, 627, 874
TfiI GAWTC 3 cut(s) 255, 369, 968
Tru1I TTAA 2 cut(s) 768, 930
Tru9I TTAA 2 cut(s) 768, 930
TscAI CASTG 4 cut(s) 270, 430, 580, 757
TseFI GTSAC 3 cut(s) 139, 152, 668
TseI GCWGC 3 cut(s) 31, 902, 956
Tsp45I GTSAC 3 cut(s) 139, 152, 668
TspDTI ATGAA 4 cut(s) 194, 447, 753, 936
TspRI CASTG 4 cut(s) 270, 430, 580, 757
Van91I CCANNNNNTGG 1 cut(s) 811
XapI RAATTY 2 cut(s) 96, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmiI GTMKAC 2 cut(s) 346, 385
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.