Rh5CG317200

Protein phosphatase 2A homologues, catalytic domain.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010665
Physical Location & Seq
Reverse (-)
35131057 .. 35135614
4558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG317200.1

Sequence Viewer

Length: 876 bp
ATGTCTTCTGACCTAGACAGGCAAATAGAGCAGCTCAAGAAATGCGAGCCTCTCAAAGAGTCCGAAGTCAAGGCTCTCTGTCTCAAAGCCATGGAAATCCTCGTCGAAGAGAGCAACGTCCAGAGAGTCGATGCCCCTGTCACTATTTGCGGTGACATCCACGGTCAGTTTTATGACATGAAAGAGCTTTTCAAAGTGGGAGGCGATTGCCCAAAGACTAACTACTTGTTTCTTGGAGATTTCGTTGACAGAGGATTCTATTCAGTGGAGACATTTCTACTCCTACTTGCCCTGAAGGTGAGGTATCCAGATCGGATAACACTCATTAGAGGGAACCATGAGAGTCGACAGATAACACAGGTTAAGTTTCTTCAAATGGTGCCTATTTTTTTGGTACTTATTCATTCAGAATATTTACTGGTTATCCTTTCTAGACAGGTGTATGGATTCTATGATGAGTGTCTACGAAAATATGGATCTGTCAATGTTTGGAGATATTGCACTGATATATTCGATTACCTAAGTCTGTCAGCTCTCATTGAGAATAAGATTTTCAGTGTCCATGGTGGTCTCTCTCCTGCCATTTCAACTTTGGATCAGATACGAACAATTGATCGTAAGCAAGAAGTACCTCATGATGGTGCTATGTGTGACCTACTATGGTCAGATCCTGAAGATATTGTGGATGGTTGGGGTTTGAGTCCACGTGGTGCTGGTTTCCTGTTCGGTGGCAGTGTTGTTTCTTCATTTAACCATGCAAACAACATTGACTATATATGTCGTGCCCACCAGTTGGTGATGGAAGGGTATAAATGGATGTTCAATAATCAGATTGTTACTGTATGGTCAGCTCCAAATTACTGTTACAGGTATTAA

Protein Analysis

291

Amino Acids

33.46

Weight (kDa)

5.53

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 46 - 266 1.1e-46 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010665)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55260 AT5G55260
fragaria_vesca FvH4_3g23620
malus_domestica MD03G1192600.v1.1 MD11G1209100.v1.1
prunus_persica Prupe.4G224600_v2.0.a1 Prupe.4G224600_v2.0.a1
pyrus_communis pycom03g14490 pycom11g18400
rosa_chinensis RchiOBHm_Chr5g0041641
rosa_laevigata RLG00000034087
rosa_multiflora Rmu_sc0000861.1_g000015 Rmu_sc0011648.1_g000007
rosa_roxburghii Rroxscaffold_1G00038850
rosa_rugosa Rorug05G0194400
rosa_samantha Rh5AG279800 Rh5BG285200 Rh5CG317200 Rh5DG294000
rosa_wichuraiana Rw5G026340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 379
AccB7I CCANNNNNTGG 1 cut(s) 793
AccI GTMKAC 2 cut(s) 346, 463
AciI CCGC 1 cut(s) 150
AclWI GGATC 3 cut(s) 484, 603, 662
AcuI CTGAAG 2 cut(s) 314, 693
AcvI CACGTG 1 cut(s) 707
AdeI CACNNNGTG 1 cut(s) 710
AfaI GTAC 2 cut(s) 396, 630
AfiI CCNNNNNNNGG 2 cut(s) 638, 793
AgsI TTSAA 4 cut(s) 193, 374, 588, 823
AluBI AGCT 4 cut(s) 34, 187, 533, 851
AluI AGCT 4 cut(s) 34, 187, 533, 851
Alw26I GTCTC 3 cut(s) 86, 263, 575
AlwI GGATC 3 cut(s) 484, 603, 662
AlwNI CAGNNNCTG 1 cut(s) 671
ApeKI GCWGC 1 cut(s) 31
AsuHPI GGTGA 3 cut(s) 164, 310, 808
BaeGI GKGCMC 1 cut(s) 787
BanI GGYRCC 1 cut(s) 379
BbrPI CACGTG 1 cut(s) 707
BbvI GCAGC 1 cut(s) 43
BccI CCATC 3 cut(s) 632, 680, 793
BciVI GTATCC 1 cut(s) 315
BcoDI GTCTC 3 cut(s) 86, 263, 575
BfaI CTAG 2 cut(s) 14, 432
BfuI GTATCC 1 cut(s) 315
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 335, 381
BmsI GCATC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 707
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 3 cut(s) 90, 160, 562
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 638, 793
Bse1I ACTGG 2 cut(s) 423, 790
BseDI CCNNGG 3 cut(s) 90, 160, 562
BseGI GGATG 3 cut(s) 156, 691, 822
BseLI CCNNNNNNNGG 2 cut(s) 638, 793
BseNI ACTGG 2 cut(s) 423, 790
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 379
BslI CCNNNNNNNGG 2 cut(s) 638, 793
BsmAI GTCTC 3 cut(s) 86, 263, 575
Bso31I GGTCTC 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 787
Bsp143I GATC 5 cut(s) 310, 476, 595, 613, 667
Bsp19I CCATGG 2 cut(s) 90, 562
BspACI CCGC 1 cut(s) 150
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 335, 381
BspPI GGATC 3 cut(s) 484, 603, 662
BspT107I GGYRCC 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 575
BsrI ACTGG 2 cut(s) 423, 790
BssECI CCNNGG 3 cut(s) 90, 160, 562
BssMI GATC 5 cut(s) 310, 476, 595, 613, 667
BssT1I CCWWGG 2 cut(s) 90, 562
Bst4CI ACNGT 3 cut(s) 164, 841, 863
Bst6I CTCTTC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 521
BstDSI CCRYGG 3 cut(s) 90, 160, 562
BstF5I GGATG 3 cut(s) 156, 691, 822
BstKTI GATC 5 cut(s) 313, 479, 598, 616, 670
BstMAI GTCTC 3 cut(s) 86, 263, 575
BstMBI GATC 5 cut(s) 310, 476, 595, 613, 667
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 787
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 2 cut(s) 476, 667
BstYI RGATCY 2 cut(s) 476, 667
BsuI GTATCC 1 cut(s) 315
BtgI CCRYGG 3 cut(s) 90, 160, 562
BtsCI GGATG 3 cut(s) 156, 691, 822
BtsI GCAGTG 1 cut(s) 739
BtsIMutI CAGTG 4 cut(s) 270, 501, 562, 739
Cac8I GCNNGC 1 cut(s) 47
CaiI CAGNNNCTG 1 cut(s) 671
CciI TCATGA 1 cut(s) 634
Csp6I GTAC 2 cut(s) 395, 629
CviAII CATG 6 cut(s) 91, 178, 338, 563, 635, 755
CviJI RGCY 7 cut(s) 34, 49, 74, 89, 187, 533, 851
CviKI_1 RGCY 7 cut(s) 34, 49, 74, 89, 187, 533, 851
CviQI GTAC 2 cut(s) 395, 629
DdeI CTNAG 1 cut(s) 521
DpnI GATC 5 cut(s) 312, 478, 597, 615, 669
DpnII GATC 5 cut(s) 310, 476, 595, 613, 667
DraIII CACNNNGTG 1 cut(s) 710
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 90, 562
Eco31I GGTCTC 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 314, 693
Eco72I CACGTG 1 cut(s) 707
EcoT14I CCWWGG 2 cut(s) 90, 562
ErhI CCWWGG 2 cut(s) 90, 562
FaeI CATG 6 cut(s) 94, 181, 341, 566, 638, 758
FatI CATG 6 cut(s) 90, 177, 337, 562, 634, 754
FblI GTMKAC 2 cut(s) 346, 463
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 3 cut(s) 143, 698, 829
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 2 cut(s) 14, 432
GluI GCNGC 1 cut(s) 32
Hin1II CATG 6 cut(s) 94, 181, 341, 566, 638, 758
HincII GTYRAC 2 cut(s) 247, 347
HindII GTYRAC 2 cut(s) 247, 347
HinfI GANTC 6 cut(s) 59, 126, 255, 343, 447, 700
HphI GGTGA 3 cut(s) 164, 310, 808
Hpy166II GTNNAC 4 cut(s) 247, 347, 464, 704
Hpy188I TCNGA 7 cut(s) 10, 64, 315, 409, 600, 667, 831
Hpy188III TCNNGA 6 cut(s) 37, 121, 308, 432, 635, 671
Hpy8I GTNNAC 4 cut(s) 247, 347, 464, 704
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 289, 797
HpyCH4III ACNGT 3 cut(s) 164, 841, 863
HpyCH4IV ACGT 2 cut(s) 117, 706
HpyCH4V TGCA 2 cut(s) 501, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 2 cut(s) 117, 706
Hsp92II CATG 6 cut(s) 94, 181, 341, 566, 638, 758
Kzo9I GATC 5 cut(s) 310, 476, 595, 613, 667
LmnI GCTCC 1 cut(s) 856
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 121
MaeI CTAG 2 cut(s) 14, 432
MaeII ACGT 2 cut(s) 117, 706
MaeIII GTNAC 5 cut(s) 139, 152, 650, 835, 863
MalI GATC 5 cut(s) 312, 478, 597, 615, 669
MboI GATC 5 cut(s) 310, 476, 595, 613, 667
MboII GAAGA 4 cut(s) 119, 362, 686, 735
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 2 cut(s) 476, 667
MhlI GDGCHC 1 cut(s) 787
MluCI AATT 2 cut(s) 609, 856
MlyI GAGTC 4 cut(s) 68, 135, 352, 709
MnlI CCTC 7 cut(s) 60, 110, 194, 245, 294, 323, 642
MseI TTAA 3 cut(s) 363, 750, 874
MslI CAYNNNNRTG 1 cut(s) 639
MunI CAATTG 1 cut(s) 609
MwoI GCNNNNNNNGC 1 cut(s) 28
NcoI CCATGG 2 cut(s) 90, 562
NdeII GATC 5 cut(s) 310, 476, 595, 613, 667
NlaIII CATG 6 cut(s) 94, 181, 341, 566, 638, 758
NlaIV GGNNCC 2 cut(s) 335, 381
NmuCI GTSAC 3 cut(s) 139, 152, 650
PagI TCATGA 1 cut(s) 634
PfeI GAWTC 2 cut(s) 255, 447
PflMI CCANNNNNTGG 1 cut(s) 793
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 4 cut(s) 67, 134, 351, 708
PmaCI CACGTG 1 cut(s) 707
PmlI CACGTG 1 cut(s) 707
PpsI GAGTC 4 cut(s) 67, 134, 351, 708
Ppu21I YACGTR 1 cut(s) 707
PspCI CACGTG 1 cut(s) 707
PspN4I GGNNCC 2 cut(s) 335, 381
PstNI CAGNNNCTG 1 cut(s) 671
PsuI RGATCY 2 cut(s) 476, 667
RsaI GTAC 2 cut(s) 396, 630
RsaNI GTAC 2 cut(s) 395, 629
RseI CAYNNNNRTG 1 cut(s) 639
SalI GTCGAC 1 cut(s) 345
SaqAI TTAA 3 cut(s) 363, 750, 874
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 5 cut(s) 310, 476, 595, 613, 667
SchI GAGTC 4 cut(s) 68, 135, 352, 709
SduI GDGCHC 1 cut(s) 787
SfaNI GCATC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 2 cut(s) 609, 856
SsiI CCGC 1 cut(s) 150
SspI AATATT 1 cut(s) 413
SspMI CTAG 2 cut(s) 14, 432
StyI CCWWGG 2 cut(s) 90, 562
TaaI ACNGT 3 cut(s) 164, 841, 863
TaiI ACGT 2 cut(s) 120, 709
TaqI TCGA 4 cut(s) 105, 129, 346, 513
TasI AATT 2 cut(s) 609, 856
TfiI GAWTC 2 cut(s) 255, 447
Tru1I TTAA 3 cut(s) 363, 750, 874
Tru9I TTAA 3 cut(s) 363, 750, 874
TscAI CASTG 4 cut(s) 270, 508, 562, 739
TseFI GTSAC 3 cut(s) 139, 152, 650
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 3 cut(s) 139, 152, 650
TspDTI ATGAA 3 cut(s) 194, 392, 735
TspRI CASTG 4 cut(s) 270, 508, 562, 739
Van91I CCANNNNNTGG 1 cut(s) 793
XbaI TCTAGA 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmiI GTMKAC 2 cut(s) 346, 463
XspI CTAG 2 cut(s) 14, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.