Rorug05G0194400

Protein phosphatase 2A homologues, catalytic domain.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
19105159 .. 19111491
6333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0194400.1

Sequence Viewer

Length: 1161 bp
ATGCCTGTCGCAGAAAGAATTGGGTATGGCGAATTGCTCAAGATTGGAGGTGGAAAACAAAGGTTGATAGATCAGGCTTTAGCAGAAGGAGTTAAAGTTGCTGTGTGCAGTACTTCCAATGAGAAGGCGGCCATCTATGATTTGGCGGCTAACACGCTCAGTGTTGATCCTTCAAGTTGTGTTGTGGTAGAAGACAGCGGCATAGGCCTTGCAGCTGCCAAAGCTGCTGGAATGAAGTGTATAGTAACCAAAAGAGGGAGATCCCCCAGAAGAGCGGTTCGACTTGGCATTCTGCAGAAGCCTTCTCAAGCAATATGCTTTGATCCACGTTGCGAGGAGGATGCCGAAAAATACGCATTCCCATTTCATACTGGGACTAATGTATCAGAGGCTTCAAAGGCAGTCTTGGCATATGAGAAGGCAGAGGAGATTTTGCGCCGGAGTTTGACATTGATAGGACAGAGTTGCTTACATTTGGTTCAAATTCATCATGTACAGTGTGTTATGCTAGAGAGTTCGGTGGATGGTAGTTTGGATAAAGAACTTGAACCTCAGGGAGATACTTTGGAAATTAAAAGAATCAATGCAAGTGCCATTTCGGTATTGTCATCTTTGTTAGCAGTTGCCCATACCAACTATGATTGCCTTGCAAACCTTGAAATTGCTTACCTTCAAAGTGGATATTTGGCGATTTTCAGTGGAAATTTGGAACTGTCAAAAAATTGTTTCCAGGAGTTGATCCTCAAAGATCAAAATCATCCCACCGCCTTGATCAATTATGCTGCCCTTCTTTTATGTGCTGGTGGAGGTGCTTCTGCAGATCACGTTTCTGCTATCAATGTTGCAAAGGAATGTTTGTTAGCATCCTTGAATGAAGATCCTAAAGCAGGACATATATGGGCTAATCTTGCAAATGCCTATTATATGAATGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGTGGCCAAGTTAGAGCTCAATTGTATGTCCACACGATATGCTGTTGCAATACACCGAACCAAGGATGCAGAACGGTATCAAGATCCCAGCGCCTTGGCAGGAAGTGAAATGGCTTCAGTTACAAGAGATGGAGAGACTGTTTCTGTTGAACTTCACATAGCATGGGCAGGGCGTGCAATGGTCCACAAAGCCTAA

Protein Analysis

386

Amino Acids

41.48

Weight (kDa)

6.19

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010665)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 275
AciI CCGC 5 cut(s) 128, 146, 198, 275, 765
AclWI GGATC 6 cut(s) 161, 255, 317, 733, 872, 1043
AcoI YGGCCR 2 cut(s) 129, 969
AcsI RAATTY 2 cut(s) 483, 703
AcuI CTGAAG 1 cut(s) 1065
AfaI GTAC 2 cut(s) 112, 495
AfiI CCNNNNNNNGG 3 cut(s) 255, 887, 1027
AgsI TTSAA 8 cut(s) 174, 396, 482, 548, 659, 674, 871, 1115
AjnI CCWGG 1 cut(s) 729
AluBI AGCT 3 cut(s) 215, 224, 982
AluI AGCT 3 cut(s) 215, 224, 982
Alw21I GWGCWC 1 cut(s) 984
Alw26I GTCTC 1 cut(s) 1094
AlwI GGATC 6 cut(s) 161, 255, 317, 733, 872, 1043
AoxI GGCC 3 cut(s) 129, 205, 969
ApeKI GCWGC 4 cut(s) 212, 215, 224, 782
ApoI RAATTY 2 cut(s) 483, 703
AspLEI GCGC 2 cut(s) 438, 1058
AspS9I GGNCC 1 cut(s) 1147
AsuHPI GGTGA 1 cut(s) 944
AvaII GGWCC 1 cut(s) 1147
AxyI CCTNAGG 1 cut(s) 552
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BalI TGGCCA 1 cut(s) 971
BanII GRGCYC 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 984
BbvI GCAGC 4 cut(s) 202, 211, 224, 769
BccI CCATC 3 cut(s) 140, 518, 1088
BcgI CGANNNNNNTGC 2 cut(s) 323, 357
BciT130I CCWGG 1 cut(s) 731
BclI TGATCA 2 cut(s) 771, 934
BcoDI GTCTC 1 cut(s) 1094
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 2 cut(s) 293, 816
BfoI RGCGCY 1 cut(s) 1059
BisI GCNGC 7 cut(s) 129, 147, 199, 213, 216, 225, 783
BlsI GCNGC 7 cut(s) 130, 148, 200, 214, 217, 226, 784
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 1 cut(s) 1147
BmgT120I GGNCC 1 cut(s) 1147
BmrFI CCNGG 1 cut(s) 731
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 3 cut(s) 331, 872, 1021
BmuI ACTGGG 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 23, 291
BsaBI GATNNNNATC 1 cut(s) 753
BsaJI CCNNGG 2 cut(s) 1026, 1059
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 1089, 1119
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 887, 1027
Bse1I ACTGG 1 cut(s) 376
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 1 cut(s) 1149
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 2 cut(s) 1026, 1059
BseGI GGATG 5 cut(s) 346, 529, 757, 863, 1036
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 3 cut(s) 255, 887, 1027
BseMI GCAATG 1 cut(s) 1149
BseMII CTCAG 2 cut(s) 172, 566
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 2 cut(s) 350, 440
BseXI GCAGC 4 cut(s) 202, 211, 224, 769
BseYI CCCAGC 1 cut(s) 1052
BsgI GTGCAG 1 cut(s) 127
BshFI GGCC 3 cut(s) 131, 207, 971
BsiHKAI GWGCWC 1 cut(s) 984
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 3 cut(s) 255, 887, 1027
BsmAI GTCTC 1 cut(s) 1094
BsmFI GGGAC 1 cut(s) 388
BsmI GAATGC 2 cut(s) 288, 356
BsnI GGCC 3 cut(s) 131, 207, 971
Bsp1286I GDGCHC 1 cut(s) 984
Bsp1407I TGTACA 1 cut(s) 493
BspACI CCGC 5 cut(s) 128, 146, 198, 275, 765
BspANI GGCC 3 cut(s) 131, 207, 971
BspCNI CTCAG 2 cut(s) 171, 565
BspMAI CTGCAG 2 cut(s) 297, 820
BspPI GGATC 6 cut(s) 161, 255, 317, 733, 872, 1043
BspQI GCTCTTC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 1149
BsrGI TGTACA 1 cut(s) 493
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 1026, 1059
BssT1I CCWWGG 2 cut(s) 1026, 1059
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 4 cut(s) 498, 714, 1041, 1105
Bst6I CTCTTC 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 1139
BstAUI TGTACA 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 1140
BstDEI CTNAG 2 cut(s) 158, 552
BstENI CCTNNNNNAGG 1 cut(s) 885
BstF5I GGATG 5 cut(s) 346, 529, 757, 863, 1036
BstH2I RGCGCY 1 cut(s) 1059
BstHHI GCGC 2 cut(s) 438, 1058
BstMAI GTCTC 1 cut(s) 1094
BstMWI GCNNNNNNNGC 7 cut(s) 204, 221, 224, 398, 407, 908, 1139
BstNI CCWGG 1 cut(s) 731
BstSCI CCNGG 1 cut(s) 729
BstSFI CTRYAG 2 cut(s) 293, 816
BstV1I GCAGC 4 cut(s) 202, 211, 224, 769
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 3 cut(s) 260, 877, 1048
BstXI CCANNNNNNTGG 1 cut(s) 1060
BstYI RGATCY 3 cut(s) 260, 877, 1048
Bsu36I CCTNAGG 1 cut(s) 552
BsuRI GGCC 3 cut(s) 131, 207, 971
BtsCI GGATG 5 cut(s) 346, 529, 757, 863, 1036
BtsIMutI CAGTG 3 cut(s) 166, 503, 703
Cac8I GCNNGC 1 cut(s) 1140
CfoI GCGC 2 cut(s) 438, 1058
Cfr13I GGNCC 1 cut(s) 1147
Csp6I GTAC 2 cut(s) 111, 494
CviAII CATG 2 cut(s) 491, 1128
CviQI GTAC 2 cut(s) 111, 494
DdeI CTNAG 2 cut(s) 158, 552
EaeI YGGCCR 2 cut(s) 129, 969
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 982
Eco130I CCWWGG 2 cut(s) 1026, 1059
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 984
Eco47I GGWCC 1 cut(s) 1147
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 1 cut(s) 1065
Eco81I CCTNAGG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 982
EcoNI CCTNNNNNAGG 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 729
EcoT14I CCWWGG 2 cut(s) 1026, 1059
EcoT38I GRGCYC 1 cut(s) 984
ErhI CCWWGG 2 cut(s) 1026, 1059
FaeI CATG 2 cut(s) 494, 1131
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 388
FatI CATG 2 cut(s) 490, 1127
FauNDI CATATG 1 cut(s) 412
FbaI TGATCA 2 cut(s) 771, 934
Fnu4HI GCNGC 7 cut(s) 129, 147, 199, 213, 216, 225, 783
FokI GGATG 5 cut(s) 353, 536, 744, 850, 1043
FriOI GRGCYC 1 cut(s) 984
Fsp4HI GCNGC 7 cut(s) 129, 147, 199, 213, 216, 225, 783
FspBI CTAG 1 cut(s) 509
GlaI GCGC 2 cut(s) 437, 1057
GluI GCNGC 7 cut(s) 129, 147, 199, 213, 216, 225, 783
GsaI CCCAGC 1 cut(s) 1056
HaeII RGCGCY 1 cut(s) 1059
HaeIII GGCC 3 cut(s) 131, 207, 971
HapII CCGG 1 cut(s) 439
HhaI GCGC 2 cut(s) 438, 1058
Hin1II CATG 2 cut(s) 494, 1131
Hin6I GCGC 2 cut(s) 436, 1056
HinP1I GCGC 2 cut(s) 436, 1056
HinfI GANTC 1 cut(s) 579
HpaII CCGG 1 cut(s) 439
HphI GGTGA 1 cut(s) 944
Hpy166II GTNNAC 2 cut(s) 996, 1150
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 2 cut(s) 40, 1046
Hpy8I GTNNAC 2 cut(s) 996, 1150
HpyAV CCTTC 8 cut(s) 80, 118, 180, 312, 412, 680, 797, 958
HpyCH4III ACNGT 4 cut(s) 498, 714, 1041, 1105
HpyCH4IV ACGT 2 cut(s) 328, 825
HpyF10VI GCNNNNNNNGC 7 cut(s) 204, 221, 224, 398, 407, 908, 1139
HpyF3I CTNAG 2 cut(s) 158, 552
HpySE526I ACGT 2 cut(s) 328, 825
Hsp92II CATG 2 cut(s) 494, 1131
HspAI GCGC 2 cut(s) 436, 1056
Ksp22I TGATCA 2 cut(s) 771, 934
LguI GCTCTTC 1 cut(s) 265
Lsp1109I GCAGC 4 cut(s) 202, 211, 224, 769
LweI GCATC 3 cut(s) 331, 872, 1021
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 328, 825
MaeIII GTNAC 2 cut(s) 244, 1084
MbiI CCGCTC 1 cut(s) 275
MboII GAAGA 3 cut(s) 203, 282, 887
MfeI CAATTG 1 cut(s) 985
MflI RGATCY 3 cut(s) 260, 877, 1048
MhlI GDGCHC 1 cut(s) 984
MlsI TGGCCA 1 cut(s) 971
MluCI AATT 9 cut(s) 18, 32, 483, 570, 660, 703, 721, 775, 985
MluNI TGGCCA 1 cut(s) 971
MnlI CCTC 9 cut(s) 41, 248, 328, 331, 382, 418, 561, 752, 800
Mox20I TGGCCA 1 cut(s) 971
MscI TGGCCA 1 cut(s) 971
MseI TTAA 2 cut(s) 93, 573
Msp20I TGGCCA 1 cut(s) 971
MspA1I CMGCKG 2 cut(s) 198, 215
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 731
MunI CAATTG 1 cut(s) 985
Mva1269I GAATGC 2 cut(s) 288, 356
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 7 cut(s) 204, 221, 224, 398, 407, 908, 1139
NdeI CATATG 1 cut(s) 412
NlaIII CATG 2 cut(s) 494, 1131
PceI AGGCCT 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 265
PctI GAATGC 2 cut(s) 288, 356
PfeI GAWTC 1 cut(s) 579
PfoI TCCNGGA 1 cut(s) 729
PkrI GCNGC 7 cut(s) 130, 148, 200, 214, 217, 226, 784
Psp124BI GAGCTC 1 cut(s) 984
Psp6I CCWGG 1 cut(s) 729
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 1 cut(s) 729
PspPI GGNCC 1 cut(s) 1147
PstI CTGCAG 2 cut(s) 297, 820
PsuI RGATCY 3 cut(s) 260, 877, 1048
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 2 cut(s) 112, 495
RsaNI GTAC 2 cut(s) 111, 494
SacI GAGCTC 1 cut(s) 984
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 2 cut(s) 93, 573
SatI GCNGC 7 cut(s) 129, 147, 199, 213, 216, 225, 783
Sau96I GGNCC 1 cut(s) 1147
ScaI AGTACT 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 1 cut(s) 984
SfaNI GCATC 3 cut(s) 331, 872, 1021
SfcI CTRYAG 2 cut(s) 293, 816
SinI GGWCC 1 cut(s) 1147
SmlI CTYRAG 2 cut(s) 38, 306
SmoI CTYRAG 2 cut(s) 38, 306
Sse9I AATT 9 cut(s) 18, 32, 483, 570, 660, 703, 721, 775, 985
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 5 cut(s) 128, 146, 198, 275, 765
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 1 cut(s) 984
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 729
StyI CCWWGG 2 cut(s) 1026, 1059
TaaI ACNGT 4 cut(s) 498, 714, 1041, 1105
TaiI ACGT 2 cut(s) 331, 828
TaqI TCGA 1 cut(s) 280
TasI AATT 9 cut(s) 18, 32, 483, 570, 660, 703, 721, 775, 985
TatI WGTACW 2 cut(s) 110, 493
TauI GCSGC 3 cut(s) 131, 149, 201
TfiI GAWTC 1 cut(s) 579
Tru1I TTAA 2 cut(s) 93, 573
Tru9I TTAA 2 cut(s) 93, 573
TscAI CASTG 3 cut(s) 166, 503, 703
TseI GCWGC 4 cut(s) 212, 215, 224, 782
TspDTI ATGAA 5 cut(s) 248, 356, 476, 888, 941
TspRI CASTG 3 cut(s) 166, 503, 703
VpaK11BI GGWCC 1 cut(s) 1147
XagI CCTNNNNNAGG 1 cut(s) 885
XapI RAATTY 2 cut(s) 483, 703
XcmI CCANNNNNNNNNTGG 2 cut(s) 139, 955
XspI CTAG 1 cut(s) 509
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.