AT5G55570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012286
Physical Location & Seq
Reverse (-)
22514214 .. 22515458
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55570.2

Sequence Viewer

Length: 432 bp
ATGGCGACAATGGAGGCTTCTTCACTGTGTAGAGTTCCGTCTCTGTGGACCGTTAGATCAAGACCACGTCAGATAAAATCCACGGCTGGTTTCGTTTCTCCGGGAAGAAGAAGAAGCCGCGGCGGCGGCGGCGGCATGATGACGATGAGTAATCGACGGCTCAAAACGACGTCGGCTCTAAGTGAACTAGCTGACACGGTGGCGGAGACAGGCAAATCGGAGATTACGTGGCAGATTATAGTTGGAACCATTGCTGGAATCATACCATTCGTTGTTGCAGGTGTTGAATTCAGCAAAAGAATAATTGCACAGAAGAGATGTGAAGAATGTGGAGGAACAGGACTTGTTTCTCGAGACAAAAAGTATTTTCGTTGTCCTGAATGTGGTGGGTTTCTTCCATGGCAGTCATGGAGAAGATTCTTTACAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.74

Weight (kDa)

10.63

Isoelectric Point (pI)

69.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
AatII GACGTC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 269
AccII CGCG 1 cut(s) 120
AciI CCGC 7 cut(s) 118, 120, 123, 126, 129, 132, 203
AcsI RAATTY 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 1 cut(s) 287
AjiI CACGTC 1 cut(s) 68
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
Alw26I GTCTC 3 cut(s) 45, 200, 348
Ama87I CYCGRG 1 cut(s) 351
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 102
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 48
BarI GAAGNNNNNNTAC 1 cut(s) 406
BceAI ACGGC 2 cut(s) 99, 173
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 3 cut(s) 45, 200, 348
BfaI CTAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 269
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 6 cut(s) 118, 121, 124, 127, 130, 133
BlsI GCNGC 6 cut(s) 119, 122, 125, 128, 131, 134
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 351
BmgBI CACGTC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 81, 118, 398
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 249
BseDI CCNNGG 3 cut(s) 81, 118, 398
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 3 cut(s) 45, 200, 348
BsmBI CGTCTC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 351
Bsp143I GATC 1 cut(s) 56
Bsp19I CCATGG 1 cut(s) 398
BspACI CCGC 7 cut(s) 118, 120, 123, 126, 129, 132, 203
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 81, 118, 398
BssMI GATC 1 cut(s) 56
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 398
Bst4CI ACNGT 3 cut(s) 27, 52, 199
Bst6I CTCTTC 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 3 cut(s) 81, 118, 398
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 3 cut(s) 45, 200, 348
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 123, 126, 129, 132
BstSCI CCNGG 1 cut(s) 100
BstUI CGCG 1 cut(s) 120
BtgI CCRYGG 3 cut(s) 81, 118, 398
BtrI CACGTC 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 48
Cfr42I CCGCGG 1 cut(s) 121
CviAII CATG 3 cut(s) 136, 399, 408
CviJI RGCY 7 cut(s) 17, 86, 117, 160, 176, 191, 429
CviKI_1 RGCY 7 cut(s) 17, 86, 117, 160, 176, 191, 429
DdeI CTNAG 1 cut(s) 179
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 351
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 3 cut(s) 139, 402, 411
FaiI YATR 5 cut(s) 137, 239, 263, 400, 409
FatI CATG 3 cut(s) 135, 398, 407
Fnu4HI GCNGC 6 cut(s) 118, 121, 124, 127, 130, 133
Fsp4HI GCNGC 6 cut(s) 118, 121, 124, 127, 130, 133
FspBI CTAG 1 cut(s) 188
GluI GCNGC 6 cut(s) 118, 121, 124, 127, 130, 133
HapII CCGG 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 3 cut(s) 139, 402, 411
HinfI GANTC 2 cut(s) 258, 417
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 2 cut(s) 48, 185
Hpy188I TCNGA 2 cut(s) 72, 220
Hpy188III TCNNGA 4 cut(s) 60, 351, 353, 377
Hpy8I GTNNAC 2 cut(s) 48, 185
Hpy99I CGWCG 3 cut(s) 159, 172, 175
HpyCH4III ACNGT 3 cut(s) 27, 52, 199
HpyCH4IV ACGT 3 cut(s) 67, 170, 227
HpyCH4V TGCA 2 cut(s) 278, 308
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 126, 129, 132
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 3 cut(s) 67, 170, 227
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 139, 402, 411
KspI CCGCGG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 72, 114, 195, 240, 264, 324, 390, 411
MaeI CTAG 1 cut(s) 188
MaeII ACGT 3 cut(s) 67, 170, 227
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 8 cut(s) 12, 117, 120, 123, 325, 335, 386, 426
MluCI AATT 2 cut(s) 287, 303
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 2 cut(s) 7, 326
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 4 cut(s) 123, 126, 129, 132
NciI CCSGG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 398
NdeII GATC 1 cut(s) 56
NlaIII CATG 3 cut(s) 139, 402, 411
NlaIV GGNNCC 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 351
PaqCI CACCTGC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PfeI GAWTC 2 cut(s) 258, 417
PflFI GACNNNGTC 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 6 cut(s) 119, 122, 125, 128, 131, 134
Ppu21I YACGTR 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 66
SacII CCGCGG 1 cut(s) 121
SatI GCNGC 6 cut(s) 118, 121, 124, 127, 130, 133
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 102
SetI ASST 5 cut(s) 70, 173, 193, 230, 283
Sfr274I CTCGAG 1 cut(s) 351
Sfr303I CCGCGG 1 cut(s) 121
SgrBI CCGCGG 1 cut(s) 121
SinI GGWCC 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 2 cut(s) 287, 303
SsiI CCGC 7 cut(s) 118, 120, 123, 126, 129, 132, 203
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 3 cut(s) 27, 52, 199
TaiI ACGT 3 cut(s) 70, 173, 230
TaqI TCGA 2 cut(s) 154, 352
TasI AATT 2 cut(s) 287, 303
TauI GCSGC 6 cut(s) 120, 123, 126, 129, 132, 135
TfiI GAWTC 2 cut(s) 258, 417
TscAI CASTG 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 405
XhoI CTCGAG 1 cut(s) 351
XspI CTAG 1 cut(s) 188
ZraI GACGTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.