RLG00000034146

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012286
Physical Location & Seq
Reverse (-)
37319021 .. 37319837
817 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034146

Sequence Viewer

Length: 378 bp
ATGGAAGCCTCGATCTCCTCCTTCACATGTCTCATCAGAACCCCAACCAAGTCCAACTCCAGCACAGCTATATTTCCAAGCATTAACATCACAAAACCATATGATTCACGCTCTATTACCAGAACAAAATGCCACAACCTCGCTTTTGCTATAAACACTACTCCAACCCTCCGCGGCAGAAAAGCTTGGAAGACTGCAGCTATCGAAGATGTTTCCGGCGCTATAACGGATCCGGGACCGGTCGTCCTCACCTGGCAAATTGTCGTCGGAGCTATAGCTGGAGTTACACCTTTTGTGGTAGCAGGGATTGAATTCAGCAAAAGAATTGTGGATTTCTCCCTTGGCAATCATGGAAAAGATTCTTTACTGGCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A2L_zn_ribbon

Protein Analysis

126

Amino Acids

13.35

Weight (kDa)

9.62

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 172, 174
AclWI GGATC 2 cut(s) 224, 237
AcsI RAATTY 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 311
AhdI GACNNNNNGTC 1 cut(s) 242
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 5 cut(s) 68, 185, 200, 272, 278
AluI AGCT 5 cut(s) 68, 185, 200, 272, 278
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 2 cut(s) 224, 237
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 358
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 236
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 236
BamHI GGATCC 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 253
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 195, 273
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 2 cut(s) 175, 198
BlsI GCNGC 2 cut(s) 176, 199
Bme1390I CCNGG 2 cut(s) 234, 253
Bme18I GGWCC 1 cut(s) 236
BmeRI GACNNNNNGTC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 231, 237
BmrFI CCNGG 2 cut(s) 234, 253
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 2 cut(s) 43, 300
BpuMI CCSGG 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 172, 340
BsaWI WCCGGW 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 2 cut(s) 172, 340
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 1 cut(s) 243
BshTI ACCGGT 1 cut(s) 238
BsiEI CGRYCG 1 cut(s) 243
BsiSI CCGG 3 cut(s) 216, 233, 239
BslFI GGGAC 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 12, 229
BspACI CCGC 2 cut(s) 172, 174
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 231, 237
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 224, 237
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 172, 340
BssMI GATC 2 cut(s) 12, 229
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 15, 232
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 12, 229
BstMCI CGRYCG 1 cut(s) 243
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 232, 251
BstSFI CTRYAG 2 cut(s) 195, 273
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 172
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 236
Cfr42I CCGCGG 1 cut(s) 175
CspAI ACCGGT 1 cut(s) 238
CviAII CATG 2 cut(s) 27, 350
CviJI RGCY 7 cut(s) 8, 68, 185, 200, 272, 278, 371
CviKI_1 RGCY 7 cut(s) 8, 68, 185, 200, 272, 278, 371
DpnI GATC 2 cut(s) 14, 231
DpnII GATC 2 cut(s) 12, 229
DriI GACNNNNNGTC 1 cut(s) 242
Eam1105I GACNNNNNGTC 1 cut(s) 242
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 2 cut(s) 30, 353
FaiI YATR 8 cut(s) 28, 71, 100, 102, 152, 224, 275, 351
FaqI GGGAC 1 cut(s) 249
FatI CATG 2 cut(s) 26, 349
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 175, 198
Fsp4HI GCNGC 2 cut(s) 175, 198
GlaI GCGC 1 cut(s) 220
GluI GCNGC 2 cut(s) 175, 198
GsuI CTGGAG 2 cut(s) 43, 300
HaeII RGCGCY 1 cut(s) 222
HapII CCGG 3 cut(s) 216, 233, 239
HhaI GCGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 30, 353
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 2 cut(s) 104, 359
HpaII CCGG 3 cut(s) 216, 233, 239
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 38, 269
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 197
Hsp92II CATG 2 cut(s) 30, 353
HspAI GCGC 1 cut(s) 219
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 2 cut(s) 12, 229
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 14, 231
MboI GATC 2 cut(s) 12, 229
MboII GAAGA 2 cut(s) 202, 218
MflI RGATCY 1 cut(s) 229
MluCI AATT 4 cut(s) 258, 311, 324, 373
MmeI TCCRAC 3 cut(s) 78, 188, 247
MnlI CCTC 5 cut(s) 19, 28, 149, 179, 257
MroXI GAANNNNTTC 1 cut(s) 358
MseI TTAA 2 cut(s) 84, 376
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 3 cut(s) 216, 233, 239
MspR9I CCNGG 2 cut(s) 234, 253
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 174
NciI CCSGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 100
NdeII GATC 2 cut(s) 12, 229
NlaIII CATG 2 cut(s) 30, 353
NlaIV GGNNCC 2 cut(s) 231, 237
NspI RCATGY 1 cut(s) 30
PciI ACATGT 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 104, 359
PfoI TCCNGGA 1 cut(s) 232
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 2 cut(s) 176, 199
PscI ACATGT 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 231, 237
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 229
SacII CCGCGG 1 cut(s) 175
SaqAI TTAA 2 cut(s) 84, 376
SatI GCNGC 2 cut(s) 175, 198
Sau3AI GATC 2 cut(s) 12, 229
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 234, 253
SetI ASST 8 cut(s) 70, 141, 187, 202, 254, 274, 280, 292
SfcI CTRYAG 2 cut(s) 195, 273
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
SinI GGWCC 1 cut(s) 236
Sse9I AATT 4 cut(s) 258, 311, 324, 373
SsiI CCGC 2 cut(s) 172, 174
StyD4I CCNGG 2 cut(s) 232, 251
StyI CCWWGG 1 cut(s) 340
TaqI TCGA 2 cut(s) 11, 204
TasI AATT 4 cut(s) 258, 311, 324, 373
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 2 cut(s) 104, 359
Tru1I TTAA 2 cut(s) 84, 376
Tru9I TTAA 2 cut(s) 84, 376
TseI GCWGC 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 242
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 311
XceI RCATGY 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.