FvH4_3g24050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012286
Physical Location & Seq
Reverse (-)
17091686 .. 17092816
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24050.t1

Sequence Viewer

Length: 465 bp
ATGGAAGCCTCGATCTCCTCCTTCACAATCATCAGAACCCCAACCAAGTCCAACTCCAGCACAACTATATTTCCAAGCATTAACATCACAAAACCACATCTTTCTTGCTTTACCACAACAAAATGCCACAACCTCGCTTTCGCTGTGGTGAACAGTCTAAACAGGTCTACTCGGACCCGTCGCGGCAGAAAAGCTTGGAAGACTGCAGCCGTTGAAGATGTCACCGGCGCTATAACGGATCCGGGGCCGGTCGTCCTCACCTGGCAAATCGTCGTCGGAGCTATAGCTGGAGTTACACCTTTTGTGGTCGCAGGGATTGAATTCAGCAAAAGAATTATAGCACAACAGAGATGCGAGGTGTGTGGAGGGTCAGGACTTGTTTTGACGAAAGAAAACTATGTGAAATGTCCTGGATGTGGTGGATTTCTCCCTTGGCAATCATGGAGAAGATTCTTTACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A2L_zn_ribbon

Protein Analysis

155

Amino Acids

16.73

Weight (kDa)

9.99

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AccII CGCG 1 cut(s) 183
AciI CCGC 1 cut(s) 183
AclWI GGATC 2 cut(s) 233, 246
AcsI RAATTY 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 2 cut(s) 215, 320
AjnI CCWGG 2 cut(s) 260, 409
AluBI AGCT 3 cut(s) 194, 281, 287
AluI AGCT 3 cut(s) 194, 281, 287
AlwI GGATC 2 cut(s) 233, 246
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 320
AspLEI GCGC 1 cut(s) 230
AspS9I GGNCC 2 cut(s) 174, 245
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 3 cut(s) 160, 214, 250
AvaII GGWCC 1 cut(s) 174
BamHI GGATCC 1 cut(s) 238
BarI GAAGNNNNNNTAC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 2 cut(s) 262, 411
BcnI CCSGG 1 cut(s) 243
BfmI CTRYAG 2 cut(s) 204, 282
BfoI RGCGCY 1 cut(s) 231
BisI GCNGC 2 cut(s) 184, 207
BlsI GCNGC 2 cut(s) 185, 208
Bme1390I CCNGG 3 cut(s) 243, 262, 411
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 174, 245
BmiI GGNNCC 3 cut(s) 176, 240, 246
BmrFI CCNGG 3 cut(s) 243, 262, 411
BmsI GCATC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 2 cut(s) 40, 309
BpuMI CCSGG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 242, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse118I RCCGGY 2 cut(s) 224, 247
Bse1I ACTGG 1 cut(s) 463
BseBI CCWGG 2 cut(s) 262, 411
BseDI CCNNGG 2 cut(s) 242, 431
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 1 cut(s) 247
BsiEI CGRYCG 1 cut(s) 252
BsiSI CCGG 3 cut(s) 225, 242, 248
BslI CCNNNNNNNGG 1 cut(s) 416
BsnI GGCC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 12, 238
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 247
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 3 cut(s) 176, 240, 246
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 2 cut(s) 233, 246
BsrFI RCCGGY 2 cut(s) 224, 247
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 2 cut(s) 224, 247
BssECI CCNNGG 2 cut(s) 242, 431
BssMI GATC 2 cut(s) 12, 238
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 262, 411
Bst4CI ACNGT 1 cut(s) 155
BstF5I GGATG 1 cut(s) 419
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 1 cut(s) 230
BstKTI GATC 2 cut(s) 15, 241
BstMBI GATC 2 cut(s) 12, 238
BstMCI CGRYCG 1 cut(s) 252
BstNI CCWGG 2 cut(s) 262, 411
BstSCI CCNGG 3 cut(s) 241, 260, 409
BstSFI CTRYAG 2 cut(s) 204, 282
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 419
CfoI GCGC 1 cut(s) 230
Cfr10I RCCGGY 2 cut(s) 224, 247
Cfr13I GGNCC 2 cut(s) 174, 245
CviAII CATG 1 cut(s) 441
CviJI RGCY 7 cut(s) 8, 194, 209, 247, 281, 287, 462
CviKI_1 RGCY 7 cut(s) 8, 194, 209, 247, 281, 287, 462
DpnI GATC 2 cut(s) 14, 240
DpnII GATC 2 cut(s) 12, 238
Eco130I CCWWGG 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 260, 409
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 1 cut(s) 444
FaiI YATR 6 cut(s) 68, 233, 284, 338, 399, 442
FatI CATG 1 cut(s) 440
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 2 cut(s) 184, 207
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 2 cut(s) 184, 207
GlaI GCGC 1 cut(s) 229
GluI GCNGC 2 cut(s) 184, 207
GsuI CTGGAG 2 cut(s) 40, 309
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 1 cut(s) 247
HapII CCGG 3 cut(s) 225, 242, 248
HhaI GCGC 1 cut(s) 230
Hin1II CATG 1 cut(s) 444
Hin6I GCGC 1 cut(s) 228
HinP1I GCGC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 1 cut(s) 450
HpaII CCGG 3 cut(s) 225, 242, 248
HphI GGTGA 3 cut(s) 160, 214, 250
Hpy166II GTNNAC 2 cut(s) 151, 168
Hpy188I TCNGA 3 cut(s) 35, 174, 278
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 2 cut(s) 151, 168
Hpy99I CGWCG 3 cut(s) 183, 275, 278
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 206
Hsp92II CATG 1 cut(s) 444
HspAI GCGC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 12, 238
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 341
MaeIII GTNAC 2 cut(s) 220, 292
MalI GATC 2 cut(s) 14, 240
MboI GATC 2 cut(s) 12, 238
MboII GAAGA 3 cut(s) 211, 227, 459
MflI RGATCY 1 cut(s) 238
MluCI AATT 2 cut(s) 320, 333
MmeI TCCRAC 2 cut(s) 75, 256
MnlI CCTC 6 cut(s) 19, 28, 143, 266, 349, 359
MseI TTAA 1 cut(s) 81
MspI CCGG 3 cut(s) 225, 242, 248
MspR9I CCNGG 3 cut(s) 243, 262, 411
MvaI CCWGG 2 cut(s) 262, 411
MvnI CGCG 1 cut(s) 183
NciI CCSGG 1 cut(s) 243
NdeII GATC 2 cut(s) 12, 238
NlaIII CATG 1 cut(s) 444
NlaIV GGNNCC 3 cut(s) 176, 240, 246
NmuCI GTSAC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 450
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 2 cut(s) 185, 208
Psp6I CCWGG 2 cut(s) 260, 409
PspGI CCWGG 2 cut(s) 260, 409
PspN4I GGNNCC 3 cut(s) 176, 240, 246
PspPI GGNCC 2 cut(s) 174, 245
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 238
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 184, 207
Sau3AI GATC 2 cut(s) 12, 238
Sau96I GGNCC 2 cut(s) 174, 245
ScrFI CCNGG 3 cut(s) 243, 262, 411
SetI ASST 8 cut(s) 135, 167, 196, 263, 283, 289, 301, 360
SfaNI GCATC 1 cut(s) 341
SfcI CTRYAG 2 cut(s) 204, 282
SgrAI CRCCGGYG 1 cut(s) 224
SinI GGWCC 1 cut(s) 174
Sse9I AATT 2 cut(s) 320, 333
SsiI CCGC 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 241, 260, 409
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 11
TasI AATT 2 cut(s) 320, 333
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.