Rroxscaffold_6G00401810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012286
Physical Location & Seq
Forward (+)
24174738 .. 24179017
4280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401810.1

Sequence Viewer

Length: 396 bp
ATGACCAGTGGTGGTGCCATTAATTTGGTGCCAATATCAAAATGGAAGCCTCGGATCTCTTCCTTCACATTCATCATAACCCCAACCAAGTCCAACTCTAGCACAGCCATATTTCCAAGCATTAACATCACAAAACCATATGATTCATGCTCCATTACCATAACAAAATGCCACAACCACACTTTTGCTATAAACACTACTCCAACCCGCCGCCGAGAAAAGCTTGAAAAGCTGCGGCTATTGAAGATGTTTCCGCGCTATAACGGATCGAGACCGGTCGTCCTCACCCGGCAAATTGTCTCTAACAACCTTGATGGCTCGATGACCGAGATGGTGATGACGACATTACCAGATTTTGAAGAAGAAAATATGCGAGAAGGGCTTTGTTTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A2L_zn_ribbon

Protein Analysis

131

Amino Acids

14.92

Weight (kDa)

9.87

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 14, 28
AccII CGCG 1 cut(s) 256
AciI CCGC 4 cut(s) 208, 211, 235, 254
AclWI GGATC 2 cut(s) 62, 274
AgeI ACCGGT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 227, 244, 359
AhdI GACNNNNNGTC 1 cut(s) 278
AluBI AGCT 2 cut(s) 223, 232
AluI AGCT 2 cut(s) 223, 232
Alw26I GTCTC 2 cut(s) 265, 304
AlwI GGATC 2 cut(s) 62, 274
ApeKI GCWGC 1 cut(s) 232
AseI ATTAAT 1 cut(s) 21
AsiGI ACCGGT 1 cut(s) 274
AspLEI GCGC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 277, 346
BanI GGYRCC 2 cut(s) 14, 28
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 308, 325
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 265, 304
BfaI CTAG 1 cut(s) 99
BisI GCNGC 3 cut(s) 211, 233, 236
BlsI GCNGC 3 cut(s) 212, 234, 237
Bme1390I CCNGG 1 cut(s) 289
BmeRI GACNNNNNGTC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 16, 30
BmrFI CCNGG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 50
BseNI ACTGG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 279
BshNI GGYRCC 2 cut(s) 14, 28
BshTI ACCGGT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 279
BsiSI CCGG 2 cut(s) 275, 289
BsmAI GTCTC 2 cut(s) 265, 304
Bso31I GGTCTC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 54, 266
BspACI CCGC 4 cut(s) 208, 211, 235, 254
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 16, 30
BspPI GGATC 2 cut(s) 62, 274
BspT107I GGYRCC 2 cut(s) 14, 28
BspTNI GGTCTC 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 6
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 2 cut(s) 54, 266
Bst6I CTCTTC 1 cut(s) 64
BstFNI CGCG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 57, 269
BstMAI GTCTC 2 cut(s) 265, 304
BstMBI GATC 2 cut(s) 54, 266
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 229, 379
BstSCI CCNGG 1 cut(s) 287
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 274
CspAI ACCGGT 1 cut(s) 274
CviAII CATG 1 cut(s) 147
CviJI RGCY 7 cut(s) 49, 107, 223, 232, 238, 318, 382
CviKI_1 RGCY 7 cut(s) 49, 107, 223, 232, 238, 318, 382
DpnI GATC 2 cut(s) 56, 268
DpnII GATC 2 cut(s) 54, 266
DriI GACNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 64
Eam1105I GACNNNNNGTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 265
FaeI CATG 1 cut(s) 150
FaiI YATR 9 cut(s) 77, 110, 139, 141, 148, 161, 191, 261, 371
FatI CATG 1 cut(s) 146
FauI CCCGC 1 cut(s) 215
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 3 cut(s) 211, 233, 236
Fsp4HI GCNGC 3 cut(s) 211, 233, 236
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 257
GluI GCNGC 3 cut(s) 211, 233, 236
HapII CCGG 2 cut(s) 275, 289
HhaI GCGC 1 cut(s) 258
Hin1II CATG 1 cut(s) 150
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 143
HpaII CCGG 2 cut(s) 275, 289
HphI GGTGA 2 cut(s) 277, 346
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 73, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 379
Hsp92II CATG 1 cut(s) 150
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 54, 266
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 4 cut(s) 19, 288, 302, 363
Lsp1109I GCAGC 1 cut(s) 219
MaeI CTAG 1 cut(s) 99
MalI GATC 2 cut(s) 56, 268
MboI GATC 2 cut(s) 54, 266
MboII GAAGA 4 cut(s) 51, 256, 371, 374
MflI RGATCY 1 cut(s) 54
MluCI AATT 2 cut(s) 22, 294
MmeI TCCRAC 2 cut(s) 117, 227
MnlI CCTC 2 cut(s) 60, 293
MseI TTAA 2 cut(s) 21, 123
MspI CCGG 2 cut(s) 275, 289
MspR9I CCNGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 229, 379
NciI CCSGG 1 cut(s) 289
NdeI CATATG 1 cut(s) 139
NdeII GATC 2 cut(s) 54, 266
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 2 cut(s) 16, 30
NmeAIII GCCGAG 1 cut(s) 239
PfeI GAWTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 3 cut(s) 212, 234, 237
PshBI ATTAAT 1 cut(s) 21
PspN4I GGNNCC 2 cut(s) 16, 30
PsuI RGATCY 1 cut(s) 54
SaqAI TTAA 2 cut(s) 21, 123
SatI GCNGC 3 cut(s) 211, 233, 236
Sau3AI GATC 2 cut(s) 54, 266
ScrFI CCNGG 1 cut(s) 289
SetI ASST 3 cut(s) 225, 234, 312
Sse9I AATT 2 cut(s) 22, 294
SsiI CCGC 4 cut(s) 208, 211, 235, 254
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 287
TaqI TCGA 3 cut(s) 269, 320, 391
TaqII GACCGA 1 cut(s) 341
TasI AATT 2 cut(s) 22, 294
TauI GCSGC 2 cut(s) 213, 238
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 21, 123
Tru9I TTAA 2 cut(s) 21, 123
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 232
TspDTI ATGAA 2 cut(s) 61, 135
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 13
VspI ATTAAT 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.