Rh5DG302600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012286
Physical Location & Seq
Reverse (-)
38035717 .. 38037537
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG302600.1

Sequence Viewer

Length: 351 bp
ATGGAAGCCTCGATCTCCTCCTTCACACTCATCAGAACCCCAACCAAGTCCAACTCCAGCACAGCTATATTTCCAAGCATTAACATCACAAAACCATATGATTCATGCTCTATTACCAGAACAAAATGCCACAACCTCGCTTTTGCTATAAACACTACTCCAACCCTCCGCGGCAGAAAAGCTTGGAAGACTGCAGCTATCGAAGATGTTTCCGGCGCTATAACGGATCCGGGCCCGGTCGTCCTCACCTGGCAAATTGTCGTCGGAGCTATAGTACGTTTGTGTTTTTGCATGCAGCTGGAGTTACACCTTTTGTGGTGGCAGGGATTGAATTCAGCAAAAGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A2L_zn_ribbon

Protein Analysis

116

Amino Acids

12.77

Weight (kDa)

9.1

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 2 cut(s) 169, 171
AclWI GGATC 2 cut(s) 221, 234
AcsI RAATTY 1 cut(s) 331
AfaI GTAC 1 cut(s) 276
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 5 cut(s) 65, 182, 197, 269, 298
AluI AGCT 5 cut(s) 65, 182, 197, 269, 298
AlwI GGATC 2 cut(s) 221, 234
AoxI GGCC 1 cut(s) 232
ApaI GGGCCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 194, 295
ApoI RAATTY 1 cut(s) 331
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 232, 233
AsuC2I CCSGG 2 cut(s) 231, 236
AsuHPI GGTGA 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 236
BamHI GGATCC 1 cut(s) 226
BanII GRGCYC 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 206, 307
BciT130I CCWGG 1 cut(s) 250
BcnI CCSGG 2 cut(s) 231, 236
BfmI CTRYAG 2 cut(s) 192, 270
BfoI RGCGCY 1 cut(s) 219
BisI GCNGC 3 cut(s) 172, 195, 296
BlsI GCNGC 3 cut(s) 173, 196, 297
Bme1390I CCNGG 3 cut(s) 231, 236, 250
BmgT120I GGNCC 2 cut(s) 232, 233
BmiI GGNNCC 2 cut(s) 228, 234
BmrFI CCNGG 3 cut(s) 231, 236, 250
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 2 cut(s) 40, 320
BpuMI CCSGG 2 cut(s) 231, 236
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 7
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 2 cut(s) 206, 307
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 240
BsiSI CCGG 3 cut(s) 213, 230, 236
BsnI GGCC 1 cut(s) 234
Bsp120I GGGCCC 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 2 cut(s) 12, 226
BspACI CCGC 2 cut(s) 169, 171
BspANI GGCC 1 cut(s) 234
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 228, 234
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 221, 234
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 2 cut(s) 12, 226
Bst2UI CCWGG 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 2 cut(s) 15, 229
BstMBI GATC 2 cut(s) 12, 226
BstMCI CGRYCG 1 cut(s) 240
BstNI CCWGG 1 cut(s) 250
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 3 cut(s) 229, 234, 248
BstSFI CTRYAG 2 cut(s) 192, 270
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 206, 307
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 293
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 232, 233
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 275
CviAII CATG 2 cut(s) 105, 292
CviJI RGCY 7 cut(s) 8, 65, 182, 197, 234, 269, 298
CviKI_1 RGCY 7 cut(s) 8, 65, 182, 197, 234, 269, 298
CviQI GTAC 1 cut(s) 275
DpnI GATC 2 cut(s) 14, 228
DpnII GATC 2 cut(s) 12, 226
Eco24I GRGCYC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 2 cut(s) 108, 295
FaiI YATR 8 cut(s) 68, 97, 99, 106, 149, 221, 272, 293
FatI CATG 2 cut(s) 104, 291
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 172, 195, 296
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 172, 195, 296
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 172, 195, 296
GsuI CTGGAG 2 cut(s) 40, 320
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 1 cut(s) 234
HapII CCGG 3 cut(s) 213, 230, 236
HhaI GCGC 1 cut(s) 218
Hin1II CATG 2 cut(s) 108, 295
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 1 cut(s) 101
HpaII CCGG 3 cut(s) 213, 230, 236
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 35, 266
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 194, 291, 295
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 2 cut(s) 108, 295
HspAI GCGC 1 cut(s) 216
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 12, 226
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 9 cut(s) 70, 130, 226, 235, 243, 249, 262, 284, 308
Lsp1109I GCAGC 2 cut(s) 206, 307
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 303
MalI GATC 2 cut(s) 14, 228
MboI GATC 2 cut(s) 12, 226
MboII GAAGA 2 cut(s) 199, 215
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 3 cut(s) 255, 331, 344
MmeI TCCRAC 3 cut(s) 75, 185, 244
MnlI CCTC 5 cut(s) 19, 28, 146, 176, 254
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 2 cut(s) 171, 298
MspI CCGG 3 cut(s) 213, 230, 236
MspR9I CCNGG 3 cut(s) 231, 236, 250
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 1 cut(s) 171
NciI CCSGG 2 cut(s) 231, 236
NdeI CATATG 1 cut(s) 97
NdeII GATC 2 cut(s) 12, 226
NlaIII CATG 2 cut(s) 108, 295
NlaIV GGNNCC 2 cut(s) 228, 234
NspI RCATGY 1 cut(s) 295
PaeI GCATGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 3 cut(s) 173, 196, 297
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 228, 234
PspOMI GGGCCC 1 cut(s) 232
PspPI GGNCC 2 cut(s) 232, 233
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 3 cut(s) 172, 195, 296
Sau3AI GATC 2 cut(s) 12, 226
Sau96I GGNCC 2 cut(s) 232, 233
ScrFI CCNGG 3 cut(s) 231, 236, 250
SduI GDGCHC 1 cut(s) 236
SetI ASST 9 cut(s) 67, 138, 184, 199, 251, 271, 280, 300, 312
SfcI CTRYAG 2 cut(s) 192, 270
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SphI GCATGC 1 cut(s) 295
Sse9I AATT 3 cut(s) 255, 331, 344
SsiI CCGC 2 cut(s) 169, 171
StyD4I CCNGG 3 cut(s) 229, 234, 248
TaiI ACGT 1 cut(s) 280
TaqI TCGA 2 cut(s) 11, 201
TasI AATT 3 cut(s) 255, 331, 344
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 2 cut(s) 194, 295
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 239
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.