Rorug05G0203300

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
20203919 .. 20206371
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0203300.1

Sequence Viewer

Length: 1392 bp
ATGGATTCGGAGTCTAAGAGACCAGCAATAGCTGAAGATAGAATCAGTGCATTACCGGATGCAGTTCTATGTCACATTTTGTCCTGCCTCCAACCAGAATTTAGAAAGTGTGCTGTCAGTACCAGCATTTTGTCCAAAAGGTGGAAGAACATATGGGCTTATGTTCCTAATCTCTACTTCGACAATCATGATTTCCCCTCCTCAGCTGATTTCATAGCGTTTGTTGATCGTGCTCTTCAGATTCGTAACTCGTCCGCGATTCAAAAATTCCATCTCCATTTCGATGGTTGTCAAGCTGAGGATTTCTGTCATATTGATGATTGGATCAGCACTGCCGTCAAGTGTAATGTGGTGGAACTAGATCTTTCAGTCAATCCACATGGAGAAGAGATGTTTGAGTTGCCTGAAAGCCTGTTGACTTGTGGAACTCTCATGGTTTGGAAGCTGTGGTCAAATCCTTTAATAAACATTCCTAAAGCAGGGTGTTACCCAAGTCTAAAAGAACTCCATCTTAAATTTATGTATCCTGATCTCTTAAATCCTGAAAATGACTTCATGGATTTTTCTCAGTTCCCTGTGCTTGAATACTTGTGGATCGATGGATATCTTGGATTCAAAAGTTTTACTTTCATCATCTCTGGGCCTGAATTGAAGACTTTAAGGATAAATGCAAAGAGTGAAAATGATATTCGTGTAGCACACGTTTTTTATATTAATGCTCCAAAGCTTGAAAGGCTTGATGTCCAAGATGATTTTCTGTCACATTATACCTTTGTGAATACAAGATCTCTAGTCGAAGCCAATGTTCGTGCCTATCCTAAACGGGCAACCGAGTTTCTGGCAGGAATTTCCAGTGTTAAATGTTTGGCTATTTCATCTCCTTTCCTTAGGGCTTGTTCTGTGGCTGCTTTTGATAATCTGCGTGAGCTGAAGGTGGTTCTCGAGATGGACTATTTTAAGTGGAGTTTGCTGACCAAGGTGCTGGGGATATTATCTAATCTAGAGTCCCTTGTGGTGGAACATGAGAGATATGAGCCCCCCTGCTATCGTGGAGATTCCGAATTGGTTATTAGACTTGAAGAGTGTCAAGAAAGTAAAGAAGTTTTTGCAGACGTGCTGCGTTGGAGTCCACCAGAGTTTGTGCCCAACTGTTTGCTGTCACACCTCAAGACCATCTGCATAAAGGGATTCAAGGGAAGCCGATCCTTTGGATATCGAGACGAGAAGGAAGTGATTAAGTACTTGTTAAAGAATGGCCAAGTTTTGCAGAAAATGACTATTTATTCTCCAGGTCTTTCTAGAGGGGCAGAGAAGAAGTTAGACAAGGAACTTTCAGTGCTTGAATGGGGTTCAAAGACTTGTCAAGTTGAAGTTATCACGAAGTTAGTTTGA

Protein Analysis

463

Amino Acids

53.04

Weight (kDa)

5.85

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 83 - 341 4.4e-07 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 105 - 255 1.7e-08 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 378 - 427 3.7e-15 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 141
AccII CGCG 1 cut(s) 257
AciI CCGC 1 cut(s) 255
AclWI GGATC 3 cut(s) 332, 602, 1197
AcoI YGGCCR 1 cut(s) 1255
AcsI RAATTY 4 cut(s) 98, 266, 515, 846
AcuI CTGAAG 3 cut(s) 54, 221, 950
AfaI GTAC 2 cut(s) 121, 1241
AfiI CCNNNNNNNGG 3 cut(s) 141, 479, 1015
AflIII ACRYGT 1 cut(s) 700
AjiI CACGTC 1 cut(s) 1114
AjnI CCWGG 1 cut(s) 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 738, 770
AluBI AGCT 6 cut(s) 32, 206, 296, 445, 727, 928
AluI AGCT 6 cut(s) 32, 206, 296, 445, 727, 928
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 13, 1212
AlwI GGATC 3 cut(s) 332, 602, 1197
Ama87I CYCGRG 1 cut(s) 941
AoxI GGCC 2 cut(s) 641, 1255
ApeKI GCWGC 2 cut(s) 905, 1117
ApoI RAATTY 4 cut(s) 98, 266, 515, 846
AseI ATTAAT 1 cut(s) 714
AspS9I GGNCC 1 cut(s) 641
AvaI CYCGRG 1 cut(s) 941
AxyI CCTNAGG 1 cut(s) 887
BaeGI GKGCMC 1 cut(s) 1146
BalI TGGCCA 1 cut(s) 1257
BanII GRGCYC 1 cut(s) 1038
BbsI GAAGAC 1 cut(s) 659
Bbv12I GWGCWC 1 cut(s) 235
BbvCI CCTCAGC 2 cut(s) 202, 297
BbvI GCAGC 2 cut(s) 892, 1104
BccI CCATC 6 cut(s) 278, 279, 516, 593, 940, 1181
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 1290
BciVI GTATCC 1 cut(s) 534
BcoDI GTCTC 2 cut(s) 13, 1212
BfaI CTAG 4 cut(s) 359, 791, 1001, 1299
BfuI GTATCC 1 cut(s) 534
BglII AGATCT 2 cut(s) 361, 785
BisI GCNGC 2 cut(s) 906, 1118
BlsI GCNGC 2 cut(s) 907, 1119
BmcAI AGTACT 1 cut(s) 1241
Bme1390I CCNGG 1 cut(s) 1290
BmeT110I CYCGRG 1 cut(s) 941
BmgBI CACGTC 1 cut(s) 1114
BmgT120I GGNCC 1 cut(s) 641
BmrFI CCNGG 1 cut(s) 1290
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 659
BpmI CTGGAG 1 cut(s) 1272
Bpu10I CCTNAGC 2 cut(s) 202, 297
BpuEI CTTGAG 1 cut(s) 1151
Bsa29I ATCGAT 1 cut(s) 597
BsaBI GATNNNNATC 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 975
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 479, 1015
Bse1I ACTGG 1 cut(s) 852
Bse21I CCTNAGG 1 cut(s) 887
Bse8I GATNNNNATC 1 cut(s) 603
BseBI CCWGG 1 cut(s) 1290
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 975
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 3 cut(s) 141, 479, 1015
BseMII CTCAG 3 cut(s) 216, 288, 581
BseNI ACTGG 1 cut(s) 852
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 1146
BseXI GCAGC 2 cut(s) 892, 1104
BseYI CCCAGC 1 cut(s) 982
Bsh1236I CGCG 1 cut(s) 257
BshFI GGCC 2 cut(s) 643, 1257
BshVI ATCGAT 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 3 cut(s) 141, 479, 1015
BsmAI GTCTC 2 cut(s) 13, 1212
BsmBI CGTCTC 1 cut(s) 1212
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 2 cut(s) 643, 1257
Bso31I GGTCTC 1 cut(s) 13
BsoBI CYCGRG 1 cut(s) 941
Bsp1286I GDGCHC 3 cut(s) 235, 1038, 1146
Bsp143I GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 643, 1257
BspCNI CTCAG 3 cut(s) 215, 289, 580
BspDI ATCGAT 1 cut(s) 597
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 187
BspPI GGATC 3 cut(s) 332, 602, 1197
BspQI GCTCTTC 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 852
BssECI CCNNGG 1 cut(s) 975
BssMI GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
BssT1I CCWWGG 1 cut(s) 975
Bst2UI CCWGG 1 cut(s) 1290
Bst4CI ACNGT 1 cut(s) 1151
Bst6I CTCTTC 3 cut(s) 240, 381, 1074
BstDEI CTNAG 5 cut(s) 15, 202, 297, 567, 887
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 7 cut(s) 229, 327, 364, 532, 597, 788, 1205
BstMAI GTCTC 2 cut(s) 13, 1212
BstMBI GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
BstMWI GCNNNNNNNGC 1 cut(s) 733
BstNI CCWGG 1 cut(s) 1290
BstSCI CCNGG 1 cut(s) 1288
BstSLI GKGCMC 1 cut(s) 1146
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 892, 1104
BstV2I GAAGAC 1 cut(s) 659
BstX2I RGATCY 2 cut(s) 361, 785
BstXI CCANNNNNNTGG 2 cut(s) 284, 982
BstYI RGATCY 2 cut(s) 361, 785
Bsu15I ATCGAT 1 cut(s) 597
Bsu36I CCTNAGG 1 cut(s) 887
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 643, 1257
BsuTUI ATCGAT 1 cut(s) 597
BtrI CACGTC 1 cut(s) 1114
BtsCI GGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 52, 330, 859, 1341
CciI TCATGA 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 641
ClaI ATCGAT 1 cut(s) 597
Csp6I GTAC 2 cut(s) 120, 1240
CviAII CATG 5 cut(s) 188, 380, 433, 556, 1022
CviQI GTAC 2 cut(s) 120, 1240
DdeI CTNAG 5 cut(s) 15, 202, 297, 567, 887
DpnI GATC 7 cut(s) 228, 326, 363, 531, 596, 787, 1204
DpnII GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
EaeI YGGCCR 1 cut(s) 1255
Eam1104I CTCTTC 3 cut(s) 240, 381, 1074
EarI CTCTTC 3 cut(s) 240, 381, 1074
Eco130I CCWWGG 1 cut(s) 975
Eco24I GRGCYC 1 cut(s) 1038
Eco31I GGTCTC 1 cut(s) 13
Eco32I GATATC 2 cut(s) 605, 1214
Eco57I CTGAAG 3 cut(s) 54, 221, 950
Eco81I CCTNAGG 1 cut(s) 887
Eco88I CYCGRG 1 cut(s) 941
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 1288
EcoRV GATATC 2 cut(s) 605, 1214
EcoT14I CCWWGG 1 cut(s) 975
EcoT38I GRGCYC 1 cut(s) 1038
ErhI CCWWGG 1 cut(s) 975
Esp3I CGTCTC 1 cut(s) 1212
FaeI CATG 5 cut(s) 191, 383, 436, 559, 1025
FalI AAGNNNNNCTT 2 cut(s) 610, 642
FaqI GGGAC 1 cut(s) 991
FatI CATG 5 cut(s) 187, 379, 432, 555, 1021
FauNDI CATATG 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 906, 1118
FokI GGATG 1 cut(s) 71
FriOI GRGCYC 1 cut(s) 1038
Fsp4HI GCNGC 2 cut(s) 906, 1118
FspBI CTAG 4 cut(s) 359, 791, 1001, 1299
GluI GCNGC 2 cut(s) 906, 1118
GsaI CCCAGC 1 cut(s) 986
GsuI CTGGAG 1 cut(s) 1272
HaeIII GGCC 2 cut(s) 643, 1257
HapII CCGG 1 cut(s) 56
Hin1II CATG 5 cut(s) 191, 383, 436, 559, 1025
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 725
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 2 cut(s) 417, 1130
Hpy188I TCNGA 3 cut(s) 10, 240, 1060
Hpy8I GTNNAC 2 cut(s) 417, 1130
HpyAV CCTTC 2 cut(s) 925, 1219
HpyCH4III ACNGT 1 cut(s) 1151
HpyCH4IV ACGT 2 cut(s) 702, 1113
HpyCH4V TGCA 6 cut(s) 50, 62, 671, 1109, 1179, 1267
HpyF10VI GCNNNNNNNGC 1 cut(s) 733
HpyF3I CTNAG 5 cut(s) 15, 202, 297, 567, 887
HpySE526I ACGT 2 cut(s) 702, 1113
Hsp92II CATG 5 cut(s) 191, 383, 436, 559, 1025
Kzo9I GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 724
Lsp1109I GCAGC 2 cut(s) 892, 1104
LweI GCATC 1 cut(s) 49
MaeI CTAG 4 cut(s) 359, 791, 1001, 1299
MaeII ACGT 2 cut(s) 702, 1113
MaeIII GTNAC 5 cut(s) 71, 245, 485, 759, 1158
MalI GATC 7 cut(s) 228, 326, 363, 531, 596, 787, 1204
MboI GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
MboII GAAGA 7 cut(s) 47, 157, 227, 398, 664, 1091, 1324
MflI RGATCY 2 cut(s) 361, 785
MhlI GDGCHC 3 cut(s) 235, 1038, 1146
MlsI TGGCCA 1 cut(s) 1257
MluCI AATT 6 cut(s) 98, 266, 515, 647, 846, 1061
MluNI TGGCCA 1 cut(s) 1257
MlyI GAGTC 3 cut(s) 20, 1013, 1135
MmeI TCCRAC 2 cut(s) 115, 1103
MnlI CCTC 6 cut(s) 98, 208, 211, 292, 1175, 1295
Mox20I TGGCCA 1 cut(s) 1257
MscI TGGCCA 1 cut(s) 1257
MseI TTAA 9 cut(s) 461, 513, 536, 659, 714, 858, 957, 1236, 1247
MslI CAYNNNNRTG 2 cut(s) 282, 315
Msp20I TGGCCA 1 cut(s) 1257
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 1290
MvaI CCWGG 1 cut(s) 1290
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 733
NdeI CATATG 1 cut(s) 152
NdeII GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
NlaIII CATG 5 cut(s) 191, 383, 436, 559, 1025
NmuCI GTSAC 3 cut(s) 71, 759, 1158
PaeR7I CTCGAG 1 cut(s) 941
PagI TCATGA 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 240
PfeI GAWTC 7 cut(s) 5, 42, 241, 259, 612, 1055, 1188
PflMI CCANNNNNTGG 1 cut(s) 141
PkrI GCNGC 2 cut(s) 907, 1119
PleI GAGTC 3 cut(s) 19, 1012, 1134
PpsI GAGTC 3 cut(s) 19, 1012, 1134
PshBI ATTAAT 1 cut(s) 714
Psp6I CCWGG 1 cut(s) 1288
PspFI CCCAGC 1 cut(s) 982
PspGI CCWGG 1 cut(s) 1288
PspPI GGNCC 1 cut(s) 641
PsuI RGATCY 2 cut(s) 361, 785
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 2 cut(s) 121, 1241
RsaNI GTAC 2 cut(s) 120, 1240
RseI CAYNNNNRTG 2 cut(s) 282, 315
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 9 cut(s) 461, 513, 536, 659, 714, 858, 957, 1236, 1247
SatI GCNGC 2 cut(s) 906, 1118
Sau3AI GATC 7 cut(s) 226, 324, 361, 529, 594, 785, 1202
Sau96I GGNCC 1 cut(s) 641
ScaI AGTACT 1 cut(s) 1241
SchI GAGTC 3 cut(s) 20, 1013, 1135
ScrFI CCNGG 1 cut(s) 1290
SduI GDGCHC 3 cut(s) 235, 1038, 1146
SfaNI GCATC 1 cut(s) 49
Sfr274I CTCGAG 1 cut(s) 941
SlaI CTCGAG 1 cut(s) 941
SmiMI CAYNNNNRTG 2 cut(s) 282, 315
SmlI CTYRAG 2 cut(s) 941, 1166
SmoI CTYRAG 2 cut(s) 941, 1166
Sse9I AATT 6 cut(s) 98, 266, 515, 647, 846, 1061
SsiI CCGC 1 cut(s) 255
SspMI CTAG 4 cut(s) 359, 791, 1001, 1299
StyD4I CCNGG 1 cut(s) 1288
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 1 cut(s) 1151
TaiI ACGT 2 cut(s) 705, 1116
TaqI TCGA 6 cut(s) 180, 282, 597, 795, 942, 1216
TasI AATT 6 cut(s) 98, 266, 515, 647, 846, 1061
TatI WGTACW 1 cut(s) 1239
TfiI GAWTC 7 cut(s) 5, 42, 241, 259, 612, 1055, 1188
Tru1I TTAA 9 cut(s) 461, 513, 536, 659, 714, 858, 957, 1236, 1247
Tru9I TTAA 9 cut(s) 461, 513, 536, 659, 714, 858, 957, 1236, 1247
TscAI CASTG 4 cut(s) 52, 337, 859, 1341
TseFI GTSAC 3 cut(s) 71, 759, 1158
TseI GCWGC 2 cut(s) 905, 1117
Tsp45I GTSAC 3 cut(s) 71, 759, 1158
TspDTI ATGAA 4 cut(s) 202, 544, 619, 864
TspRI CASTG 4 cut(s) 52, 337, 859, 1341
Van91I CCANNNNNTGG 1 cut(s) 141
VspI ATTAAT 1 cut(s) 714
XagI CCTNNNNNAGG 1 cut(s) 477
XapI RAATTY 4 cut(s) 98, 266, 515, 846
XbaI TCTAGA 2 cut(s) 1000, 1298
XhoI CTCGAG 1 cut(s) 941
XspI CTAG 4 cut(s) 359, 791, 1001, 1299
ZrmI AGTACT 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.