Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001368

Physical Location & Seq

Genomic Coordinates Reverse (-)

17082599 .. 17086795

Gene Structure 4197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24030.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATGGAGATGATCTCCAGAGGTGACTTGAAACAGGTGCTCTGTGCTTGTGCTGAAGCATTGGCAGAAAATGATATGTCAACAACTGAATGGTTGATGTCAAATTTACGTCAGATGGTATCAGTTTCAGGTGAGCCAGTCCAACGTTTAGGAGCTTACATGTTGGAAGGCCTTGTTGCAAGGTTGGCCTCTACAGGAAGTTGCATCTATGCATCCTTAAGATGCAAAGAGCCTGCCAGTGCCGAACTCCTATCATACATGCACATACTATATGAAATCTGCCCTTACTTCAAGTTTGGGTACATGTCAGCCAATGGGGCGATTGCAGAAGCCATGAAGGATGAAAGTAGAGTTCATATAATTGATTTTCAGATTGCTCAAGGCAGCCAGTGGATCACCTTGATCCAGGCCTTAGCTAGTCGGCCTGGAGGGCCCCCACATATTAGACTCACGGGCATAGATGATTCTACATCAGCTTATGCACGGGGAGGGGGACTTGATCTTGTGGGAAAGAGGTTGTCAAGGCTTGCAGAGTCATATAAGGTACCGTTTGAGTTCCATGGTGCTGGAATCTCTGCTTCTGAGGTTCAGCTTGAGGACCTTGCAGTTCAAACAGGTGAGGCACTTGCAGTTAATTTTGCCTTCACGCTGCACCACATGCCAGATGAGAGTGTGAGCATCGAAAATCATAGGGACCGGCTGTTGAGGGTGGTTAAGAGCTTGTCTCCCATGGTGGTGACTCTTGTTGAGCAAGAATCAAACACCAACACAGCTCCTTTCTGTCCCCGATTTGCTGAGGCATTTAGCTACTATGGGGCTATTTTTGATTCAATCGATGCAGCTTTGCCAAGGGAACACAAAGAGCGGATCAATGTTGAGCAGCACTGTCTGGCACGAGAAATTGTCAACATTATAGCTTGTGAAGGGGTCGAAAGAGTAGAACGTACCGAACTTCTCAGTAAGTGGAGGTCACGATTTATGATGGCAGGGTTTTCACCTTATCCACTTAGCTCCATAATAAATGCCACAATCAAAACCCTGCTGCAGAGCTATTCTGAGAAGTATACACTTGAAGAAAGAGATGGAGCCTTATATCTCGGGTGGAAGAATCAAGCTCTTGTTGCCTCCTGTGCATGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

381

Amino Acids

42.26

Weight (kDa)

5.58

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	154 - 524	2.2e-141	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04890 AT5G48150 AT5G48150 AT5G48150 AT5G48150
fragaria_vesca	FvH4_3g24030 FvH4_3g24030 FvH4_3g24030 FvH4_3g24030 FvH4_3g24030 FvH4_3g24030 FvH4_3g24030 FvH4_6g41200
malus_domestica	MD03G1188800.v1.1 MD09G1121700.v1.1 MD11G1204900.v1.1 MD17G1112700.v1.1
prunus_persica	Prupe.3G201900_v2.0.a1 Prupe.3G201900_v2.0.a1 Prupe.3G201900_v2.0.a1 Prupe.3G201900_v2.0.a1 Prupe.3G201900_v2.0.a1 Prupe.4G233000_v2.0.a1 Prupe.4G233000_v2.0.a1 Prupe.4G233000_v2.0.a1 Prupe.4G233000_v2.0.a1 Prupe.4G233000_v2.0.a1 Prupe.4G233000_v2.0.a1 Prupe.4G233000_v2.0.a1
pyrus_communis	pycom09g04610 pycom11g17760 pycom17g10440
rosa_chinensis	RchiOBHm_Chr2g0156761 RchiOBHm_Chr5g0042621
rosa_laevigata	RLG00000020939 RLG00000034144
rosa_multiflora	Rmu_co8517349.1_g000001 Rmu_sc0008149.1_g000012
rosa_roxburghii	Rroxscaffold_1G00038020 Rroxscaffold_2G00092750
rosa_rugosa	Rorug02G0456100 Rorug05G0203300 Rorug05G0203300
rosa_samantha	Rh2AG521600 Rh2BG534900 Rh2CG506500 Rh2DG543900 Rh5AG288400 Rh5BG292500 Rh5CG325000 Rh5DG302400
rosa_wichuraiana	Rw2G043050 Rw5G026760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	544
AccB1I	GGYRCC	1 cut(s)	544
AccBSI	CCGCTC	1 cut(s)	865
AccI	GTMKAC	1 cut(s)	1064
AciI	CCGC	1 cut(s)	865
AclI	AACGTT	1 cut(s)	145
AclWI	GGATC	3 cut(s)	397, 401, 875
AcsI	RAATTY	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	3 cut(s)	302, 546, 946
AfiI	CCNNNNNNNGG	1 cut(s)	1134
AflII	CTTAAG	1 cut(s)	217
AflIII	ACRYGT	2 cut(s)	159, 303
AgsI	TTSAA	5 cut(s)	31, 292, 611, 831, 1073
AjnI	CCWGG	2 cut(s)	405, 424
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	3 cut(s)	397, 401, 875
Ama87I	CYCGRG	1 cut(s)	1097
AoxI	GGCC	5 cut(s)	169, 186, 408, 422, 431
ApaI	GGGCCC	1 cut(s)	435
ApeKI	GCWGC	5 cut(s)	384, 649, 839, 880, 1042
ApoI	RAATTY	1 cut(s)	103
Asp718I	GGTACC	1 cut(s)	544
AspS9I	GGNCC	4 cut(s)	431, 432, 598, 694
AsuHPI	GGTGA	6 cut(s)	35, 143, 388, 629, 748, 987
AvaI	CYCGRG	1 cut(s)	1097
AvaII	GGWCC	2 cut(s)	598, 694
BaeGI	GKGCMC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	435
BauI	CACGAG	1 cut(s)	894
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	795
BbvI	GCAGC	5 cut(s)	396, 636, 851, 892, 1029
BccI	CCATC	3 cut(s)	109, 976, 1076
BciT130I	CCWGG	2 cut(s)	407, 426
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	2 cut(s)	192, 1043
BfrI	CTTAAG	1 cut(s)	217
BglI	GCCNNNNNGGC	2 cut(s)	317, 430
BisI	GCNGC	5 cut(s)	385, 650, 840, 881, 1043
BlsI	GCNGC	5 cut(s)	386, 651, 841, 882, 1044
Bme1390I	CCNGG	2 cut(s)	407, 426
Bme18I	GGWCC	2 cut(s)	598, 694
BmeT110I	CYCGRG	1 cut(s)	1097
BmgT120I	GGNCC	4 cut(s)	431, 432, 598, 694
BmiI	GGNNCC	5 cut(s)	433, 434, 546, 695, 1087
BmrFI	CCNGG	2 cut(s)	407, 426
BmsI	GCATC	5 cut(s)	212, 213, 221, 687, 826
BplI	GAGNNNNNCTC	3 cut(s)	31, 709, 741
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	2 cut(s)	412, 795
BpuEI	CTTGAG	2 cut(s)	363, 614
Bsa29I	ATCGAT	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	559, 729, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	1134
Bse118I	RCCGGY	1 cut(s)	696
Bse1I	ACTGG	3 cut(s)	137, 237, 388
BseBI	CCWGG	2 cut(s)	407, 426
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	3 cut(s)	559, 729, 848
BseGI	GGATG	2 cut(s)	212, 346
BseLI	CCNNNNNNNGG	1 cut(s)	1134
BseMII	CTCAG	4 cut(s)	573, 786, 970, 1047
BseNI	ACTGG	3 cut(s)	137, 237, 388
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	5 cut(s)	396, 636, 851, 892, 1029
BsgI	GTGCAG	1 cut(s)	635
BshFI	GGCC	5 cut(s)	171, 188, 410, 424, 433
BshNI	GGYRCC	1 cut(s)	544
BshVI	ATCGAT	1 cut(s)	834
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	1 cut(s)	1097
BsiSI	CCGG	1 cut(s)	697
BslFI	GGGAC	3 cut(s)	507, 707, 768
BslI	CCNNNNNNNGG	1 cut(s)	1134
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	3 cut(s)	507, 707, 768
BsnI	GGCC	5 cut(s)	171, 188, 410, 424, 433
BsoBI	CYCGRG	1 cut(s)	1097
Bsp120I	GGGCCC	1 cut(s)	431
Bsp1286I	GDGCHC	2 cut(s)	42, 435
Bsp143I	GATC	5 cut(s)	12, 393, 402, 499, 867
Bsp19I	CCATGG	2 cut(s)	559, 729
BspACI	CCGC	1 cut(s)	865
BspANI	GGCC	5 cut(s)	171, 188, 410, 424, 433
BspCNI	CTCAG	4 cut(s)	574, 787, 969, 1048
BspDI	ATCGAT	1 cut(s)	834
BspLI	GGNNCC	5 cut(s)	433, 434, 546, 695, 1087
BspMAI	CTGCAG	1 cut(s)	1047
BspPI	GGATC	3 cut(s)	397, 401, 875
BspT107I	GGYRCC	1 cut(s)	544
BspTI	CTTAAG	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	865
BsrFI	RCCGGY	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	137, 237, 388
BssAI	RCCGGY	1 cut(s)	696
BssECI	CCNNGG	3 cut(s)	559, 729, 848
BssMI	GATC	5 cut(s)	12, 393, 402, 499, 867
BssNAI	GTATAC	1 cut(s)	1065
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	3 cut(s)	559, 729, 848
Bst1107I	GTATAC	1 cut(s)	1065
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	2 cut(s)	407, 426
Bst4CI	ACNGT	2 cut(s)	549, 887
BstAFI	CTTAAG	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstC8I	GCNNGC	2 cut(s)	234, 528
BstDEI	CTNAG	6 cut(s)	412, 582, 795, 956, 1007, 1056
BstDSI	CCRYGG	2 cut(s)	559, 729
BstF5I	GGATG	2 cut(s)	212, 346
BstKTI	GATC	5 cut(s)	15, 396, 405, 502, 870
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	5 cut(s)	12, 393, 402, 499, 867
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 317, 430, 658, 1121, 1130
BstNI	CCWGG	2 cut(s)	407, 426
BstNSI	RCATGY	4 cut(s)	163, 262, 307, 661
BstSCI	CCNGG	2 cut(s)	405, 424
BstSFI	CTRYAG	2 cut(s)	192, 1043
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	5 cut(s)	396, 636, 851, 892, 1029
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstZ17I	GTATAC	1 cut(s)	1065
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	5 cut(s)	171, 188, 410, 424, 433
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	2 cut(s)	559, 729
BtsCI	GGATG	2 cut(s)	212, 346
BtsIMutI	CAGTG	3 cut(s)	244, 395, 883
Cac8I	GCNNGC	2 cut(s)	234, 528
Cfr10I	RCCGGY	1 cut(s)	696
Cfr13I	GGNCC	4 cut(s)	431, 432, 598, 694
ClaI	ATCGAT	1 cut(s)	834
Csp6I	GTAC	3 cut(s)	301, 545, 945
CviAII	CATG	8 cut(s)	160, 259, 304, 334, 560, 658, 730, 1134
CviQI	GTAC	3 cut(s)	301, 545, 945
DdeI	CTNAG	6 cut(s)	412, 582, 795, 956, 1007, 1056
DpnI	GATC	5 cut(s)	14, 395, 404, 501, 869
DpnII	GATC	5 cut(s)	12, 393, 402, 499, 867
Eco130I	CCWWGG	3 cut(s)	559, 729, 848
Eco147I	AGGCCT	2 cut(s)	171, 410
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	598, 694
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	1097
EcoO109I	RGGNCCY	3 cut(s)	431, 432, 598
EcoRII	CCWGG	2 cut(s)	405, 424
EcoT14I	CCWWGG	3 cut(s)	559, 729, 848
EcoT22I	ATGCAT	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	3 cut(s)	559, 729, 848
FaeI	CATG	8 cut(s)	163, 262, 307, 337, 563, 661, 733, 1137
FaqI	GGGAC	3 cut(s)	507, 707, 768
FatI	CATG	8 cut(s)	159, 258, 303, 333, 559, 657, 729, 1133
FblI	GTMKAC	1 cut(s)	1064
Fnu4HI	GCNGC	5 cut(s)	385, 650, 840, 881, 1043
FokI	GGATG	2 cut(s)	199, 353
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	5 cut(s)	385, 650, 840, 881, 1043
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	5 cut(s)	385, 650, 840, 881, 1043
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	5 cut(s)	171, 188, 410, 424, 433
HapII	CCGG	1 cut(s)	697
Hin1II	CATG	8 cut(s)	163, 262, 307, 337, 563, 661, 733, 1137
HincII	GTYRAC	2 cut(s)	81, 907
HindII	GTYRAC	2 cut(s)	81, 907
HinfI	GANTC	8 cut(s)	447, 464, 533, 570, 739, 755, 827, 1108
HpaII	CCGG	1 cut(s)	697
HphI	GGTGA	6 cut(s)	35, 143, 388, 629, 748, 987
Hpy166II	GTNNAC	3 cut(s)	81, 907, 1065
Hpy188I	TCNGA	4 cut(s)	114, 372, 583, 1057
Hpy188III	TCNNGA	2 cut(s)	18, 972
Hpy8I	GTNNAC	3 cut(s)	81, 907, 1065
HpyAV	CCTTC	4 cut(s)	161, 331, 652, 917
HpyCH4III	ACNGT	2 cut(s)	549, 887
HpyCH4IV	ACGT	3 cut(s)	109, 145, 943
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 317, 430, 658, 1121, 1130
HpyF3I	CTNAG	6 cut(s)	412, 582, 795, 956, 1007, 1056
HpySE526I	ACGT	3 cut(s)	109, 145, 943
Hsp92II	CATG	8 cut(s)	163, 262, 307, 337, 563, 661, 733, 1137
KpnI	GGTACC	1 cut(s)	548
Kzo9I	GATC	5 cut(s)	12, 393, 402, 499, 867
LmnI	GCTCC	4 cut(s)	152, 778, 1016, 1085
Lsp1109I	GCAGC	5 cut(s)	396, 636, 851, 892, 1029
LweI	GCATC	5 cut(s)	212, 213, 221, 687, 826
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	3 cut(s)	109, 145, 943
MaeIII	GTNAC	3 cut(s)	23, 736, 969
MalI	GATC	5 cut(s)	14, 395, 404, 501, 869
MbiI	CCGCTC	1 cut(s)	865
MboI	GATC	5 cut(s)	12, 393, 402, 499, 867
MboII	GAAGA	2 cut(s)	1085, 1117
MhlI	GDGCHC	2 cut(s)	42, 435
MluCI	AATT	4 cut(s)	103, 360, 634, 900
MlyI	GAGTC	3 cut(s)	441, 542, 733
MmeI	TCCRAC	2 cut(s)	144, 166
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	3 cut(s)	218, 633, 714
MslI	CAYNNNNRTG	1 cut(s)	734
MspCI	CTTAAG	1 cut(s)	217
MspI	CCGG	1 cut(s)	697
MspR9I	CCNGG	2 cut(s)	407, 426
MvaI	CCWGG	2 cut(s)	407, 426
MwoI	GCNNNNNNNGC	6 cut(s)	185, 317, 430, 658, 1121, 1130
NcoI	CCATGG	2 cut(s)	559, 729
NdeII	GATC	5 cut(s)	12, 393, 402, 499, 867
NlaIII	CATG	8 cut(s)	163, 262, 307, 337, 563, 661, 733, 1137
NlaIV	GGNNCC	5 cut(s)	433, 434, 546, 695, 1087
NmuCI	GTSAC	3 cut(s)	23, 736, 969
NsiI	ATGCAT	1 cut(s)	214
NspI	RCATGY	4 cut(s)	163, 262, 307, 661
PceI	AGGCCT	2 cut(s)	171, 410
PciI	ACATGT	2 cut(s)	159, 303
PfeI	GAWTC	5 cut(s)	464, 570, 755, 827, 1108
PkrI	GCNGC	5 cut(s)	386, 651, 841, 882, 1044
PleI	GAGTC	3 cut(s)	441, 541, 733
PpsI	GAGTC	3 cut(s)	441, 541, 733
PpuMI	RGGWCCY	1 cut(s)	598
PscI	ACATGT	2 cut(s)	159, 303
Psp1406I	AACGTT	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	405, 424
PspGI	CCWGG	2 cut(s)	405, 424
PspN4I	GGNNCC	5 cut(s)	433, 434, 546, 695, 1087
PspOMI	GGGCCC	1 cut(s)	431
PspPI	GGNCC	4 cut(s)	431, 432, 598, 694
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	1047
RsaI	GTAC	3 cut(s)	302, 546, 946
RsaNI	GTAC	3 cut(s)	301, 545, 945
RseI	CAYNNNNRTG	1 cut(s)	734
SaqAI	TTAA	3 cut(s)	218, 633, 714
SatI	GCNGC	5 cut(s)	385, 650, 840, 881, 1043
Sau3AI	GATC	5 cut(s)	12, 393, 402, 499, 867
Sau96I	GGNCC	4 cut(s)	431, 432, 598, 694
SchI	GAGTC	3 cut(s)	441, 542, 733
ScrFI	CCNGG	2 cut(s)	407, 426
SduI	GDGCHC	2 cut(s)	42, 435
SfaNI	GCATC	5 cut(s)	212, 213, 221, 687, 826
SfcI	CTRYAG	2 cut(s)	192, 1043
SfiI	GGCCNNNNNGGCC	1 cut(s)	430
SinI	GGWCC	2 cut(s)	598, 694
SmiMI	CAYNNNNRTG	1 cut(s)	734
SmlI	CTYRAG	3 cut(s)	217, 378, 593
SmoI	CTYRAG	3 cut(s)	217, 378, 593
Sse9I	AATT	4 cut(s)	103, 360, 634, 900
SseBI	AGGCCT	2 cut(s)	171, 410
SsiI	CCGC	1 cut(s)	865
SspMI	CTAG	1 cut(s)	417
StuI	AGGCCT	2 cut(s)	171, 410
StyD4I	CCNGG	2 cut(s)	405, 424
StyI	CCWWGG	3 cut(s)	559, 729, 848
TaaI	ACNGT	2 cut(s)	549, 887
TaiI	ACGT	3 cut(s)	112, 148, 946
TaqI	TCGA	3 cut(s)	681, 834, 930
TasI	AATT	4 cut(s)	103, 360, 634, 900
TfiI	GAWTC	5 cut(s)	464, 570, 755, 827, 1108
Tru1I	TTAA	3 cut(s)	218, 633, 714
Tru9I	TTAA	3 cut(s)	218, 633, 714
TscAI	CASTG	3 cut(s)	244, 395, 890
TseFI	GTSAC	3 cut(s)	23, 736, 969
TseI	GCWGC	5 cut(s)	384, 649, 839, 880, 1042
Tsp45I	GTSAC	3 cut(s)	23, 736, 969
TspDTI	ATGAA	4 cut(s)	288, 344, 350, 357
TspRI	CASTG	3 cut(s)	244, 395, 890
Vha464I	CTTAAG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	598, 694
XapI	RAATTY	1 cut(s)	103
XceI	RCATGY	4 cut(s)	163, 262, 307, 661
XmiI	GTMKAC	1 cut(s)	1064
XspI	CTAG	1 cut(s)	417
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.