Prupe.4G233000_v2.0.a1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
14976362 .. 14979513
3152 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G233000.1

Sequence Viewer

Length: 1713 bp
ATGAACTCAGAAGAAGCAAAGGAGAAGACGAAAGCTGAAGGCTGCAATAATCATATACCATTCATATGTCAAAAACCCAACTGGGTTTTCACCAAATTCCTTGAATCACAGAAACATATAATCCCAAATGTTTCTCACGGATGTGGAGAACAGCCTGTGGAAGAACCAGAGTCCTACTCTTGGCCTCCTATCCCCAGTGTTGACCACCAAGCATCCTCTGATGAGGTTATACAAGGAACACAGCTTTCAGTTCAACACTTGGCGCAGTACTGCACCCATGAATCTTCGTCAGGAACCAGTACTTACCACCCTGTTCACAGTTCTCCATCTAGTATAGGTTTCTCAGCAAATGGAAGTCCAACATCACATCCAGATTTGCAGAACTACCAGTCTTGTGGCTCCCCTGTCAACCAGTCGTGCTTATCAAATGATACGGATGACTTGGGGCACAAAATGAGGGAACTGGAAAGTGTTTTGCTGGGAAATGATTTAGATGCCTTTGATATGTATGCCATCACAGATGAGCTTGGGCCTAACCAGCTTTCATCAGAAGCAGAGAACTGGGAACAAATGATGGAGATGATCTCCAGAGGTGACTTGAAAGAGGTCCTTTGCGCTTGTGCGAAGGCATTGGCAAATAGTGATATGTCAACAACTGAATTGTTGATGTCAAACTTACGTCAGATGGTGTCAGTTTCAGGTGAGCCAATCCAACGATTAGGAGCTTACATGTTGGAAGGTCTTGTTGCAAGGTTGGCTTCTTCAGGAAGTGCTATCTATGCAGCCCTAAGATGCAAAGAGCCTGCCAGTGCGGAACTCCTCTCATACATGCACATACTTTATGAAATCTGCCCATACTTCAAGTTTGGGTATATGTCAGCCAATGGAGCGATTGCAGAAGCTATGAAGGATGAAAGTAGAGTTCATATAATTGATTTTCAGGTAGCTCAAGGCAGCCAGTGGATTACTTTAATCCAGGCTTTAGCTGCTCGGCCTGGAGGACCCCCACAGATTAGGATCACGGGCATTGATGATTCCACATCAGCTTATGCACGGGGAGGGGGACTTGGTCTTGTGGGACAGAGGTTGTCAAGGCTTGCAGAGTCATGTAAGGTACCCTTTGAGTTCCATGCAGCTGGAATTTCTGCTTCTGAGGTTCAGCTTGAGAACATTGAGGTTCGACCAGGAGAGGCAATTGCAGTGAATTTTGCCTTCATGCTGCACCACATGCCAGATGAGAGTGTGAGTTGTCAAAATCATAGGGACCGGCTGTTGAGGCTGGTTAAGAGCTTGTCTCCCAAGGTGGTGACTCTTGTTGAGCAAGAATCGAACACCAATACAGCCCCTTTCCTTCCCCGTTTTGCTGAAACATTGAGCTATTTCAGGGCTGTCTTTGATTCAATTGATGTGGCTCTACCAAGGGAGCATAAGGAGCGGATCAATGTTGAGCAGCATTGTCTGGCACGAGAAATTGTTAACATTATAGCTTGTGAAGGGATGGAAAGGGTAGAACGTTACGAGCTTCTCAGTAAGTGGAAGTCAAGATTTATTATGGCTGGCTTTTCACCCTATCCACTTAGCTCCTTAGTAAATGGCACTATCAAGACTCTACTGCAGAGTTATTCTGAAAAGTATACGCTTGAAGAGAGAGATGGAGCTTTATATCTTGGTTGGATGAATCGAGTACTGGTTGCCTCTTGTGCATGGAGGTAA

Protein Analysis

571

Amino Acids

63.14

Weight (kDa)

5.3

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1114
AccB1I GGYRCC 1 cut(s) 1114
AccBSI CCGCTC 1 cut(s) 1435
AccI GTMKAC 1 cut(s) 1634
AciI CCGC 2 cut(s) 812, 1435
AclI AACGTT 1 cut(s) 1513
AclWI GGATC 2 cut(s) 1025, 1445
AcsI RAATTY 3 cut(s) 95, 1140, 1204
AcuI CTGAAG 2 cut(s) 57, 747
AfaI GTAC 4 cut(s) 269, 301, 1116, 1686
AfiI CCNNNNNNNGG 1 cut(s) 180
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 6 cut(s) 104, 254, 601, 862, 1401, 1643
AjnI CCWGG 3 cut(s) 975, 994, 1183
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AleI CACNNNNGTG 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 1299
AlwI GGATC 2 cut(s) 1025, 1445
AoxI GGCC 3 cut(s) 182, 530, 992
ApeKI GCWGC 7 cut(s) 42, 782, 954, 986, 1133, 1219, 1450
ApoI RAATTY 3 cut(s) 95, 1140, 1204
Asp718I GGTACC 1 cut(s) 1114
AspLEI GCGC 2 cut(s) 265, 617
AspS9I GGNCC 4 cut(s) 530, 607, 1001, 1264
AsuHPI GGTGA 5 cut(s) 82, 605, 713, 1318, 1557
AvaII GGWCC 3 cut(s) 607, 1001, 1264
BaeGI GKGCMC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 1114
BauI CACGAG 1 cut(s) 1464
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 7 cut(s) 29, 794, 966, 973, 1145, 1206, 1462
BccI CCATC 6 cut(s) 334, 521, 568, 679, 1492, 1646
BciT130I CCWGG 3 cut(s) 977, 996, 1185
BcoDI GTCTC 1 cut(s) 1299
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 1613
BisI GCNGC 7 cut(s) 43, 783, 955, 987, 1134, 1220, 1451
BlsI GCNGC 7 cut(s) 44, 784, 956, 988, 1135, 1221, 1452
BmcAI AGTACT 3 cut(s) 269, 301, 1686
Bme1390I CCNGG 3 cut(s) 977, 996, 1185
Bme18I GGWCC 3 cut(s) 607, 1001, 1264
BmgT120I GGNCC 4 cut(s) 530, 607, 1001, 1264
BmiI GGNNCC 5 cut(s) 295, 400, 1003, 1116, 1265
BmrFI CCNGG 3 cut(s) 977, 996, 1185
BmrI ACTGGG 3 cut(s) 91, 189, 571
BmsI GCATC 3 cut(s) 221, 484, 782
BmuI ACTGGG 3 cut(s) 91, 189, 571
BpiI GAAGAC 1 cut(s) 32
BplI GAGNNNNNCTC 6 cut(s) 161, 193, 569, 601, 1279, 1311
BpmI CTGGAG 2 cut(s) 571, 1017
BpuEI CTTGAG 2 cut(s) 933, 1184
BsaBI GATNNNNATC 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 1299, 1418
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 1266
Bse8I GATNNNNATC 1 cut(s) 1016
BseBI CCWGG 3 cut(s) 977, 996, 1185
BseDI CCNNGG 2 cut(s) 1299, 1418
BseGI GGATG 7 cut(s) 146, 212, 367, 442, 916, 1503, 1680
BseJI GATNNNNATC 1 cut(s) 1016
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 4 cut(s) 21, 357, 1143, 1540
BseRI GAGGAG 1 cut(s) 809
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 7 cut(s) 29, 794, 966, 973, 1145, 1206, 1462
BseYI CCCAGC 1 cut(s) 478
BsgI GTGCAG 2 cut(s) 256, 1205
BshFI GGCC 3 cut(s) 184, 532, 994
BshNI GGYRCC 1 cut(s) 1114
BsiSI CCGG 1 cut(s) 1267
BslFI GGGAC 3 cut(s) 1077, 1092, 1277
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 1299
BsmFI GGGAC 3 cut(s) 1077, 1092, 1277
BsnI GGCC 3 cut(s) 184, 532, 994
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 3 cut(s) 582, 1017, 1437
BspACI CCGC 2 cut(s) 812, 1435
BspANI GGCC 3 cut(s) 184, 532, 994
BspCNI CTCAG 4 cut(s) 20, 356, 1144, 1539
BspLI GGNNCC 5 cut(s) 295, 400, 1003, 1116, 1265
BspMAI CTGCAG 1 cut(s) 1617
BspPI GGATC 2 cut(s) 1025, 1445
BspT107I GGYRCC 1 cut(s) 1114
BsrBI CCGCTC 1 cut(s) 1435
BsrFI RCCGGY 1 cut(s) 1266
BssAI RCCGGY 1 cut(s) 1266
BssECI CCNNGG 2 cut(s) 1299, 1418
BssMI GATC 3 cut(s) 582, 1017, 1437
BssNAI GTATAC 1 cut(s) 1635
BssSI CACGAG 1 cut(s) 1464
BssT1I CCWWGG 2 cut(s) 1299, 1418
Bst1107I GTATAC 1 cut(s) 1635
Bst2BI CACGAG 1 cut(s) 1464
Bst2UI CCWGG 3 cut(s) 977, 996, 1185
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 1638
BstAPI GCANNNNNTGC 1 cut(s) 1228
BstC8I GCNNGC 3 cut(s) 804, 1098, 1558
BstDEI CTNAG 7 cut(s) 7, 343, 788, 1152, 1526, 1577, 1585
BstF5I GGATG 7 cut(s) 146, 212, 367, 442, 916, 1503, 1680
BstHHI GCGC 2 cut(s) 265, 617
BstKTI GATC 3 cut(s) 585, 1020, 1440
BstMAI GTCTC 1 cut(s) 1299
BstMBI GATC 3 cut(s) 582, 1017, 1437
BstMWI GCNNNNNNNGC 9 cut(s) 538, 755, 779, 887, 986, 1228, 1276, 1432, 1700
BstNI CCWGG 3 cut(s) 977, 996, 1185
BstNSI RCATGY 3 cut(s) 733, 832, 1231
BstSCI CCNGG 3 cut(s) 975, 994, 1183
BstSFI CTRYAG 1 cut(s) 1613
BstSLI GKGCMC 1 cut(s) 450
BstV1I GCAGC 7 cut(s) 29, 794, 966, 973, 1145, 1206, 1462
BstV2I GAAGAC 1 cut(s) 32
BstXI CCANNNNNNTGG 2 cut(s) 395, 1136
BstZ17I GTATAC 1 cut(s) 1635
BsuRI GGCC 3 cut(s) 184, 532, 994
BtsCI GGATG 7 cut(s) 146, 212, 367, 442, 916, 1503, 1680
BtsI GCAGTG 1 cut(s) 1206
BtsIMutI CAGTG 4 cut(s) 202, 814, 965, 1206
Cac8I GCNNGC 3 cut(s) 804, 1098, 1558
CfoI GCGC 2 cut(s) 265, 617
Cfr10I RCCGGY 1 cut(s) 1266
Cfr13I GGNCC 4 cut(s) 530, 607, 1001, 1264
Csp6I GTAC 4 cut(s) 268, 300, 1115, 1685
CspCI CAANNNNNGTGG 2 cut(s) 1389, 1424
CviAII CATG 8 cut(s) 278, 730, 829, 1107, 1130, 1216, 1228, 1704
CviQI GTAC 4 cut(s) 268, 300, 1115, 1685
DdeI CTNAG 7 cut(s) 7, 343, 788, 1152, 1526, 1577, 1585
DpnI GATC 3 cut(s) 584, 1019, 1439
DpnII GATC 3 cut(s) 582, 1017, 1437
Eam1104I CTCTTC 1 cut(s) 1638
EarI CTCTTC 1 cut(s) 1638
Eco130I CCWWGG 2 cut(s) 1299, 1418
Eco47I GGWCC 3 cut(s) 607, 1001, 1264
Eco57I CTGAAG 2 cut(s) 57, 747
EcoO109I RGGNCCY 2 cut(s) 607, 1001
EcoRII CCWGG 3 cut(s) 975, 994, 1183
EcoT14I CCWWGG 2 cut(s) 1299, 1418
ErhI CCWWGG 2 cut(s) 1299, 1418
FaeI CATG 8 cut(s) 281, 733, 832, 1110, 1133, 1219, 1231, 1707
FalI AAGNNNNNCTT 6 cut(s) 594, 626, 742, 774, 1103, 1135
FaqI GGGAC 3 cut(s) 1077, 1092, 1277
FatI CATG 8 cut(s) 277, 729, 828, 1106, 1129, 1215, 1227, 1703
FauNDI CATATG 1 cut(s) 65
FblI GTMKAC 1 cut(s) 1634
Fnu4HI GCNGC 7 cut(s) 43, 783, 955, 987, 1134, 1220, 1451
FokI GGATG 7 cut(s) 153, 199, 354, 449, 923, 1510, 1687
Fsp4HI GCNGC 7 cut(s) 43, 783, 955, 987, 1134, 1220, 1451
FspBI CTAG 1 cut(s) 330
GlaI GCGC 2 cut(s) 264, 616
GluI GCNGC 7 cut(s) 43, 783, 955, 987, 1134, 1220, 1451
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 571, 1017
HaeIII GGCC 3 cut(s) 184, 532, 994
HapII CCGG 1 cut(s) 1267
HhaI GCGC 2 cut(s) 265, 617
Hin1II CATG 8 cut(s) 281, 733, 832, 1110, 1133, 1219, 1231, 1707
Hin6I GCGC 2 cut(s) 263, 615
HinP1I GCGC 2 cut(s) 263, 615
HincII GTYRAC 4 cut(s) 202, 409, 651, 1477
HindII GTYRAC 4 cut(s) 202, 409, 651, 1477
HpaI GTTAAC 1 cut(s) 1477
HpaII CCGG 1 cut(s) 1267
HphI GGTGA 5 cut(s) 82, 605, 713, 1318, 1557
Hpy166II GTNNAC 6 cut(s) 202, 316, 409, 651, 1477, 1635
Hpy188I TCNGA 6 cut(s) 10, 220, 550, 684, 1153, 1627
Hpy188III TCNNGA 6 cut(s) 291, 371, 588, 765, 1542, 1603
Hpy8I GTNNAC 6 cut(s) 202, 316, 409, 651, 1477, 1635
HpyAV CCTTC 7 cut(s) 32, 619, 731, 901, 1222, 1361, 1487
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 2 cut(s) 679, 1513
HpyF10VI GCNNNNNNNGC 9 cut(s) 538, 755, 779, 887, 986, 1228, 1276, 1432, 1700
HpyF3I CTNAG 7 cut(s) 7, 343, 788, 1152, 1526, 1577, 1585
HpySE526I ACGT 2 cut(s) 679, 1513
Hsp92II CATG 8 cut(s) 281, 733, 832, 1110, 1133, 1219, 1231, 1707
HspAI GCGC 2 cut(s) 263, 615
KpnI GGTACC 1 cut(s) 1118
KspAI GTTAAC 1 cut(s) 1477
Kzo9I GATC 3 cut(s) 582, 1017, 1437
LmnI GCTCC 7 cut(s) 404, 722, 887, 1423, 1432, 1586, 1655
Lsp1109I GCAGC 7 cut(s) 29, 794, 966, 973, 1145, 1206, 1462
LweI GCATC 3 cut(s) 221, 484, 782
MaeI CTAG 1 cut(s) 330
MaeII ACGT 2 cut(s) 679, 1513
MaeIII GTNAC 3 cut(s) 593, 1306, 1514
MalI GATC 3 cut(s) 584, 1019, 1439
MbiI CCGCTC 1 cut(s) 1435
MboI GATC 3 cut(s) 582, 1017, 1437
MboII GAAGA 6 cut(s) 23, 37, 173, 276, 753, 1655
MfeI CAATTG 2 cut(s) 1194, 1401
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 8 cut(s) 95, 659, 930, 1140, 1194, 1204, 1401, 1470
MlyI GAGTC 4 cut(s) 179, 1112, 1303, 1600
MmeI TCCRAC 4 cut(s) 383, 714, 736, 1652
MseI TTAA 3 cut(s) 971, 1284, 1476
MslI CAYNNNNRTG 2 cut(s) 64, 141
MspA1I CMGCKG 1 cut(s) 1136
MspI CCGG 1 cut(s) 1267
MspR9I CCNGG 3 cut(s) 977, 996, 1185
MunI CAATTG 2 cut(s) 1194, 1401
MvaI CCWGG 3 cut(s) 977, 996, 1185
MwoI GCNNNNNNNGC 9 cut(s) 538, 755, 779, 887, 986, 1228, 1276, 1432, 1700
NdeI CATATG 1 cut(s) 65
NdeII GATC 3 cut(s) 582, 1017, 1437
NlaIII CATG 8 cut(s) 281, 733, 832, 1110, 1133, 1219, 1231, 1707
NlaIV GGNNCC 5 cut(s) 295, 400, 1003, 1116, 1265
NmeAIII GCCGAG 1 cut(s) 970
NmuCI GTSAC 2 cut(s) 593, 1306
NspI RCATGY 3 cut(s) 733, 832, 1231
OliI CACNNNNGTG 1 cut(s) 141
PciI ACATGT 1 cut(s) 729
PfeI GAWTC 6 cut(s) 104, 281, 1034, 1325, 1397, 1678
PflFI GACNNNGTC 1 cut(s) 1068
PkrI GCNGC 7 cut(s) 44, 784, 956, 988, 1135, 1221, 1452
PleI GAGTC 4 cut(s) 178, 1111, 1303, 1600
PpsI GAGTC 4 cut(s) 178, 1111, 1303, 1600
PpuMI RGGWCCY 2 cut(s) 607, 1001
PscI ACATGT 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 1513
Psp5II RGGWCCY 2 cut(s) 607, 1001
Psp6I CCWGG 3 cut(s) 975, 994, 1183
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 3 cut(s) 975, 994, 1183
PspN4I GGNNCC 5 cut(s) 295, 400, 1003, 1116, 1265
PspPI GGNCC 4 cut(s) 530, 607, 1001, 1264
PspPPI RGGWCCY 2 cut(s) 607, 1001
PstI CTGCAG 1 cut(s) 1617
PsyI GACNNNGTC 1 cut(s) 1068
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 4 cut(s) 269, 301, 1116, 1686
RsaNI GTAC 4 cut(s) 268, 300, 1115, 1685
RseI CAYNNNNRTG 2 cut(s) 64, 141
SaqAI TTAA 3 cut(s) 971, 1284, 1476
SatI GCNGC 7 cut(s) 43, 783, 955, 987, 1134, 1220, 1451
Sau3AI GATC 3 cut(s) 582, 1017, 1437
Sau96I GGNCC 4 cut(s) 530, 607, 1001, 1264
ScaI AGTACT 3 cut(s) 269, 301, 1686
SchI GAGTC 4 cut(s) 179, 1112, 1303, 1600
ScrFI CCNGG 3 cut(s) 977, 996, 1185
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 3 cut(s) 221, 484, 782
SfcI CTRYAG 1 cut(s) 1613
SinI GGWCC 3 cut(s) 607, 1001, 1264
SmiMI CAYNNNNRTG 2 cut(s) 64, 141
SmlI CTYRAG 2 cut(s) 948, 1163
SmoI CTYRAG 2 cut(s) 948, 1163
Sse9I AATT 8 cut(s) 95, 659, 930, 1140, 1194, 1204, 1401, 1470
SsiI CCGC 2 cut(s) 812, 1435
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 3 cut(s) 975, 994, 1183
StyI CCWWGG 2 cut(s) 1299, 1418
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 2 cut(s) 682, 1516
TaqI TCGA 3 cut(s) 1180, 1328, 1681
TasI AATT 8 cut(s) 95, 659, 930, 1140, 1194, 1204, 1401, 1470
TatI WGTACW 3 cut(s) 267, 299, 1684
TfiI GAWTC 6 cut(s) 104, 281, 1034, 1325, 1397, 1678
Tru1I TTAA 3 cut(s) 971, 1284, 1476
Tru9I TTAA 3 cut(s) 971, 1284, 1476
TscAI CASTG 4 cut(s) 202, 814, 965, 1206
TseFI GTSAC 2 cut(s) 593, 1306
TseI GCWGC 7 cut(s) 42, 782, 954, 986, 1133, 1219, 1450
Tsp45I GTSAC 2 cut(s) 593, 1306
TspGWI ACGGA 2 cut(s) 153, 449
TspRI CASTG 4 cut(s) 202, 814, 965, 1206
Tth111I GACNNNGTC 1 cut(s) 1068
VpaK11BI GGWCC 3 cut(s) 607, 1001, 1264
XapI RAATTY 3 cut(s) 95, 1140, 1204
XceI RCATGY 3 cut(s) 733, 832, 1231
XmiI GTMKAC 1 cut(s) 1634
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 3 cut(s) 269, 301, 1686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.