pycom17g10440

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
8028329 .. 8031790
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g10440.2

Sequence Viewer

Length: 1572 bp
ATGGAGGTTGTTGCAGTGAGGGGTTATACAACTTGCAGACAAATAAATTCCACTGGTAGTAATGTGGGTTCTCTTCTTCTTCTTCTTCTCTCTCTCACCGAGTCACTCCCACTGTCAGAAAAAGACTGGTCTGGGGTGGAATTCCAAGCTTCAAATTCATTCAAACAAGATAATGCTTCTGGCAAGCGAATTCGAAGGCTCCTTTACAGCTCTGACGAAGTTTGGATAACACATATAGAAGGACACTTTTTGGCAACAGAGTCAACAATCAGACTACTCTTCAATGCAAGCATCGAAGCAGCAGAGAAGTTCAGGGATGTCAAACCGGTTGCATTATCAGCCAATCCAAGAAGTAGAAGCCTACTGCTTGCCTCGGTTCCAAACTTTGAACCCCCAGCTACACTACAACGAGAGCTGCCAAAGTACCCACCTCCCAATGCAGACTTCTCACCTAGTGGAAGCCCAATGTCACAGCAAGACTCTCATTCATATCCGTCTGAGCGGTTTCATTCCCCTGACCAGACCTACAGCCCTCCGATAAGTGGATCCTGCATAACTGATGATGCACCTGACTTCAAGTACAAGCTGAAACAATTAGAAACTGTAATGCTGGGTCCTGATTCCAATATTCTTGATAACTATTGCATTAATTTCCCAAATGGAGCGAGCAATACCCTGCCAGACATGGACAGCTGGGGACCGATTATGGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCTTCGCAAAAGCAGTAGCTGATAATGATCTGTTAATGGCACAATGGATGAAGGATGAGTTACGCCAGATGGTATCAGTTTCAGGTGAACCGATTCAGAGGTTGGGGGCATACTTGCTGGAAGGACTAGTTGCACGGAAGGCATCCTCGGGGAGTAACATTTACAAAGCACTGAGATGCAAAGAACCAGCGAGTTCCGAACTCCTCTCTTACATGCACATTCTTTATGAGGTTTGTCCCTACTTCAAGTTTGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGACGAGAACCGAGTTCACATCATTGATTTCCAAATTGGTCAGGGGAGTCAGTGGATCACTCTAATCCAGGCTTTTGCATCCAGACCTGGTGGACCACCCCATATCCGTATAACAGGTATTGACGACTCCATGTCAGCTTATGCCCGTGGAGGAGGACTAAATATTGTGGGAAATAGGCTGTCTAAACTTGCTGAGTTGTTTAAGGTGCCGTTTGAGTTTCATGCTGCAGCCGTGTCTGGCTGCGACGTTCAGCTGGAGCATCTTGGTGTTCGACCTGGGGAGGCTTTGGCTATGAACTTTGCATTCATGCTGCACCACATGCCAGATGAGAGTGTCAGCACTCAGAACCATCGGGATAGGCTGTTGAGGTTGGTTAAGAGCTTGTCTCCGAAAGTGGTGACCCTCGTTGAGCAAGAATCTAACACAAATACTGCTGCATTTTATCCACGCTTTGTAGAAACTCTAAATTACTACACAGCTATGTTTGAGTCGATTGATGTTACTCTTCCGAGGGATCACAAGGACGTGTGA

Protein Analysis

524

Amino Acids

58.12

Weight (kDa)

5.85

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1246
AccBSI CCGCTC 1 cut(s) 502
AciI CCGC 1 cut(s) 502
AclWI GGATC 4 cut(s) 540, 553, 1103, 1563
AcsI RAATTY 4 cut(s) 46, 140, 154, 189
AdeI CACNNNGTG 1 cut(s) 455
AfaI GTAC 3 cut(s) 425, 581, 1004
AfiI CCNNNNNNNGG 1 cut(s) 542
AflIII ACRYGT 2 cut(s) 1005, 1566
AgeI ACCGGT 1 cut(s) 325
AgsI TTSAA 7 cut(s) 153, 163, 283, 389, 577, 733, 994
AhdI GACNNNNNGTC 1 cut(s) 1171
AhlI ACTAGT 1 cut(s) 874
AjiI CACGTC 1 cut(s) 1567
AjnI CCWGG 3 cut(s) 1107, 1126, 1315
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
Alw26I GTCTC 1 cut(s) 1431
AlwI GGATC 4 cut(s) 540, 553, 1103, 1563
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 895
ApeKI GCWGC 7 cut(s) 299, 415, 1265, 1268, 1281, 1351, 1475
ApoI RAATTY 4 cut(s) 46, 140, 154, 189
AseI ATTAAT 1 cut(s) 648
AsiGI ACCGGT 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 840
AspS9I GGNCC 3 cut(s) 614, 698, 1133
AsuHPI GGTGA 4 cut(s) 88, 441, 845, 1450
AsuII TTCGAA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 3 cut(s) 614, 698, 1133
BamHI GGATCC 1 cut(s) 545
BanI GGYRCC 1 cut(s) 1246
BbvI GCAGC 7 cut(s) 311, 402, 1252, 1268, 1280, 1338, 1462
BccI CCATC 2 cut(s) 811, 1398
BceAI ACGGC 2 cut(s) 1234, 1256
BciT130I CCWGG 3 cut(s) 1109, 1128, 1317
BcoDI GTCTC 1 cut(s) 1431
BcuI ACTAGT 1 cut(s) 874
BfaI CTAG 2 cut(s) 453, 875
BfmI CTRYAG 2 cut(s) 526, 1266
BisI GCNGC 7 cut(s) 300, 416, 1266, 1269, 1282, 1352, 1476
BlsI GCNGC 7 cut(s) 301, 417, 1267, 1270, 1283, 1353, 1477
Bme1390I CCNGG 3 cut(s) 1109, 1128, 1317
Bme18I GGWCC 3 cut(s) 614, 698, 1133
BmeRI GACNNNNNGTC 1 cut(s) 1171
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 1567
BmgT120I GGNCC 3 cut(s) 614, 698, 1133
BmiI GGNNCC 7 cut(s) 200, 378, 547, 615, 699, 1021, 1248
BmrFI CCNGG 3 cut(s) 1109, 1128, 1317
BmsI GCATC 6 cut(s) 300, 553, 899, 914, 1127, 1309
BplI GAGNNNNNCTC 2 cut(s) 1411, 1443
BpmI CTGGAG 1 cut(s) 1316
Bpu14I TTCGAA 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 372, 894, 1186, 1316, 1550
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 58, 131
Bse3DI GCAATG 1 cut(s) 1023
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 3 cut(s) 1109, 1128, 1317
BseDI CCNNGG 5 cut(s) 372, 894, 1186, 1316, 1550
BseGI GGATG 5 cut(s) 322, 801, 808, 890, 1118
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 1023
BseMII CTCAG 4 cut(s) 489, 911, 1224, 1397
BseNI ACTGG 2 cut(s) 58, 131
BseRI GAGGAG 2 cut(s) 941, 1206
BseXI GCAGC 7 cut(s) 311, 402, 1252, 1268, 1280, 1338, 1462
BseYI CCCAGC 3 cut(s) 394, 610, 693
BsgI GTGCAG 1 cut(s) 1337
BshNI GGYRCC 1 cut(s) 1246
BshTI ACCGGT 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 2 cut(s) 711, 969
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 1 cut(s) 1431
BsmFI GGGAC 2 cut(s) 711, 969
BsmI GAATGC 1 cut(s) 1343
BsoBI CYCGRG 1 cut(s) 895
Bsp119I TTCGAA 1 cut(s) 193
Bsp143I GATC 4 cut(s) 545, 775, 1095, 1555
BspACI CCGC 1 cut(s) 502
BspCNI CTCAG 4 cut(s) 490, 912, 1225, 1396
BspLI GGNNCC 7 cut(s) 200, 378, 547, 615, 699, 1021, 1248
BspMAI CTGCAG 1 cut(s) 1270
BspPI GGATC 4 cut(s) 540, 553, 1103, 1563
BspT104I TTCGAA 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 1246
BsrBI CCGCTC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 1023
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 2 cut(s) 58, 131
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 5 cut(s) 372, 894, 1186, 1316, 1550
BssMI GATC 4 cut(s) 545, 775, 1095, 1555
Bst2UI CCWGG 3 cut(s) 1109, 1128, 1317
Bst4CI ACNGT 2 cut(s) 114, 604
Bst6I CTCTTC 3 cut(s) 78, 284, 1551
BstAPI GCANNNNNTGC 1 cut(s) 1360
BstBI TTCGAA 1 cut(s) 193
BstC8I GCNNGC 4 cut(s) 185, 289, 369, 667
BstDEI CTNAG 4 cut(s) 498, 920, 1233, 1383
BstDSI CCRYGG 1 cut(s) 1186
BstEII GGTNACC 1 cut(s) 1438
BstF5I GGATG 5 cut(s) 322, 801, 808, 890, 1118
BstKTI GATC 4 cut(s) 548, 778, 1098, 1558
BstMAI GTCTC 1 cut(s) 1431
BstMBI GATC 4 cut(s) 545, 775, 1095, 1555
BstMWI GCNNNNNNNGC 4 cut(s) 338, 887, 1019, 1360
BstNI CCWGG 3 cut(s) 1109, 1128, 1317
BstNSI RCATGY 3 cut(s) 964, 1009, 1363
BstPI GGTNACC 1 cut(s) 1438
BstSCI CCNGG 3 cut(s) 1107, 1126, 1315
BstSFI CTRYAG 2 cut(s) 526, 1266
BstV1I GCAGC 7 cut(s) 311, 402, 1252, 1268, 1280, 1338, 1462
BstX2I RGATCY 1 cut(s) 545
BstYI RGATCY 1 cut(s) 545
BtgI CCRYGG 1 cut(s) 1186
BtrI CACGTC 1 cut(s) 1567
BtsCI GGATG 5 cut(s) 322, 801, 808, 890, 1118
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 5 cut(s) 21, 51, 110, 917, 1097
Cac8I GCNNGC 4 cut(s) 185, 289, 369, 667
CaiI CAGNNNCTG 1 cut(s) 767
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 614, 698, 1133
CsiI ACCWGGT 1 cut(s) 1126
Csp6I GTAC 3 cut(s) 424, 580, 1003
CspAI ACCGGT 1 cut(s) 325
CviAII CATG 8 cut(s) 685, 961, 1006, 1036, 1171, 1262, 1348, 1360
CviQI GTAC 3 cut(s) 424, 580, 1003
DdeI CTNAG 4 cut(s) 498, 920, 1233, 1383
DpnI GATC 4 cut(s) 547, 777, 1097, 1557
DpnII GATC 4 cut(s) 545, 775, 1095, 1555
DraIII CACNNNGTG 1 cut(s) 455
DriI GACNNNNNGTC 1 cut(s) 1171
Eam1104I CTCTTC 3 cut(s) 78, 284, 1551
Eam1105I GACNNNNNGTC 1 cut(s) 1171
EarI CTCTTC 3 cut(s) 78, 284, 1551
Eco47I GGWCC 3 cut(s) 614, 698, 1133
Eco88I CYCGRG 1 cut(s) 895
Eco91I GGTNACC 1 cut(s) 1438
EcoO109I RGGNCCY 1 cut(s) 614
EcoO65I GGTNACC 1 cut(s) 1438
EcoRI GAATTC 2 cut(s) 140, 189
EcoRII CCWGG 3 cut(s) 1107, 1126, 1315
FaeI CATG 8 cut(s) 688, 964, 1009, 1039, 1174, 1265, 1351, 1363
FaqI GGGAC 2 cut(s) 711, 969
FatI CATG 8 cut(s) 684, 960, 1005, 1035, 1170, 1261, 1347, 1359
Fnu4HI GCNGC 7 cut(s) 300, 416, 1266, 1269, 1282, 1352, 1476
FokI GGATG 5 cut(s) 329, 808, 815, 877, 1105
Fsp4HI GCNGC 7 cut(s) 300, 416, 1266, 1269, 1282, 1352, 1476
FspBI CTAG 2 cut(s) 453, 875
GluI GCNGC 7 cut(s) 300, 416, 1266, 1269, 1282, 1352, 1476
GsaI CCCAGC 3 cut(s) 398, 614, 697
GsuI CTGGAG 1 cut(s) 1316
HapII CCGG 1 cut(s) 326
Hin1II CATG 8 cut(s) 688, 964, 1009, 1039, 1174, 1265, 1351, 1363
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 147
HpaII CCGG 1 cut(s) 326
HphI GGTGA 4 cut(s) 88, 441, 845, 1450
Hpy166II GTNNAC 4 cut(s) 264, 836, 1057, 1133
Hpy188III TCNNGA 4 cut(s) 617, 632, 1122, 1394
Hpy8I GTNNAC 4 cut(s) 264, 836, 1057, 1133
Hpy99I CGWCG 1 cut(s) 1289
HpyAV CCTTC 6 cut(s) 189, 233, 793, 863, 880, 1033
HpyCH4III ACNGT 2 cut(s) 114, 604
HpyCH4IV ACGT 2 cut(s) 1287, 1566
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 887, 1019, 1360
HpyF3I CTNAG 4 cut(s) 498, 920, 1233, 1383
HpySE526I ACGT 2 cut(s) 1287, 1566
Hsp92II CATG 8 cut(s) 688, 964, 1009, 1039, 1174, 1265, 1351, 1363
Kzo9I GATC 4 cut(s) 545, 775, 1095, 1555
LmnI GCTCC 4 cut(s) 204, 662, 1019, 1297
Lsp1109I GCAGC 7 cut(s) 311, 402, 1252, 1268, 1280, 1338, 1462
LweI GCATC 6 cut(s) 300, 553, 899, 914, 1127, 1309
MabI ACCWGGT 1 cut(s) 1126
MaeI CTAG 2 cut(s) 453, 875
MaeII ACGT 2 cut(s) 1287, 1566
MaeIII GTNAC 6 cut(s) 102, 468, 807, 902, 1438, 1540
MalI GATC 4 cut(s) 547, 777, 1097, 1557
MbiI CCGCTC 1 cut(s) 502
MboI GATC 4 cut(s) 545, 775, 1095, 1555
MboII GAAGA 9 cut(s) 65, 68, 71, 74, 77, 271, 739, 742, 1538
MflI RGATCY 1 cut(s) 545
MluCI AATT 8 cut(s) 46, 140, 154, 189, 593, 649, 1074, 1507
MlyI GAGTC 6 cut(s) 110, 269, 473, 1096, 1160, 1538
MroXI GAANNNNTTC 1 cut(s) 840
MseI TTAA 4 cut(s) 648, 782, 1242, 1416
MslI CAYNNNNRTG 3 cut(s) 922, 1305, 1520
MspA1I CMGCKG 2 cut(s) 693, 1294
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 3 cut(s) 1109, 1128, 1317
Mva1269I GAATGC 1 cut(s) 1343
MvaI CCWGG 3 cut(s) 1109, 1128, 1317
MwoI GCNNNNNNNGC 4 cut(s) 338, 887, 1019, 1360
NdeII GATC 4 cut(s) 545, 775, 1095, 1555
NlaIII CATG 8 cut(s) 688, 964, 1009, 1039, 1174, 1265, 1351, 1363
NlaIV GGNNCC 7 cut(s) 200, 378, 547, 615, 699, 1021, 1248
NmuCI GTSAC 3 cut(s) 102, 468, 1438
NspI RCATGY 3 cut(s) 964, 1009, 1363
NspV TTCGAA 1 cut(s) 193
PciI ACATGT 1 cut(s) 1005
PctI GAATGC 1 cut(s) 1343
PdmI GAANNNNTTC 1 cut(s) 840
PfeI GAWTC 4 cut(s) 620, 710, 841, 1457
PinAI ACCGGT 1 cut(s) 325
PkrI GCNGC 7 cut(s) 301, 417, 1267, 1270, 1283, 1353, 1477
PleI GAGTC 6 cut(s) 109, 268, 473, 1095, 1160, 1537
PpsI GAGTC 6 cut(s) 109, 268, 473, 1095, 1160, 1537
PpuMI RGGWCCY 1 cut(s) 614
PscI ACATGT 1 cut(s) 1005
PshBI ATTAAT 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 614
Psp6I CCWGG 3 cut(s) 1107, 1126, 1315
PspEI GGTNACC 1 cut(s) 1438
PspFI CCCAGC 3 cut(s) 394, 610, 693
PspGI CCWGG 3 cut(s) 1107, 1126, 1315
PspN4I GGNNCC 7 cut(s) 200, 378, 547, 615, 699, 1021, 1248
PspPI GGNCC 3 cut(s) 614, 698, 1133
PspPPI RGGWCCY 1 cut(s) 614
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
PstI CTGCAG 1 cut(s) 1270
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 1 cut(s) 545
PvuII CAGCTG 2 cut(s) 693, 1294
RsaI GTAC 3 cut(s) 425, 581, 1004
RsaNI GTAC 3 cut(s) 424, 580, 1003
RseI CAYNNNNRTG 3 cut(s) 922, 1305, 1520
SaqAI TTAA 4 cut(s) 648, 782, 1242, 1416
SatI GCNGC 7 cut(s) 300, 416, 1266, 1269, 1282, 1352, 1476
Sau3AI GATC 4 cut(s) 545, 775, 1095, 1555
Sau96I GGNCC 3 cut(s) 614, 698, 1133
SchI GAGTC 6 cut(s) 110, 269, 473, 1096, 1160, 1538
ScrFI CCNGG 3 cut(s) 1109, 1128, 1317
SexAI ACCWGGT 1 cut(s) 1126
SfaNI GCATC 6 cut(s) 300, 553, 899, 914, 1127, 1309
SfcI CTRYAG 2 cut(s) 526, 1266
SfuI TTCGAA 1 cut(s) 193
SinI GGWCC 3 cut(s) 614, 698, 1133
SmiMI CAYNNNNRTG 3 cut(s) 922, 1305, 1520
SpeI ACTAGT 1 cut(s) 874
Sse9I AATT 8 cut(s) 46, 140, 154, 189, 593, 649, 1074, 1507
SsiI CCGC 1 cut(s) 502
SspI AATATT 2 cut(s) 628, 1204
SspMI CTAG 2 cut(s) 453, 875
StyD4I CCNGG 3 cut(s) 1107, 1126, 1315
TaaI ACNGT 2 cut(s) 114, 604
TaiI ACGT 2 cut(s) 1290, 1569
TaqI TCGA 4 cut(s) 193, 294, 1312, 1532
TaqII GACCGA 1 cut(s) 715
TasI AATT 8 cut(s) 46, 140, 154, 189, 593, 649, 1074, 1507
TatI WGTACW 1 cut(s) 579
TfiI GAWTC 4 cut(s) 620, 710, 841, 1457
Tru1I TTAA 4 cut(s) 648, 782, 1242, 1416
Tru9I TTAA 4 cut(s) 648, 782, 1242, 1416
TscAI CASTG 5 cut(s) 21, 58, 117, 924, 1097
TseFI GTSAC 3 cut(s) 102, 468, 1438
TseI GCWGC 7 cut(s) 299, 415, 1265, 1268, 1281, 1351, 1475
Tsp45I GTSAC 3 cut(s) 102, 468, 1438
TspDTI ATGAA 8 cut(s) 147, 477, 497, 812, 1052, 1250, 1336, 1349
TspGWI ACGGA 3 cut(s) 483, 898, 1136
TspRI CASTG 5 cut(s) 21, 58, 117, 924, 1097
VpaK11BI GGWCC 3 cut(s) 614, 698, 1133
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 4 cut(s) 46, 140, 154, 189
XceI RCATGY 3 cut(s) 964, 1009, 1363
XmnI GAANNNNTTC 1 cut(s) 840
XspI CTAG 2 cut(s) 453, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.