RLG00000034144

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
37296240 .. 37298706
2467 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034144

Sequence Viewer

Length: 1605 bp
ATGTTAAGAACTCACTTTAAAAACTTGTTACCACCCATTTCAAGGTTGTGGAAGAGGATGATGATGGAGCTGCATGGTAAGCCAGTTGAAGAGCCAGAGTCCTATGGTTTCCCTCCGATCCACAATGTTGTCATCCAAGGAGCAAATCTATCAGCTCATAACTTAGATCAGTATGAGTCATCCTCAGCAACCAGTAATTACCATGTTCAAAGTTCTCCATCTAGTTTAAGTTTCTCAGCAAATGGAAGTTCGACATCACAGCCAGAGTTGCAGTCTAACCAGTCTAGTGGGTCTCCAATTAACCAGTCTAGCTTAACAAACGACGGCGGTGGCCTGAGCCACAAGATAAGGGAACTGGAAAGTGTTTTGCTTGGAAATGAGTCAGATGTCCTTGACATATATGGTATCACAAGTCAGGTTAGGCATAACCGAGTGTCGTCAGAAGAGCAGAACTGGAAACAAATGATGGAGATGATCTCCAGAGGTGACTTGAAAGAGGTGCTTTGTGCTTGTGCTAAAGCATTGGCAGAAAATGATATGTCAACAACTGAATGGTTAATGTCAAATTTACGTCAGATGGTATCAGTTTCAGGTGCGCCAATCCAACGTTTAGGAGCTTACATGTTGGAAGGTCTTGTTGCAAGGTTGGCCTCTTCAGGGAGTTGCATCTATGCATCATTAAGATGCAAAGAGCCTGCTAGTGCTGAACTCCTGTCATACATGCACATGCTATATGAAGTCTGCCCATACTTCAAGTTTGGGTACATGTCAGCCAACGGGGCGATTGCAGAAGCCATGAAGAATGAAAGTAGAGTTCATATAATTGATTTTCAGATTGGGCAAGGCAGCCAGTGGATAACCTTGATCCAGGCTTTAGCTACTCGGCCTGGAGGGCCTCCACATATTAGGCTGACGGGGATAGATGATTCTACATCAGCTTATGCACGGGGAGGGGGACTTGATCTTGTGGGAAAGAGGTTGTCAAGGCTTGCAGAGTCATATAAGGTACCCTTTGAGTTCCATGCTGCTGGAATTTCTGCTTCTGAGGTTCAGGTTGAGGACCTTGGAGTTCAAATGGGTGAGGCACTTGCAGTGAATTTTGCCTTCATGCTGCACCACATGCCAGATGAGAGTGTGAGCATCCAAAATCCTAGGGACCGGCTGTTGAGGGTAGTTAAGAGCTTGTCTCCCAAGGTTGTGACTCTTGTTGAGCAAGAATCAAACACCAACACAGCCCCATTCTGTCCCCGTTTCGCTGAGACATTCAGTTACTTTAGCGCTGTTTTCGAGTCAATTGATGTGGCTTTGCCAAGGGAACACAAAGAGCGGATCAATGTTGAGCAGCACTGTCTGGCACGAGAAATTGTCAACATTATAGCTTGTGAAGGGGTCGAAAGAGTAGAACGTACTGAGCTTCTCAGCAAGTGGAGGTCACGATTTATTATGGCTGGGTTTTCACCTTATCCACTCAGCTCCATAATAAATGCCACTATCAAGAACCTGTTGCAGAGCTATTCTGAGAAGTATACACTTGAAGAGAGAGATGGAGCCTTATACCTCGGCTGGATGAATCAAGCTCTTGTTGCCTCCTGTGCATGGAGGTAA

Protein Analysis

535

Amino Acids

59.29

Weight (kDa)

5.96

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 164 - 534 3.2e-140 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 1006
AccBSI CCGCTC 1 cut(s) 1327
AccI GTMKAC 1 cut(s) 1526
AciI CCGC 2 cut(s) 327, 1327
AclI AACGTT 1 cut(s) 607
AclWI GGATC 3 cut(s) 112, 859, 1337
AcsI RAATTY 3 cut(s) 565, 1032, 1096
AcuI CTGAAG 1 cut(s) 639
AfaI GTAC 3 cut(s) 764, 1008, 1408
AfeI AGCGCT 1 cut(s) 1279
AfiI CCNNNNNNNGG 3 cut(s) 42, 657, 1596
AflIII ACRYGT 2 cut(s) 621, 765
AgsI TTSAA 7 cut(s) 42, 89, 209, 493, 754, 1073, 1535
AjnI CCWGG 2 cut(s) 867, 886
Alw26I GTCTC 3 cut(s) 297, 1191, 1253
AlwI GGATC 3 cut(s) 112, 859, 1337
Aor51HI AGCGCT 1 cut(s) 1279
AoxI GGCC 4 cut(s) 331, 648, 884, 893
ApeKI GCWGC 5 cut(s) 70, 846, 1025, 1111, 1342
ApoI RAATTY 3 cut(s) 565, 1032, 1096
Asp718I GGTACC 1 cut(s) 1006
AspA2I CCTAGG 1 cut(s) 1151
AspLEI GCGC 2 cut(s) 598, 1280
AspS9I GGNCC 3 cut(s) 893, 1060, 1156
AsuHPI GGTGA 3 cut(s) 497, 1091, 1449
AvaII GGWCC 2 cut(s) 1060, 1156
AvrII CCTAGG 1 cut(s) 1151
BanI GGYRCC 1 cut(s) 1006
BauI CACGAG 1 cut(s) 1356
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 5 cut(s) 57, 858, 1012, 1098, 1354
BccI CCATC 5 cut(s) 58, 226, 460, 571, 1538
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 2 cut(s) 869, 888
BcoDI GTCTC 3 cut(s) 297, 1191, 1253
BfaI CTAG 5 cut(s) 222, 285, 309, 699, 1152
BfoI RGCGCY 1 cut(s) 1281
BglI GCCNNNNNGGC 2 cut(s) 779, 892
BisI GCNGC 5 cut(s) 71, 847, 1026, 1112, 1343
BlnI CCTAGG 1 cut(s) 1151
BlsI GCNGC 5 cut(s) 72, 848, 1027, 1113, 1344
Bme1390I CCNGG 2 cut(s) 869, 888
Bme18I GGWCC 2 cut(s) 1060, 1156
BmgT120I GGNCC 3 cut(s) 893, 1060, 1156
BmiI GGNNCC 3 cut(s) 1008, 1157, 1549
BmrFI CCNGG 2 cut(s) 869, 888
BmsI GCATC 4 cut(s) 674, 675, 683, 1149
BplI GAGNNNNNCTC 6 cut(s) 167, 199, 461, 493, 1171, 1203
BpmI CTGGAG 2 cut(s) 463, 909
Bpu10I CCTNAGC 2 cut(s) 184, 335
BsaI GGTCTC 1 cut(s) 297
BsaJI CCNNGG 6 cut(s) 136, 1063, 1151, 1191, 1310, 1558
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 657, 1596
Bse118I RCCGGY 1 cut(s) 1158
Bse1I ACTGG 7 cut(s) 83, 192, 280, 304, 360, 458, 850
BseBI CCWGG 2 cut(s) 869, 888
BseDI CCNNGG 6 cut(s) 136, 1063, 1151, 1191, 1310, 1558
BseGI GGATG 5 cut(s) 63, 132, 179, 1140, 1572
BseLI CCNNNNNNNGG 3 cut(s) 42, 657, 1596
BseMII CTCAG 9 cut(s) 198, 249, 326, 1035, 1248, 1401, 1432, 1483, 1509
BseNI ACTGG 7 cut(s) 83, 192, 280, 304, 360, 458, 850
BseXI GCAGC 5 cut(s) 57, 858, 1012, 1098, 1354
BseYI CCCAGC 1 cut(s) 1448
BsgI GTGCAG 1 cut(s) 1097
BshFI GGCC 4 cut(s) 333, 650, 886, 895
BshNI GGYRCC 1 cut(s) 1006
BsiSI CCGG 1 cut(s) 1159
BslFI GGGAC 3 cut(s) 969, 1169, 1230
BslI CCNNNNNNNGG 3 cut(s) 42, 657, 1596
BsmAI GTCTC 3 cut(s) 297, 1191, 1253
BsmFI GGGAC 3 cut(s) 969, 1169, 1230
BsnI GGCC 4 cut(s) 333, 650, 886, 895
Bso31I GGTCTC 1 cut(s) 297
Bsp143I GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
BspACI CCGC 2 cut(s) 327, 1327
BspANI GGCC 4 cut(s) 333, 650, 886, 895
BspCNI CTCAG 9 cut(s) 197, 248, 327, 1036, 1249, 1402, 1431, 1482, 1510
BspLI GGNNCC 3 cut(s) 1008, 1157, 1549
BspPI GGATC 3 cut(s) 112, 859, 1337
BspQI GCTCTTC 2 cut(s) 84, 438
BspT107I GGYRCC 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 297
BsrBI CCGCTC 1 cut(s) 1327
BsrFI RCCGGY 1 cut(s) 1158
BsrI ACTGG 7 cut(s) 83, 192, 280, 304, 360, 458, 850
BssAI RCCGGY 1 cut(s) 1158
BssECI CCNNGG 6 cut(s) 136, 1063, 1151, 1191, 1310, 1558
BssMI GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
BssNAI GTATAC 1 cut(s) 1527
BssSI CACGAG 1 cut(s) 1356
BssT1I CCWWGG 5 cut(s) 136, 1063, 1151, 1191, 1310
Bst1107I GTATAC 1 cut(s) 1527
Bst2BI CACGAG 1 cut(s) 1356
Bst2UI CCWGG 2 cut(s) 869, 888
Bst4CI ACNGT 1 cut(s) 1349
Bst6I CTCTTC 5 cut(s) 47, 84, 438, 658, 1530
BstAPI GCANNNNNTGC 1 cut(s) 1120
BstC8I GCNNGC 2 cut(s) 696, 990
BstF5I GGATG 5 cut(s) 63, 132, 179, 1140, 1572
BstH2I RGCGCY 1 cut(s) 1281
BstHHI GCGC 2 cut(s) 598, 1280
BstKTI GATC 6 cut(s) 120, 169, 477, 867, 964, 1332
BstMAI GTCTC 3 cut(s) 297, 1191, 1253
BstMBI GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
BstMWI GCNNNNNNNGC 8 cut(s) 79, 268, 647, 779, 892, 1120, 1583, 1592
BstNI CCWGG 2 cut(s) 869, 888
BstNSI RCATGY 5 cut(s) 625, 724, 730, 769, 1123
BstSCI CCNGG 2 cut(s) 867, 886
BstV1I GCAGC 5 cut(s) 57, 858, 1012, 1098, 1354
BstXI CCANNNNNNTGG 2 cut(s) 287, 1028
BstZ17I GTATAC 1 cut(s) 1527
BsuRI GGCC 4 cut(s) 333, 650, 886, 895
BtsCI GGATG 5 cut(s) 63, 132, 179, 1140, 1572
BtsI GCAGTG 1 cut(s) 1098
BtsIMutI CAGTG 3 cut(s) 857, 1098, 1345
Cac8I GCNNGC 2 cut(s) 696, 990
CfoI GCGC 2 cut(s) 598, 1280
Cfr10I RCCGGY 1 cut(s) 1158
Cfr13I GGNCC 3 cut(s) 893, 1060, 1156
Csp6I GTAC 3 cut(s) 763, 1007, 1407
CspCI CAANNNNNGTGG 2 cut(s) 1281, 1316
CviQI GTAC 3 cut(s) 763, 1007, 1407
DpnI GATC 6 cut(s) 119, 168, 476, 866, 963, 1331
DpnII GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
DraI TTTAAA 1 cut(s) 19
Eam1104I CTCTTC 5 cut(s) 47, 84, 438, 658, 1530
EarI CTCTTC 5 cut(s) 47, 84, 438, 658, 1530
Eco130I CCWWGG 5 cut(s) 136, 1063, 1151, 1191, 1310
Eco31I GGTCTC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 1060, 1156
Eco47III AGCGCT 1 cut(s) 1279
Eco57I CTGAAG 1 cut(s) 639
EcoO109I RGGNCCY 2 cut(s) 893, 1060
EcoRII CCWGG 2 cut(s) 867, 886
EcoT14I CCWWGG 5 cut(s) 136, 1063, 1151, 1191, 1310
EcoT22I ATGCAT 1 cut(s) 676
ErhI CCWWGG 5 cut(s) 136, 1063, 1151, 1191, 1310
FalI AAGNNNNNCTT 4 cut(s) 486, 518, 995, 1027
FaqI GGGAC 3 cut(s) 969, 1169, 1230
FblI GTMKAC 1 cut(s) 1526
Fnu4HI GCNGC 5 cut(s) 71, 847, 1026, 1112, 1343
FokI GGATG 5 cut(s) 70, 119, 166, 1127, 1579
Fsp4HI GCNGC 5 cut(s) 71, 847, 1026, 1112, 1343
FspBI CTAG 5 cut(s) 222, 285, 309, 699, 1152
GlaI GCGC 2 cut(s) 597, 1279
GluI GCNGC 5 cut(s) 71, 847, 1026, 1112, 1343
GsaI CCCAGC 1 cut(s) 1452
GsuI CTGGAG 2 cut(s) 463, 909
HaeII RGCGCY 1 cut(s) 1281
HaeIII GGCC 4 cut(s) 333, 650, 886, 895
HapII CCGG 1 cut(s) 1159
HhaI GCGC 2 cut(s) 598, 1280
Hin6I GCGC 2 cut(s) 596, 1278
HinP1I GCGC 2 cut(s) 596, 1278
HincII GTYRAC 2 cut(s) 543, 1369
HindII GTYRAC 2 cut(s) 543, 1369
HinfI GANTC 9 cut(s) 98, 176, 380, 926, 995, 1201, 1217, 1289, 1570
HpaII CCGG 1 cut(s) 1159
HphI GGTGA 3 cut(s) 497, 1091, 1449
Hpy166II GTNNAC 3 cut(s) 543, 1369, 1527
Hpy188I TCNGA 7 cut(s) 117, 385, 442, 576, 834, 1045, 1519
Hpy188III TCNNGA 3 cut(s) 480, 1434, 1495
Hpy8I GTNNAC 3 cut(s) 543, 1369, 1527
Hpy99I CGWCG 1 cut(s) 326
HpyAV CCTTC 3 cut(s) 623, 1114, 1379
HpyCH4III ACNGT 1 cut(s) 1349
HpyCH4IV ACGT 3 cut(s) 571, 607, 1405
HpyF10VI GCNNNNNNNGC 8 cut(s) 79, 268, 647, 779, 892, 1120, 1583, 1592
HpySE526I ACGT 3 cut(s) 571, 607, 1405
HspAI GCGC 2 cut(s) 596, 1278
KpnI GGTACC 1 cut(s) 1010
Kzo9I GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
LguI GCTCTTC 2 cut(s) 84, 438
LmnI GCTCC 5 cut(s) 67, 140, 614, 1478, 1547
Lsp1109I GCAGC 5 cut(s) 57, 858, 1012, 1098, 1354
LweI GCATC 4 cut(s) 674, 675, 683, 1149
MaeI CTAG 5 cut(s) 222, 285, 309, 699, 1152
MaeII ACGT 3 cut(s) 571, 607, 1405
MaeIII GTNAC 5 cut(s) 27, 485, 1198, 1268, 1431
MalI GATC 6 cut(s) 119, 168, 476, 866, 963, 1331
MbiI CCGCTC 1 cut(s) 1327
MboI GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
MboII GAAGA 6 cut(s) 64, 101, 455, 645, 811, 1547
MfeI CAATTG 1 cut(s) 1293
MluCI AATT 8 cut(s) 196, 297, 565, 822, 1032, 1096, 1293, 1362
MlyI GAGTC 6 cut(s) 107, 185, 389, 1004, 1195, 1298
MmeI TCCRAC 2 cut(s) 606, 628
Mph1103I ATGCAT 1 cut(s) 676
MseI TTAA 8 cut(s) 5, 18, 227, 300, 314, 557, 680, 1176
MslI CAYNNNNRTG 2 cut(s) 682, 725
MspI CCGG 1 cut(s) 1159
MspR9I CCNGG 2 cut(s) 869, 888
MunI CAATTG 1 cut(s) 1293
MvaI CCWGG 2 cut(s) 869, 888
MwoI GCNNNNNNNGC 8 cut(s) 79, 268, 647, 779, 892, 1120, 1583, 1592
NdeII GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
NlaIV GGNNCC 3 cut(s) 1008, 1157, 1549
NmeAIII GCCGAG 2 cut(s) 862, 1539
NmuCI GTSAC 3 cut(s) 485, 1198, 1431
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 5 cut(s) 625, 724, 730, 769, 1123
PciI ACATGT 2 cut(s) 621, 765
PciSI GCTCTTC 2 cut(s) 84, 438
PfeI GAWTC 3 cut(s) 926, 1217, 1570
PkrI GCNGC 5 cut(s) 72, 848, 1027, 1113, 1344
PleI GAGTC 6 cut(s) 106, 184, 388, 1003, 1195, 1297
PpsI GAGTC 6 cut(s) 106, 184, 388, 1003, 1195, 1297
PpuMI RGGWCCY 1 cut(s) 1060
PscI ACATGT 2 cut(s) 621, 765
Psp1406I AACGTT 1 cut(s) 607
Psp5II RGGWCCY 1 cut(s) 1060
Psp6I CCWGG 2 cut(s) 867, 886
PspFI CCCAGC 1 cut(s) 1448
PspGI CCWGG 2 cut(s) 867, 886
PspN4I GGNNCC 3 cut(s) 1008, 1157, 1549
PspPI GGNCC 3 cut(s) 893, 1060, 1156
PspPPI RGGWCCY 1 cut(s) 1060
RsaI GTAC 3 cut(s) 764, 1008, 1408
RsaNI GTAC 3 cut(s) 763, 1007, 1407
RseI CAYNNNNRTG 2 cut(s) 682, 725
SapI GCTCTTC 2 cut(s) 84, 438
SaqAI TTAA 8 cut(s) 5, 18, 227, 300, 314, 557, 680, 1176
SatI GCNGC 5 cut(s) 71, 847, 1026, 1112, 1343
Sau3AI GATC 6 cut(s) 117, 166, 474, 864, 961, 1329
Sau96I GGNCC 3 cut(s) 893, 1060, 1156
SchI GAGTC 6 cut(s) 107, 185, 389, 1004, 1195, 1298
ScrFI CCNGG 2 cut(s) 869, 888
SfaNI GCATC 4 cut(s) 674, 675, 683, 1149
SfiI GGCCNNNNNGGCC 1 cut(s) 892
SinI GGWCC 2 cut(s) 1060, 1156
SmiMI CAYNNNNRTG 2 cut(s) 682, 725
Sse9I AATT 8 cut(s) 196, 297, 565, 822, 1032, 1096, 1293, 1362
SsiI CCGC 2 cut(s) 327, 1327
SspMI CTAG 5 cut(s) 222, 285, 309, 699, 1152
StyD4I CCNGG 2 cut(s) 867, 886
StyI CCWWGG 5 cut(s) 136, 1063, 1151, 1191, 1310
TaaI ACNGT 1 cut(s) 1349
TaiI ACGT 3 cut(s) 574, 610, 1408
TaqI TCGA 3 cut(s) 251, 1287, 1392
TasI AATT 8 cut(s) 196, 297, 565, 822, 1032, 1096, 1293, 1362
TfiI GAWTC 3 cut(s) 926, 1217, 1570
Tru1I TTAA 8 cut(s) 5, 18, 227, 300, 314, 557, 680, 1176
Tru9I TTAA 8 cut(s) 5, 18, 227, 300, 314, 557, 680, 1176
TscAI CASTG 3 cut(s) 857, 1098, 1352
TseFI GTSAC 3 cut(s) 485, 1198, 1431
TseI GCWGC 5 cut(s) 70, 846, 1025, 1111, 1342
Tsp45I GTSAC 3 cut(s) 485, 1198, 1431
TspDTI ATGAA 6 cut(s) 750, 806, 812, 819, 1096, 1583
TspRI CASTG 3 cut(s) 857, 1098, 1352
VpaK11BI GGWCC 2 cut(s) 1060, 1156
XapI RAATTY 3 cut(s) 565, 1032, 1096
XceI RCATGY 5 cut(s) 625, 724, 730, 769, 1123
XmaJI CCTAGG 1 cut(s) 1151
XmiI GTMKAC 1 cut(s) 1526
XspI CTAG 5 cut(s) 222, 285, 309, 699, 1152
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.