MD17G1112700.v1.1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
9646869 .. 9650669
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1112700.v1.1.491

Sequence Viewer

Length: 1656 bp
ATGCAAGCATCGAAGCAGCAGAGAAGTTCAGGGATGTCAAACCGGTTGCATTATCAGCCAATCCAAGAAGTAGAAGCCTACTGCTTGCCTCGGTTCCAAACTTTGGACCCCCAGCTACATTACAACGAGAGCAGCCAAAGTACCCACCTCCCAATGCAGAGTTTCCACTACTGCACTTTGGAGTCTTCCTGGTCTAATGGTAGCTACACCATTTATAACTCCCCATCAAATGTCAGCTTCTCACCTAGTGGAAGCCCGATGTCACAGCAAGACTCTCATTCATATCCGTCTGAGCGGTATCATTCCCCTGACCAGACCTACAGCTCTCCGATAAGCGGATCCTGCATAACTGATGATGCACCTGACTTCAAGTACAAGCTGAAACAATTAGAAACTGTAATGCTGGGTCCTGATTCCAACATTCTTGATAACTATTGCATTAATTTCCCGAATGGAGCGAGCAATACCCTGCCAGACACAGACAGCTTGGGACAGATTATGGAATCAATCTCTAAAAAGGATTTGAAGCAAGTCCTCATCTTCTTCGCAAAAGCAGTAGCTGATAATGATCTGTTAATGGCACAATGGATGAAGGATGAGTTACGCCAGATGGTATCGGTTTCAGGTGAACCGATTCAGAGGTTGGGGGCATACTTGCTGGAAGGACTAGTTGCACGGAAGGCATCCTCGGGGAGTAACATTTACAAAGCACTGAGATGCAAAGAACCAGCGAGGTCCGAACTCCTCTCTTACATGCACATTCTTTATGAGGTTTGTCCCTACTTCAAGTTTGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCCATGAAGGACGAGAACCGAGTTCACATCATTGATTTCCAAATCGGTCAGGGGAGTCAGTGGATCACTCTAATCCAGGCTTTTGCATCCAGACCTGGTGGACCACCCCATATCCGTATAACAGGTATTGACGACTCCATGTCAGCTTATGCCCGTGGGGGAGGACTAAATATTGTGGGAAAGGCGCTGTCTAAACTTGCTGAGTCGTTTAAGGTGCCGTTTGAGTTTCATGCTGCAGCCATGTCTGGCTGCGACGTTCAGCTGGGGCATCTTGGTGTTCGACCTGGGGAGGCTTTGGCTGTGAACTTTGCTTTCATGCTGCACCACATGCCAGATGAGAGTGTCAGCACTCAGAACCATCGGGATAGGCTGTTGAGGTTGGTTAAGAGCTTGTCTCCGAAAGTGGTGACCCTCGTTGAGCAAGAATCTAACACAAACACTGCTGCATTTTATCCACGCTTTGTAGAAACACTAAATTACTACACAGCTATGTTTGAGTCAATTGATGTTACTCTTCCGAGGGATCACAAGGAGCGGATCAATGTGGAGCAACACTGCTTGGCTAGGGAGGTTGTTAACATAATAGCATGTGAGGGCATTGAAAGGGTGGAAAGACACGAACTTCTTGGGAAATGGAGGTTGCGCTTCGCAATGGCTGGATTTACACCATACCCTCTCAGCTCATTGGTAAATGCCACCATCAAGACGCTGCTAGAGAACTACTCTGACAAATATCGACTTGAAGAGCGGGATGGAGCACTCTATCTTGGCTGGAAGAACAGAGATTTGGTTGCTTCTTGTGCATGGAGGTGCAAACCGAGCACGAATTGA

Protein Analysis

552

Amino Acids

61.95

Weight (kDa)

6.39

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 175 - 545 2.1e-139 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 1039
AccB7I CCANNNNNTGG 1 cut(s) 103
AccBSI CCGCTC 3 cut(s) 295, 1360, 1573
AciI CCGC 4 cut(s) 295, 336, 1360, 1573
AclWI GGATC 5 cut(s) 333, 346, 896, 1356, 1370
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 3 cut(s) 142, 374, 797
AfiI CCNNNNNNNGG 2 cut(s) 103, 335
AflIII ACRYGT 1 cut(s) 798
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 5 cut(s) 370, 526, 787, 1427, 1568
AhdI GACNNNNNGTC 1 cut(s) 964
AhlI ACTAGT 1 cut(s) 667
AjnI CCWGG 4 cut(s) 188, 900, 919, 1108
AjuI GAANNNNNNNTTGG 2 cut(s) 1595, 1627
Alw21I GWGCWC 2 cut(s) 1585, 1649
Alw26I GTCTC 1 cut(s) 1224
AlwI GGATC 5 cut(s) 333, 346, 896, 1356, 1370
AlwNI CAGNNNCTG 1 cut(s) 560
Ama87I CYCGRG 1 cut(s) 688
ApeKI GCWGC 8 cut(s) 16, 132, 1058, 1061, 1074, 1144, 1268, 1534
AseI ATTAAT 1 cut(s) 441
AsiGI ACCGGT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 2 cut(s) 1012, 1470
AspS9I GGNCC 4 cut(s) 106, 407, 735, 926
AsuHPI GGTGA 3 cut(s) 234, 638, 1243
AvaI CYCGRG 1 cut(s) 688
AvaII GGWCC 4 cut(s) 106, 407, 735, 926
BamHI GGATCC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 1039
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 2 cut(s) 1585, 1649
BbvI GCAGC 8 cut(s) 28, 144, 1045, 1061, 1073, 1131, 1255, 1521
BccI CCATC 5 cut(s) 232, 604, 1191, 1532, 1571
BceAI ACGGC 1 cut(s) 1027
BciT130I CCWGG 4 cut(s) 190, 902, 921, 1110
BcoDI GTCTC 1 cut(s) 1224
BcuI ACTAGT 1 cut(s) 667
BfaI CTAG 4 cut(s) 246, 668, 1389, 1538
BfmI CTRYAG 2 cut(s) 319, 1059
BfoI RGCGCY 1 cut(s) 1013
BisI GCNGC 8 cut(s) 17, 133, 1059, 1062, 1075, 1145, 1269, 1535
BlsI GCNGC 8 cut(s) 18, 134, 1060, 1063, 1076, 1146, 1270, 1536
Bme1390I CCNGG 4 cut(s) 190, 902, 921, 1110
Bme18I GGWCC 4 cut(s) 106, 407, 735, 926
BmeRI GACNNNNNGTC 1 cut(s) 964
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 4 cut(s) 106, 407, 735, 926
BmiI GGNNCC 6 cut(s) 95, 108, 340, 408, 814, 1041
BmrFI CCNGG 4 cut(s) 190, 902, 921, 1110
BmsI GCATC 6 cut(s) 17, 346, 692, 707, 920, 1102
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 4 cut(s) 1204, 1236, 1532, 1564
BsaBI GATNNNNATC 1 cut(s) 567
BsaJI CCNNGG 5 cut(s) 89, 687, 979, 1109, 1343
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 335
Bse118I RCCGGY 1 cut(s) 42
Bse3DI GCAATG 2 cut(s) 816, 1482
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 4 cut(s) 190, 902, 921, 1110
BseDI CCNNGG 5 cut(s) 89, 687, 979, 1109, 1343
BseGI GGATG 6 cut(s) 39, 594, 601, 683, 911, 1582
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 2 cut(s) 103, 335
BseMI GCAATG 2 cut(s) 816, 1482
BseMII CTCAG 5 cut(s) 282, 704, 1017, 1190, 1516
BseRI GAGGAG 1 cut(s) 734
BseXI GCAGC 8 cut(s) 28, 144, 1045, 1061, 1073, 1131, 1255, 1521
BseYI CCCAGC 3 cut(s) 111, 403, 1087
BsgI GTGCAG 2 cut(s) 157, 1130
BshNI GGYRCC 1 cut(s) 1039
BshTI ACCGGT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 1585, 1649
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 504, 762
BslI CCNNNNNNNGG 2 cut(s) 103, 335
BsmAI GTCTC 1 cut(s) 1224
BsmFI GGGAC 2 cut(s) 504, 762
BsoBI CYCGRG 1 cut(s) 688
Bsp1286I GDGCHC 2 cut(s) 1585, 1649
Bsp143I GATC 5 cut(s) 338, 568, 888, 1348, 1362
BspACI CCGC 4 cut(s) 295, 336, 1360, 1573
BspCNI CTCAG 5 cut(s) 283, 705, 1018, 1189, 1515
BspLI GGNNCC 6 cut(s) 95, 108, 340, 408, 814, 1041
BspMAI CTGCAG 1 cut(s) 1063
BspPI GGATC 5 cut(s) 333, 346, 896, 1356, 1370
BspQI GCTCTTC 1 cut(s) 1563
BspT107I GGYRCC 1 cut(s) 1039
BsrBI CCGCTC 3 cut(s) 295, 1360, 1573
BsrDI GCAATG 2 cut(s) 816, 1482
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 5 cut(s) 89, 687, 979, 1109, 1343
BssMI GATC 5 cut(s) 338, 568, 888, 1348, 1362
Bst2UI CCWGG 4 cut(s) 190, 902, 921, 1110
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 2 cut(s) 1344, 1563
BstAPI GCANNNNNTGC 1 cut(s) 1153
BstC8I GCNNGC 3 cut(s) 6, 86, 460
BstDEI CTNAG 5 cut(s) 291, 713, 1026, 1176, 1502
BstDSI CCRYGG 1 cut(s) 979
BstEII GGTNACC 1 cut(s) 1231
BstF5I GGATG 6 cut(s) 39, 594, 601, 683, 911, 1582
BstH2I RGCGCY 1 cut(s) 1013
BstHHI GCGC 2 cut(s) 1012, 1470
BstKTI GATC 5 cut(s) 341, 571, 891, 1351, 1365
BstMAI GTCTC 1 cut(s) 1224
BstMBI GATC 5 cut(s) 338, 568, 888, 1348, 1362
BstMWI GCNNNNNNNGC 7 cut(s) 55, 342, 680, 812, 1153, 1625, 1644
BstNI CCWGG 4 cut(s) 190, 902, 921, 1110
BstNSI RCATGY 4 cut(s) 757, 802, 1156, 1416
BstPI GGTNACC 1 cut(s) 1231
BstSCI CCNGG 4 cut(s) 188, 900, 919, 1108
BstSFI CTRYAG 2 cut(s) 319, 1059
BstV1I GCAGC 8 cut(s) 28, 144, 1045, 1061, 1073, 1131, 1255, 1521
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BtgI CCRYGG 1 cut(s) 979
BtsCI GGATG 6 cut(s) 39, 594, 601, 683, 911, 1582
BtsI GCAGTG 2 cut(s) 1263, 1378
BtsIMutI CAGTG 4 cut(s) 710, 890, 1263, 1378
Cac8I GCNNGC 3 cut(s) 6, 86, 460
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 2 cut(s) 1012, 1470
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 106, 407, 735, 926
CseI GACGC 1 cut(s) 1540
CsiI ACCWGGT 1 cut(s) 919
Csp6I GTAC 3 cut(s) 141, 373, 796
CspAI ACCGGT 1 cut(s) 42
CviQI GTAC 3 cut(s) 141, 373, 796
DdeI CTNAG 5 cut(s) 291, 713, 1026, 1176, 1502
DpnI GATC 5 cut(s) 340, 570, 890, 1350, 1364
DpnII GATC 5 cut(s) 338, 568, 888, 1348, 1362
DraIII CACNNNGTG 1 cut(s) 248
DriI GACNNNNNGTC 1 cut(s) 964
Eam1104I CTCTTC 2 cut(s) 1344, 1563
Eam1105I GACNNNNNGTC 1 cut(s) 964
EarI CTCTTC 2 cut(s) 1344, 1563
Eco47I GGWCC 4 cut(s) 106, 407, 735, 926
Eco88I CYCGRG 1 cut(s) 688
Eco91I GGTNACC 1 cut(s) 1231
EcoO109I RGGNCCY 1 cut(s) 407
EcoO65I GGTNACC 1 cut(s) 1231
EcoRII CCWGG 4 cut(s) 188, 900, 919, 1108
FaqI GGGAC 2 cut(s) 504, 762
FauI CCCGC 1 cut(s) 1566
Fnu4HI GCNGC 8 cut(s) 17, 133, 1059, 1062, 1075, 1145, 1269, 1535
FokI GGATG 6 cut(s) 46, 601, 608, 670, 898, 1589
Fsp4HI GCNGC 8 cut(s) 17, 133, 1059, 1062, 1075, 1145, 1269, 1535
FspBI CTAG 4 cut(s) 246, 668, 1389, 1538
GlaI GCGC 2 cut(s) 1011, 1469
GluI GCNGC 8 cut(s) 17, 133, 1059, 1062, 1075, 1145, 1269, 1535
GsaI CCCAGC 3 cut(s) 115, 407, 1091
HaeII RGCGCY 1 cut(s) 1013
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 1540
HhaI GCGC 2 cut(s) 1012, 1470
Hin6I GCGC 2 cut(s) 1010, 1468
HinP1I GCGC 2 cut(s) 1010, 1468
HincII GTYRAC 1 cut(s) 1402
HindII GTYRAC 1 cut(s) 1402
HpaI GTTAAC 1 cut(s) 1402
HpaII CCGG 1 cut(s) 43
HphI GGTGA 3 cut(s) 234, 638, 1243
Hpy166II GTNNAC 5 cut(s) 629, 850, 926, 1129, 1402
Hpy188I TCNGA 8 cut(s) 292, 330, 639, 739, 1179, 1224, 1344, 1552
Hpy188III TCNNGA 6 cut(s) 410, 425, 448, 915, 1187, 1528
Hpy8I GTNNAC 5 cut(s) 629, 850, 926, 1129, 1402
Hpy99I CGWCG 1 cut(s) 1082
HpyAV CCTTC 4 cut(s) 586, 656, 673, 826
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 1080
HpyF10VI GCNNNNNNNGC 7 cut(s) 55, 342, 680, 812, 1153, 1625, 1644
HpyF3I CTNAG 5 cut(s) 291, 713, 1026, 1176, 1502
HpySE526I ACGT 1 cut(s) 1080
HspAI GCGC 2 cut(s) 1010, 1468
KspAI GTTAAC 1 cut(s) 1402
Kzo9I GATC 5 cut(s) 338, 568, 888, 1348, 1362
LguI GCTCTTC 1 cut(s) 1563
LmnI GCTCC 5 cut(s) 455, 812, 1357, 1372, 1580
Lsp1109I GCAGC 8 cut(s) 28, 144, 1045, 1061, 1073, 1131, 1255, 1521
LweI GCATC 6 cut(s) 17, 346, 692, 707, 920, 1102
MabI ACCWGGT 1 cut(s) 919
MaeI CTAG 4 cut(s) 246, 668, 1389, 1538
MaeII ACGT 1 cut(s) 1080
MaeIII GTNAC 5 cut(s) 261, 600, 695, 1231, 1333
MalI GATC 5 cut(s) 340, 570, 890, 1350, 1364
MbiI CCGCTC 3 cut(s) 295, 1360, 1573
MboI GATC 5 cut(s) 338, 568, 888, 1348, 1362
MboII GAAGA 6 cut(s) 177, 532, 535, 1331, 1580, 1612
MfeI CAATTG 1 cut(s) 1326
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 2 cut(s) 1585, 1649
MluCI AATT 5 cut(s) 386, 442, 1300, 1326, 1651
MlyI GAGTC 6 cut(s) 191, 266, 889, 953, 1037, 1331
MmeI TCCRAC 1 cut(s) 441
MroXI GAANNNNTTC 1 cut(s) 633
MseI TTAA 5 cut(s) 441, 575, 1035, 1209, 1401
MslI CAYNNNNRTG 4 cut(s) 715, 1098, 1313, 1633
MspA1I CMGCKG 1 cut(s) 1087
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 4 cut(s) 190, 902, 921, 1110
MunI CAATTG 1 cut(s) 1326
MvaI CCWGG 4 cut(s) 190, 902, 921, 1110
MwoI GCNNNNNNNGC 7 cut(s) 55, 342, 680, 812, 1153, 1625, 1644
NdeII GATC 5 cut(s) 338, 568, 888, 1348, 1362
NlaIV GGNNCC 6 cut(s) 95, 108, 340, 408, 814, 1041
NmuCI GTSAC 2 cut(s) 261, 1231
NspI RCATGY 4 cut(s) 757, 802, 1156, 1416
PciI ACATGT 1 cut(s) 798
PciSI GCTCTTC 1 cut(s) 1563
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 4 cut(s) 413, 503, 634, 1250
PflMI CCANNNNNTGG 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 8 cut(s) 18, 134, 1060, 1063, 1076, 1146, 1270, 1536
PleI GAGTC 6 cut(s) 190, 266, 888, 953, 1036, 1330
PpsI GAGTC 6 cut(s) 190, 266, 888, 953, 1036, 1330
PpuMI RGGWCCY 1 cut(s) 407
PscI ACATGT 1 cut(s) 798
PshBI ATTAAT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 4 cut(s) 188, 900, 919, 1108
PspEI GGTNACC 1 cut(s) 1231
PspFI CCCAGC 3 cut(s) 111, 403, 1087
PspGI CCWGG 4 cut(s) 188, 900, 919, 1108
PspN4I GGNNCC 6 cut(s) 95, 108, 340, 408, 814, 1041
PspPI GGNCC 4 cut(s) 106, 407, 735, 926
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 1063
PstNI CAGNNNCTG 1 cut(s) 560
PsuI RGATCY 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 1087
RsaI GTAC 3 cut(s) 142, 374, 797
RsaNI GTAC 3 cut(s) 141, 373, 796
RseI CAYNNNNRTG 4 cut(s) 715, 1098, 1313, 1633
SapI GCTCTTC 1 cut(s) 1563
SaqAI TTAA 5 cut(s) 441, 575, 1035, 1209, 1401
SatI GCNGC 8 cut(s) 17, 133, 1059, 1062, 1075, 1145, 1269, 1535
Sau3AI GATC 5 cut(s) 338, 568, 888, 1348, 1362
Sau96I GGNCC 4 cut(s) 106, 407, 735, 926
SchI GAGTC 6 cut(s) 191, 266, 889, 953, 1037, 1331
ScrFI CCNGG 4 cut(s) 190, 902, 921, 1110
SduI GDGCHC 2 cut(s) 1585, 1649
SexAI ACCWGGT 1 cut(s) 919
SfaNI GCATC 6 cut(s) 17, 346, 692, 707, 920, 1102
SfcI CTRYAG 2 cut(s) 319, 1059
SinI GGWCC 4 cut(s) 106, 407, 735, 926
SmiMI CAYNNNNRTG 4 cut(s) 715, 1098, 1313, 1633
SpeI ACTAGT 1 cut(s) 667
Sse9I AATT 5 cut(s) 386, 442, 1300, 1326, 1651
SsiI CCGC 4 cut(s) 295, 336, 1360, 1573
SspI AATATT 1 cut(s) 997
SspMI CTAG 4 cut(s) 246, 668, 1389, 1538
StyD4I CCNGG 4 cut(s) 188, 900, 919, 1108
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 1083
TaqI TCGA 3 cut(s) 11, 1105, 1561
TaqII GACCGA 1 cut(s) 860
TasI AATT 5 cut(s) 386, 442, 1300, 1326, 1651
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 4 cut(s) 413, 503, 634, 1250
Tru1I TTAA 5 cut(s) 441, 575, 1035, 1209, 1401
Tru9I TTAA 5 cut(s) 441, 575, 1035, 1209, 1401
TscAI CASTG 4 cut(s) 717, 890, 1270, 1385
TseFI GTSAC 2 cut(s) 261, 1231
TseI GCWGC 8 cut(s) 16, 132, 1058, 1061, 1074, 1144, 1268, 1534
Tsp45I GTSAC 2 cut(s) 261, 1231
TspDTI ATGAA 5 cut(s) 270, 605, 845, 1043, 1129
TspGWI ACGGA 3 cut(s) 276, 691, 929
TspRI CASTG 4 cut(s) 717, 890, 1270, 1385
Van91I CCANNNNNTGG 1 cut(s) 103
VpaK11BI GGWCC 4 cut(s) 106, 407, 735, 926
VspI ATTAAT 1 cut(s) 441
XceI RCATGY 4 cut(s) 757, 802, 1156, 1416
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 4 cut(s) 246, 668, 1389, 1538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.