Rmu_co8517349.1_g000001

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8517349.1
Physical Location & Seq
Reverse (-)
843 .. 2417
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8517349.1_g000001.1.cds

Sequence Viewer

Length: 1575 bp
atgcgagcaacagagagacatggaagtgtttctcacagatttggtgagcagccagttgaagagccagagtcctatggtttcccaccgatgcacaatgtcgtcatccaaggaacacatctgtcagctcatagcttagatcagtatgagtcatcctcagcaaccagtaattaccatgttcaaagttctccatctagtttaagtttctcagcaaatggaagtccgacatcacagccagatttgcagtctaaccagtctagtgggtctccaattaaccagtctagcttaacaaacgacggtggtggcctgagccacaagataagggaattggaaagtgttttgcttggaaatgagtcagatgtccttgacatatatggcatcacaagtcaggttaggcataaccaagtttcgtcagaagagcagaactggaaacaaatgatggagatgatctccagaggtgacttgaaagaggtgctttgtgcttgtgctaaagcattggcagaaaatgatatgtcaacaactgaatggttgatgtcaaatttacgtcagatggtatcagtttcaggcgagccaatccaacgtttaggagcttacatgttggaaggtcttgttgcaaggttggcctctacagggagttgcatctatgcatcattaagatgcaaagagcctgctagtgctgaactcctatcatacatgcacatactatatgaagtctgcccatacttcaagtttgggtacatgtcagccaacggggcgattgcagaagccatgaaggatgaaagtagagttcatataattgattttcagattgctcaaggcagccagtggatcaccttgatccaggctttagctactcggcctggagggcctccacatattaggctgacggggatagatgattctgcatcagcttatgcacggggagggggacttgctcttgtgggaaagaggttgtcaaggcttgcagagtcatataaggtaccctttgagttccatgctgctggaatttctgcttctgaggttcagcttgaggaccttggagttcaaacaggtgaggcacttgcagtgaattttgccttcatgctgcaccacatgccagatgagagtgtgagcatccaaaatcctagggaccggctgttgagggtggttaagagcttgtctcccaaggttgtgactcttgttgagcaagaatcaaacaccaacacagccccattctgtccccgttttgctgagacattcagctactttagcgctgttttcgattcaattgatgtggctttgccaagggaacacaaagagcggatcaatgttgagcagcactgtctggcacgagaaattgttaacattatagcttgtgaaggggtcgaaagagtagaacgtaccgagcttctcagcaagtggaggtcacgatttattatggcagggttttcaccttatccgcttagctccataataaatgccactatcaagaccctactgcagagctattctgagaagtacacacttgaagaaagagatggagccttatatctcggctggatgaatcaagctcttgttacctcctgtgcatggaggtaa

Protein Analysis

524

Amino Acids

57.9

Weight (kDa)

5.57

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 976
AccB1I GGYRCC 1 cut(s) 976
AccBSI CCGCTC 1 cut(s) 1297
AciI CCGC 2 cut(s) 1297, 1436
AclI AACGTT 1 cut(s) 577
AclWI GGATC 3 cut(s) 829, 833, 1307
AcsI RAATTY 3 cut(s) 535, 1002, 1066
AfaI GTAC 4 cut(s) 734, 978, 1378, 1496
AfeI AGCGCT 1 cut(s) 1249
AfiI CCNNNNNNNGG 2 cut(s) 627, 1566
AflIII ACRYGT 2 cut(s) 591, 735
AgsI TTSAA 7 cut(s) 59, 179, 463, 724, 1043, 1263, 1505
AjnI CCWGG 2 cut(s) 837, 856
Alw26I GTCTC 4 cut(s) 10, 267, 1161, 1223
AlwI GGATC 3 cut(s) 829, 833, 1307
Aor51HI AGCGCT 1 cut(s) 1249
AoxI GGCC 4 cut(s) 301, 618, 854, 863
ApeKI GCWGC 5 cut(s) 49, 816, 995, 1081, 1312
ApoI RAATTY 3 cut(s) 535, 1002, 1066
Asp700I GAANNNNTTC 1 cut(s) 28
Asp718I GGTACC 1 cut(s) 976
AspA2I CCTAGG 1 cut(s) 1121
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 3 cut(s) 863, 1030, 1126
AsuHPI GGTGA 5 cut(s) 56, 467, 820, 1061, 1419
AvaII GGWCC 2 cut(s) 1030, 1126
AvrII CCTAGG 1 cut(s) 1121
BanI GGYRCC 1 cut(s) 976
BauI CACGAG 1 cut(s) 1326
BbvCI CCTCAGC 1 cut(s) 154
BbvI GCAGC 5 cut(s) 61, 828, 982, 1068, 1324
BccI CCATC 4 cut(s) 196, 430, 541, 1508
BciT130I CCWGG 2 cut(s) 839, 858
BcoDI GTCTC 4 cut(s) 10, 267, 1161, 1223
BfaI CTAG 5 cut(s) 192, 255, 279, 669, 1122
BfmI CTRYAG 2 cut(s) 624, 1475
BfoI RGCGCY 1 cut(s) 1251
BglI GCCNNNNNGGC 2 cut(s) 749, 862
BisI GCNGC 5 cut(s) 50, 817, 996, 1082, 1313
BlnI CCTAGG 1 cut(s) 1121
BlpI GCTNAGC 1 cut(s) 1439
BlsI GCNGC 5 cut(s) 51, 818, 997, 1083, 1314
Bme1390I CCNGG 2 cut(s) 839, 858
Bme18I GGWCC 2 cut(s) 1030, 1126
BmgT120I GGNCC 3 cut(s) 863, 1030, 1126
BmiI GGNNCC 3 cut(s) 978, 1127, 1519
BmrFI CCNGG 2 cut(s) 839, 858
BmsI GCATC 7 cut(s) 78, 384, 644, 645, 653, 911, 1119
BplI GAGNNNNNCTC 6 cut(s) 137, 169, 431, 463, 1141, 1173
BpmI CTGGAG 2 cut(s) 433, 879
Bpu10I CCTNAGC 2 cut(s) 154, 305
Bpu1102I GCTNAGC 1 cut(s) 1439
BpuEI CTTGAG 2 cut(s) 795, 1046
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 5 cut(s) 106, 1033, 1121, 1161, 1280
Bsc4I CCNNNNNNNGG 2 cut(s) 627, 1566
Bse118I RCCGGY 1 cut(s) 1128
Bse1I ACTGG 6 cut(s) 53, 162, 250, 274, 428, 820
BseBI CCWGG 2 cut(s) 839, 858
BseDI CCNNGG 5 cut(s) 106, 1033, 1121, 1161, 1280
BseGI GGATG 5 cut(s) 102, 149, 778, 1110, 1542
BseLI CCNNNNNNNGG 2 cut(s) 627, 1566
BseMII CTCAG 7 cut(s) 168, 219, 296, 1005, 1218, 1402, 1479
BseNI ACTGG 6 cut(s) 53, 162, 250, 274, 428, 820
BseXI GCAGC 5 cut(s) 61, 828, 982, 1068, 1324
BsgI GTGCAG 1 cut(s) 1067
BshFI GGCC 4 cut(s) 303, 620, 856, 865
BshNI GGYRCC 1 cut(s) 976
BsiSI CCGG 1 cut(s) 1129
BslFI GGGAC 3 cut(s) 939, 1139, 1200
BslI CCNNNNNNNGG 2 cut(s) 627, 1566
BsmAI GTCTC 4 cut(s) 10, 267, 1161, 1223
BsmFI GGGAC 3 cut(s) 939, 1139, 1200
BsnI GGCC 4 cut(s) 303, 620, 856, 865
Bso31I GGTCTC 1 cut(s) 267
Bsp143I GATC 5 cut(s) 136, 444, 825, 834, 1299
Bsp1720I GCTNAGC 1 cut(s) 1439
BspACI CCGC 2 cut(s) 1297, 1436
BspANI GGCC 4 cut(s) 303, 620, 856, 865
BspCNI CTCAG 7 cut(s) 167, 218, 297, 1006, 1219, 1401, 1480
BspLI GGNNCC 3 cut(s) 978, 1127, 1519
BspMAI CTGCAG 1 cut(s) 1479
BspPI GGATC 3 cut(s) 829, 833, 1307
BspQI GCTCTTC 2 cut(s) 54, 408
BspT107I GGYRCC 1 cut(s) 976
BspTNI GGTCTC 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 1297
BsrFI RCCGGY 1 cut(s) 1128
BsrI ACTGG 6 cut(s) 53, 162, 250, 274, 428, 820
BssAI RCCGGY 1 cut(s) 1128
BssECI CCNNGG 5 cut(s) 106, 1033, 1121, 1161, 1280
BssMI GATC 5 cut(s) 136, 444, 825, 834, 1299
BssSI CACGAG 1 cut(s) 1326
BssT1I CCWWGG 5 cut(s) 106, 1033, 1121, 1161, 1280
Bst2BI CACGAG 1 cut(s) 1326
Bst2UI CCWGG 2 cut(s) 839, 858
Bst4CI ACNGT 2 cut(s) 296, 1319
Bst6I CTCTTC 2 cut(s) 54, 408
BstAPI GCANNNNNTGC 1 cut(s) 1090
BstC8I GCNNGC 4 cut(s) 6, 566, 666, 960
BstDEI CTNAG 9 cut(s) 133, 154, 205, 305, 1014, 1227, 1388, 1439, 1488
BstF5I GGATG 5 cut(s) 102, 149, 778, 1110, 1542
BstH2I RGCGCY 1 cut(s) 1251
BstHHI GCGC 1 cut(s) 1250
BstKTI GATC 5 cut(s) 139, 447, 828, 837, 1302
BstMAI GTCTC 4 cut(s) 10, 267, 1161, 1223
BstMBI GATC 5 cut(s) 136, 444, 825, 834, 1299
BstMWI GCNNNNNNNGC 6 cut(s) 238, 617, 749, 862, 1090, 1245
BstNI CCWGG 2 cut(s) 839, 858
BstNSI RCATGY 4 cut(s) 595, 694, 739, 1093
BstSCI CCNGG 2 cut(s) 837, 856
BstSFI CTRYAG 2 cut(s) 624, 1475
BstV1I GCAGC 5 cut(s) 61, 828, 982, 1068, 1324
BstXI CCANNNNNNTGG 2 cut(s) 257, 998
BsuRI GGCC 4 cut(s) 303, 620, 856, 865
BtsCI GGATG 5 cut(s) 102, 149, 778, 1110, 1542
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 3 cut(s) 827, 1068, 1315
Cac8I GCNNGC 4 cut(s) 6, 566, 666, 960
CfoI GCGC 1 cut(s) 1250
Cfr10I RCCGGY 1 cut(s) 1128
Cfr13I GGNCC 3 cut(s) 863, 1030, 1126
Csp6I GTAC 4 cut(s) 733, 977, 1377, 1495
CspCI CAANNNNNGTGG 2 cut(s) 1251, 1286
CviQI GTAC 4 cut(s) 733, 977, 1377, 1495
DdeI CTNAG 9 cut(s) 133, 154, 205, 305, 1014, 1227, 1388, 1439, 1488
DpnI GATC 5 cut(s) 138, 446, 827, 836, 1301
DpnII GATC 5 cut(s) 136, 444, 825, 834, 1299
Eam1104I CTCTTC 2 cut(s) 54, 408
EarI CTCTTC 2 cut(s) 54, 408
Eco130I CCWWGG 5 cut(s) 106, 1033, 1121, 1161, 1280
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 1030, 1126
Eco47III AGCGCT 1 cut(s) 1249
EcoO109I RGGNCCY 2 cut(s) 863, 1030
EcoRII CCWGG 2 cut(s) 837, 856
EcoT14I CCWWGG 5 cut(s) 106, 1033, 1121, 1161, 1280
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 5 cut(s) 106, 1033, 1121, 1161, 1280
FalI AAGNNNNNCTT 4 cut(s) 456, 488, 965, 997
FaqI GGGAC 3 cut(s) 939, 1139, 1200
Fnu4HI GCNGC 5 cut(s) 50, 817, 996, 1082, 1313
FokI GGATG 5 cut(s) 89, 136, 785, 1097, 1549
Fsp4HI GCNGC 5 cut(s) 50, 817, 996, 1082, 1313
FspBI CTAG 5 cut(s) 192, 255, 279, 669, 1122
GlaI GCGC 1 cut(s) 1249
GluI GCNGC 5 cut(s) 50, 817, 996, 1082, 1313
GsuI CTGGAG 2 cut(s) 433, 879
HaeII RGCGCY 1 cut(s) 1251
HaeIII GGCC 4 cut(s) 303, 620, 856, 865
HapII CCGG 1 cut(s) 1129
HhaI GCGC 1 cut(s) 1250
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HincII GTYRAC 2 cut(s) 513, 1339
HindII GTYRAC 2 cut(s) 513, 1339
HinfI GANTC 9 cut(s) 68, 146, 350, 896, 965, 1171, 1187, 1259, 1540
HpaI GTTAAC 1 cut(s) 1339
HpaII CCGG 1 cut(s) 1129
HphI GGTGA 5 cut(s) 56, 467, 820, 1061, 1419
Hpy166II GTNNAC 3 cut(s) 513, 1339, 1497
Hpy188I TCNGA 7 cut(s) 222, 355, 412, 546, 804, 1015, 1489
Hpy188III TCNNGA 3 cut(s) 450, 1404, 1465
Hpy8I GTNNAC 3 cut(s) 513, 1339, 1497
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 4 cut(s) 593, 763, 1084, 1349
HpyCH4III ACNGT 2 cut(s) 296, 1319
HpyCH4IV ACGT 3 cut(s) 541, 577, 1375
HpyF10VI GCNNNNNNNGC 6 cut(s) 238, 617, 749, 862, 1090, 1245
HpyF3I CTNAG 9 cut(s) 133, 154, 205, 305, 1014, 1227, 1388, 1439, 1488
HpySE526I ACGT 3 cut(s) 541, 577, 1375
HspAI GCGC 1 cut(s) 1248
KpnI GGTACC 1 cut(s) 980
KspAI GTTAAC 1 cut(s) 1339
Kzo9I GATC 5 cut(s) 136, 444, 825, 834, 1299
LguI GCTCTTC 2 cut(s) 54, 408
LmnI GCTCC 3 cut(s) 584, 1448, 1517
Lsp1109I GCAGC 5 cut(s) 61, 828, 982, 1068, 1324
LweI GCATC 7 cut(s) 78, 384, 644, 645, 653, 911, 1119
MaeI CTAG 5 cut(s) 192, 255, 279, 669, 1122
MaeII ACGT 3 cut(s) 541, 577, 1375
MaeIII GTNAC 4 cut(s) 455, 1168, 1401, 1552
MalI GATC 5 cut(s) 138, 446, 827, 836, 1301
MbiI CCGCTC 1 cut(s) 1297
MboI GATC 5 cut(s) 136, 444, 825, 834, 1299
MboII GAAGA 3 cut(s) 71, 425, 1517
MfeI CAATTG 1 cut(s) 1263
MluCI AATT 9 cut(s) 166, 267, 323, 535, 792, 1002, 1066, 1263, 1332
MlyI GAGTC 5 cut(s) 77, 155, 359, 974, 1165
MmeI TCCRAC 3 cut(s) 245, 576, 598
Mph1103I ATGCAT 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 6 cut(s) 197, 270, 284, 650, 1146, 1338
MslI CAYNNNNRTG 2 cut(s) 24, 652
MspI CCGG 1 cut(s) 1129
MspR9I CCNGG 2 cut(s) 839, 858
MunI CAATTG 1 cut(s) 1263
MvaI CCWGG 2 cut(s) 839, 858
MwoI GCNNNNNNNGC 6 cut(s) 238, 617, 749, 862, 1090, 1245
NdeII GATC 5 cut(s) 136, 444, 825, 834, 1299
NlaIV GGNNCC 3 cut(s) 978, 1127, 1519
NmeAIII GCCGAG 2 cut(s) 832, 1509
NmuCI GTSAC 3 cut(s) 455, 1168, 1401
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 4 cut(s) 595, 694, 739, 1093
PciI ACATGT 2 cut(s) 591, 735
PciSI GCTCTTC 2 cut(s) 54, 408
PdmI GAANNNNTTC 1 cut(s) 28
PfeI GAWTC 4 cut(s) 896, 1187, 1259, 1540
PkrI GCNGC 5 cut(s) 51, 818, 997, 1083, 1314
PleI GAGTC 5 cut(s) 76, 154, 358, 973, 1165
PpsI GAGTC 5 cut(s) 76, 154, 358, 973, 1165
PpuMI RGGWCCY 1 cut(s) 1030
PscI ACATGT 2 cut(s) 591, 735
Psp1406I AACGTT 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 1030
Psp6I CCWGG 2 cut(s) 837, 856
PspGI CCWGG 2 cut(s) 837, 856
PspN4I GGNNCC 3 cut(s) 978, 1127, 1519
PspPI GGNCC 3 cut(s) 863, 1030, 1126
PspPPI RGGWCCY 1 cut(s) 1030
PstI CTGCAG 1 cut(s) 1479
RsaI GTAC 4 cut(s) 734, 978, 1378, 1496
RsaNI GTAC 4 cut(s) 733, 977, 1377, 1495
RseI CAYNNNNRTG 2 cut(s) 24, 652
SapI GCTCTTC 2 cut(s) 54, 408
SaqAI TTAA 6 cut(s) 197, 270, 284, 650, 1146, 1338
SatI GCNGC 5 cut(s) 50, 817, 996, 1082, 1313
Sau3AI GATC 5 cut(s) 136, 444, 825, 834, 1299
Sau96I GGNCC 3 cut(s) 863, 1030, 1126
SchI GAGTC 5 cut(s) 77, 155, 359, 974, 1165
ScrFI CCNGG 2 cut(s) 839, 858
SfaNI GCATC 7 cut(s) 78, 384, 644, 645, 653, 911, 1119
SfcI CTRYAG 2 cut(s) 624, 1475
SfiI GGCCNNNNNGGCC 1 cut(s) 862
SinI GGWCC 2 cut(s) 1030, 1126
SmiMI CAYNNNNRTG 2 cut(s) 24, 652
SmlI CTYRAG 2 cut(s) 810, 1025
SmoI CTYRAG 2 cut(s) 810, 1025
Sse9I AATT 9 cut(s) 166, 267, 323, 535, 792, 1002, 1066, 1263, 1332
SsiI CCGC 2 cut(s) 1297, 1436
SspMI CTAG 5 cut(s) 192, 255, 279, 669, 1122
StyD4I CCNGG 2 cut(s) 837, 856
StyI CCWWGG 5 cut(s) 106, 1033, 1121, 1161, 1280
TaaI ACNGT 2 cut(s) 296, 1319
TaiI ACGT 3 cut(s) 544, 580, 1378
TaqI TCGA 2 cut(s) 1257, 1362
TasI AATT 9 cut(s) 166, 267, 323, 535, 792, 1002, 1066, 1263, 1332
TatI WGTACW 1 cut(s) 1494
TfiI GAWTC 4 cut(s) 896, 1187, 1259, 1540
Tru1I TTAA 6 cut(s) 197, 270, 284, 650, 1146, 1338
Tru9I TTAA 6 cut(s) 197, 270, 284, 650, 1146, 1338
TscAI CASTG 3 cut(s) 827, 1068, 1322
TseFI GTSAC 3 cut(s) 455, 1168, 1401
TseI GCWGC 5 cut(s) 49, 816, 995, 1081, 1312
Tsp45I GTSAC 3 cut(s) 455, 1168, 1401
TspDTI ATGAA 6 cut(s) 720, 776, 782, 789, 1066, 1553
TspRI CASTG 3 cut(s) 827, 1068, 1322
VpaK11BI GGWCC 2 cut(s) 1030, 1126
XapI RAATTY 3 cut(s) 535, 1002, 1066
XceI RCATGY 4 cut(s) 595, 694, 739, 1093
XmaJI CCTAGG 1 cut(s) 1121
XmnI GAANNNNTTC 1 cut(s) 28
XspI CTAG 5 cut(s) 192, 255, 279, 669, 1122
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.