AT5G48150

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
19522238 .. 19524788
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48150.3

Sequence Viewer

Length: 1473 bp
ATGTACAAGCAGCCTAGACAAGAGCTTGAGGCTTATTATTTTGAGCCTAACTCTGTTGAGAAGCTTAGGTACTTACCGGTTAACAACTCTCGTAAACGGTTTTGTACGCTCGAGCCATTTCCTGACTCTCCTCCTTATAATGCTCTATCTACTGCTACATATGATGATACATGTGGCTCTTGTGTAACGGATGAGTTGAATGACTTCAAACACAAGATTAGGGAAATCGAAACGGTGATGATGGGGCCGGACTCGTTGGACTTACTTGTCGATTGCACGGACTCATTTGATTCCACGGCGAGTCAAGAGATTAATGGTTGGAGATCAACTCTAGAGGCTATCTCGAGGCGGGATTTAAGAGCTGATCTTGTTTCATGTGCCAAAGCTATGTCGGAAAATGATCTTATGATGGCTCATTCAATGATGGAGAAGTTGCGGCAGATGGTTTCGGTTTCTGGTGAGCCTATTCAACGGTTGGGAGCTTACTTATTGGAAGGTCTAGTGGCGCAGCTAGCTTCGTCGGGCAGTTCTATATACAAAGCACTTAATAGGTGTCCTGAACCGGCTAGCACAGAGCTTCTCTCTTACATGCACATTCTCTATGAGGTTTGTCCTTACTTCAAGTTTGGATACATGTCAGCAAATGGTGCTATTGCTGAGGCAATGAAGGAAGAAAACAGAGTTCACATTATTGATTTCCAAATCGGTCAAGGGAGTCAATGGGTCACTCTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGCCTCCGCGGATTCGGATAACGGGTATCGATGATATGACTTCAGCGTATGCTCGTGGAGGTGGCCTAAGCATTGTTGGAAATAGACTCGCTAAGCTTGCTAAGCAGTTCAACGTTCCATTCGAGTTTAACTCGGTATCGGTGTCAGTTTCCGAGGTTAAACCTAAAAACCTCGGGGTTCGACCTGGGGAAGCTCTAGCCGTAAACTTTGCCTTTGTGCTTCATCATATGCCAGACGAAAGCGTGAGCACCGAGAATCACCGCGACCGGTTATTGAGAATGGTGAAGAGCTTATCTCCCAAGGTGGTGACTCTTGTGGAACAAGAGTCAAACACAAACACAGCCGCTTTCTTCCCGAGGTTCATGGAGACAATGAACTACTATGCCGCGATGTTTGAGTCAATTGATGTGACTCTACCAAGAGATCACAAACAGAGGATTAATGTGGAGCAACATTGTCTAGCAAGAGATGTCGTGAACATCATCGCATGTGAAGGAGCTGATCGGGTGGAGCGACACGAGCTCCTAGGAAAATGGAGGTCACGGTTTGGGATGGCGGGTTTCACTCCTTACCCGTTGAGTCCCTTGGTGAATTCAACCATTAAAAGTCTGCTTAGGAACTACTCAGACAAGTACAGGCTAGAAGAAAGAGATGGAGCTTTGTATCTTGGTTGGATGCATCGAGATTTGGTTGCCTCGTGTGCTTGGAAATGA

Protein Analysis

490

Amino Acids

55.29

Weight (kDa)

6.17

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 120 - 490 8.7e-146 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AasI GACNNNNNNGTC 1 cut(s) 266
AccII CGCG 3 cut(s) 769, 1023, 1148
AciI CCGC 8 cut(s) 349, 436, 767, 769, 1021, 1104, 1146, 1316
AclI AACGTT 1 cut(s) 873
AcsI RAATTY 1 cut(s) 1351
AcuI CTGAAG 1 cut(s) 786
AfaI GTAC 4 cut(s) 5, 71, 106, 1394
AflIII ACRYGT 2 cut(s) 170, 633
AgeI ACCGGT 2 cut(s) 76, 1026
AgsI TTSAA 7 cut(s) 199, 208, 420, 470, 622, 871, 1356
AjnI CCWGG 3 cut(s) 735, 754, 943
Alw21I GWGCWC 2 cut(s) 1010, 1284
Alw26I GTCTC 1 cut(s) 1121
Ama87I CYCGRG 4 cut(s) 110, 343, 932, 1114
AoxI GGCC 4 cut(s) 245, 752, 761, 823
ApeKI GCWGC 3 cut(s) 10, 508, 746
ApoI RAATTY 1 cut(s) 1351
AseI ATTAAT 2 cut(s) 312, 1200
AsiGI ACCGGT 2 cut(s) 76, 1026
Asp700I GAANNNNTTC 1 cut(s) 203
AspA2I CCTAGG 1 cut(s) 1285
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 245, 761
AsuHPI GGTGA 6 cut(s) 247, 470, 1010, 1054, 1078, 1360
AsuNHI GCTAGC 2 cut(s) 511, 566
AvaI CYCGRG 4 cut(s) 110, 343, 932, 1114
AvrII CCTAGG 1 cut(s) 1285
BanII GRGCYC 1 cut(s) 1284
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BauI CACGAG 3 cut(s) 813, 1277, 1456
Bbv12I GWGCWC 2 cut(s) 1010, 1284
BbvCI CCTCAGC 1 cut(s) 657
BbvI GCAGC 3 cut(s) 22, 520, 758
BccI CCATC 6 cut(s) 235, 403, 418, 436, 1306, 1406
BceAI ACGGC 2 cut(s) 312, 944
BciT130I CCWGG 3 cut(s) 737, 756, 945
BciVI GTATCC 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 1121
BfuI GTATCC 1 cut(s) 623
BglI GCCNNNNNGGC 1 cut(s) 760
BisI GCNGC 6 cut(s) 11, 437, 509, 747, 1104, 1146
BlnI CCTAGG 1 cut(s) 1285
BlpI GCTNAGC 2 cut(s) 852, 861
BlsI GCNGC 6 cut(s) 12, 438, 510, 748, 1105, 1147
Bme1390I CCNGG 3 cut(s) 737, 756, 945
BmeT110I CYCGRG 4 cut(s) 110, 343, 932, 1114
BmgT120I GGNCC 2 cut(s) 245, 761
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 737, 756, 945
BmsI GCATC 2 cut(s) 1425, 1447
BmtI GCTAGC 2 cut(s) 515, 570
Bpu10I CCTNAGC 4 cut(s) 65, 657, 827, 1373
Bpu1102I GCTNAGC 2 cut(s) 852, 861
BpuEI CTTGAG 1 cut(s) 47
Bsa29I ATCGAT 1 cut(s) 789
BsaJI CCNNGG 9 cut(s) 294, 767, 912, 931, 944, 1059, 1115, 1285, 1344
BsaWI WCCGGW 2 cut(s) 76, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 1266, 1296
Bse118I RCCGGY 3 cut(s) 76, 562, 1026
Bse3DI GCAATG 1 cut(s) 669
BseBI CCWGG 3 cut(s) 737, 756, 945
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 9 cut(s) 294, 767, 912, 931, 944, 1059, 1115, 1285, 1344
BseGI GGATG 3 cut(s) 196, 1317, 1440
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 2 cut(s) 648, 1398
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 22, 520, 758
Bsh1236I CGCG 3 cut(s) 769, 1023, 1148
Bsh1285I CGRYCG 1 cut(s) 1027
BshFI GGCC 4 cut(s) 247, 754, 763, 825
BshTI ACCGGT 2 cut(s) 76, 1026
BshVI ATCGAT 1 cut(s) 789
BsiEI CGRYCG 1 cut(s) 1027
BsiHKAI GWGCWC 2 cut(s) 1010, 1284
BsiHKCI CYCGRG 4 cut(s) 110, 343, 932, 1114
BsiSI CCGG 4 cut(s) 77, 248, 563, 1027
BslFI GGGAC 1 cut(s) 1326
BsmAI GTCTC 1 cut(s) 1121
BsmFI GGGAC 1 cut(s) 1326
BsnI GGCC 4 cut(s) 247, 754, 763, 825
BsoBI CYCGRG 4 cut(s) 110, 343, 932, 1114
Bsp1286I GDGCHC 2 cut(s) 1010, 1284
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 323, 364, 400, 1183, 1261
Bsp1720I GCTNAGC 2 cut(s) 852, 861
BspACI CCGC 8 cut(s) 349, 436, 767, 769, 1021, 1104, 1146, 1316
BspANI GGCC 4 cut(s) 247, 754, 763, 825
BspCNI CTCAG 2 cut(s) 649, 1397
BspDI ATCGAT 1 cut(s) 789
BspFNI CGCG 3 cut(s) 769, 1023, 1148
BspLI GGNNCC 1 cut(s) 246
BspOI GCTAGC 2 cut(s) 515, 570
BspQI GCTCTTC 1 cut(s) 1040
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 3 cut(s) 76, 562, 1026
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 3 cut(s) 76, 562, 1026
BssECI CCNNGG 9 cut(s) 294, 767, 912, 931, 944, 1059, 1115, 1285, 1344
BssMI GATC 5 cut(s) 323, 364, 400, 1183, 1261
BssSI CACGAG 3 cut(s) 813, 1277, 1456
BssT1I CCWWGG 3 cut(s) 1059, 1285, 1344
Bst2BI CACGAG 3 cut(s) 813, 1277, 1456
Bst2UI CCWGG 3 cut(s) 737, 756, 945
Bst4CI ACNGT 4 cut(s) 99, 235, 474, 1305
Bst6I CTCTTC 1 cut(s) 1040
BstAPI GCANNNNNTGC 1 cut(s) 647
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 3 cut(s) 513, 568, 858
BstDEI CTNAG 7 cut(s) 65, 657, 827, 852, 861, 1373, 1384
BstDSI CCRYGG 2 cut(s) 294, 767
BstF5I GGATG 3 cut(s) 196, 1317, 1440
BstFNI CGCG 3 cut(s) 769, 1023, 1148
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 5 cut(s) 326, 367, 403, 1186, 1264
BstMAI GTCTC 1 cut(s) 1121
BstMBI GATC 5 cut(s) 323, 364, 400, 1183, 1261
BstMCI CGRYCG 1 cut(s) 1027
BstMWI GCNNNNNNNGC 8 cut(s) 512, 647, 746, 760, 857, 862, 1279, 1460
BstNI CCWGG 3 cut(s) 737, 756, 945
BstNSI RCATGY 4 cut(s) 174, 592, 637, 1251
BstSCI CCNGG 3 cut(s) 735, 754, 943
BstUI CGCG 3 cut(s) 769, 1023, 1148
BstV1I GCAGC 3 cut(s) 22, 520, 758
Bsu15I ATCGAT 1 cut(s) 789
BsuI GTATCC 1 cut(s) 623
BsuRI GGCC 4 cut(s) 247, 754, 763, 825
BsuTUI ATCGAT 1 cut(s) 789
BtgI CCRYGG 2 cut(s) 294, 767
BtgZI GCGATG 2 cut(s) 1163, 1228
BtsCI GGATG 3 cut(s) 196, 1317, 1440
Cac8I GCNNGC 3 cut(s) 513, 568, 858
CfoI GCGC 1 cut(s) 508
Cfr10I RCCGGY 3 cut(s) 76, 562, 1026
Cfr13I GGNCC 2 cut(s) 245, 761
Cfr42I CCGCGG 1 cut(s) 770
ClaI ATCGAT 1 cut(s) 789
Csp6I GTAC 4 cut(s) 4, 70, 105, 1393
CspAI ACCGGT 2 cut(s) 76, 1026
CviAII CATG 6 cut(s) 171, 375, 589, 634, 1123, 1248
CviQI GTAC 4 cut(s) 4, 70, 105, 1393
DdeI CTNAG 7 cut(s) 65, 657, 827, 852, 861, 1373, 1384
DpnI GATC 5 cut(s) 325, 366, 402, 1185, 1263
DpnII GATC 5 cut(s) 323, 364, 400, 1183, 1261
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 1040
EarI CTCTTC 1 cut(s) 1040
Ecl136II GAGCTC 1 cut(s) 1282
Eco130I CCWWGG 3 cut(s) 1059, 1285, 1344
Eco147I AGGCCT 1 cut(s) 754
Eco24I GRGCYC 1 cut(s) 1284
Eco53kI GAGCTC 1 cut(s) 1282
Eco57I CTGAAG 1 cut(s) 786
Eco88I CYCGRG 4 cut(s) 110, 343, 932, 1114
EcoICRI GAGCTC 1 cut(s) 1282
EcoRI GAATTC 1 cut(s) 1351
EcoRII CCWGG 3 cut(s) 735, 754, 943
EcoT14I CCWWGG 3 cut(s) 1059, 1285, 1344
EcoT22I ATGCAT 1 cut(s) 1440
EcoT38I GRGCYC 1 cut(s) 1284
ErhI CCWWGG 3 cut(s) 1059, 1285, 1344
FaeI CATG 6 cut(s) 174, 378, 592, 637, 1126, 1251
FaqI GGGAC 1 cut(s) 1326
FatI CATG 6 cut(s) 170, 374, 588, 633, 1122, 1247
FauI CCCGC 2 cut(s) 342, 1309
FauNDI CATATG 2 cut(s) 160, 987
Fnu4HI GCNGC 6 cut(s) 11, 437, 509, 747, 1104, 1146
FokI GGATG 3 cut(s) 203, 1324, 1447
FriOI GRGCYC 1 cut(s) 1284
Fsp4HI GCNGC 6 cut(s) 11, 437, 509, 747, 1104, 1146
GlaI GCGC 1 cut(s) 507
GluI GCNGC 6 cut(s) 11, 437, 509, 747, 1104, 1146
HaeIII GGCC 4 cut(s) 247, 754, 763, 825
HapII CCGG 4 cut(s) 77, 248, 563, 1027
HhaI GCGC 1 cut(s) 508
Hin1II CATG 6 cut(s) 174, 378, 592, 637, 1126, 1251
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 2 cut(s) 62, 854
HpaI GTTAAC 1 cut(s) 82
HpaII CCGG 4 cut(s) 77, 248, 563, 1027
HphI GGTGA 6 cut(s) 247, 470, 1010, 1054, 1078, 1360
Hpy166II GTNNAC 5 cut(s) 82, 95, 685, 964, 1237
Hpy188I TCNGA 4 cut(s) 394, 777, 913, 1387
Hpy188III TCNNGA 8 cut(s) 122, 305, 332, 343, 557, 1114, 1234, 1442
Hpy8I GTNNAC 5 cut(s) 82, 95, 685, 964, 1237
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 3 cut(s) 488, 661, 1247
HpyCH4III ACNGT 4 cut(s) 99, 235, 474, 1305
HpyCH4IV ACGT 1 cut(s) 873
HpyCH4V TGCA 4 cut(s) 276, 592, 746, 1438
HpyF10VI GCNNNNNNNGC 8 cut(s) 512, 647, 746, 760, 857, 862, 1279, 1460
HpyF3I CTNAG 7 cut(s) 65, 657, 827, 852, 861, 1373, 1384
HpySE526I ACGT 1 cut(s) 873
Hsp92II CATG 6 cut(s) 174, 378, 592, 637, 1126, 1251
HspAI GCGC 1 cut(s) 506
KspAI GTTAAC 1 cut(s) 82
KspI CCGCGG 1 cut(s) 770
Kzo9I GATC 5 cut(s) 323, 364, 400, 1183, 1261
LguI GCTCTTC 1 cut(s) 1040
LmnI GCTCC 6 cut(s) 479, 1207, 1256, 1270, 1287, 1415
Lsp1109I GCAGC 3 cut(s) 22, 520, 758
LweI GCATC 2 cut(s) 1425, 1447
MaeII ACGT 1 cut(s) 873
MaeIII GTNAC 5 cut(s) 184, 724, 1066, 1168, 1299
MalI GATC 5 cut(s) 325, 366, 402, 1185, 1263
MboI GATC 5 cut(s) 323, 364, 400, 1183, 1261
MboII GAAGA 4 cut(s) 683, 1057, 1102, 1415
MfeI CAATTG 1 cut(s) 1161
MhlI GDGCHC 2 cut(s) 1010, 1284
MluCI AATT 2 cut(s) 1161, 1351
MmeI TCCRAC 5 cut(s) 237, 299, 372, 817, 1412
Mph1103I ATGCAT 1 cut(s) 1440
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 8 cut(s) 81, 312, 356, 546, 888, 918, 1200, 1362
MspA1I CMGCKG 1 cut(s) 769
MspI CCGG 4 cut(s) 77, 248, 563, 1027
MspR9I CCNGG 3 cut(s) 737, 756, 945
MunI CAATTG 1 cut(s) 1161
MvaI CCWGG 3 cut(s) 737, 756, 945
MvnI CGCG 3 cut(s) 769, 1023, 1148
MwoI GCNNNNNNNGC 8 cut(s) 512, 647, 746, 760, 857, 862, 1279, 1460
NdeI CATATG 2 cut(s) 160, 987
NdeII GATC 5 cut(s) 323, 364, 400, 1183, 1261
NheI GCTAGC 2 cut(s) 511, 566
NlaIII CATG 6 cut(s) 174, 378, 592, 637, 1126, 1251
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 4 cut(s) 724, 1066, 1168, 1299
NsiI ATGCAT 1 cut(s) 1440
NspI RCATGY 4 cut(s) 174, 592, 637, 1251
PaeR7I CTCGAG 2 cut(s) 110, 343
PceI AGGCCT 1 cut(s) 754
PciI ACATGT 2 cut(s) 170, 633
PciSI GCTCTTC 1 cut(s) 1040
PcsI WCGNNNNNNNCGW 2 cut(s) 879, 1270
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 3 cut(s) 290, 772, 1015
PinAI ACCGGT 2 cut(s) 76, 1026
PkrI GCNGC 6 cut(s) 12, 438, 510, 748, 1105, 1147
PscI ACATGT 2 cut(s) 170, 633
PshBI ATTAAT 2 cut(s) 312, 1200
PsiI TTATAA 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 1284
Psp1406I AACGTT 1 cut(s) 873
Psp6I CCWGG 3 cut(s) 735, 754, 943
PspGI CCWGG 3 cut(s) 735, 754, 943
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 245, 761
PspXI VCTCGAGB 1 cut(s) 110
RsaI GTAC 4 cut(s) 5, 71, 106, 1394
RsaNI GTAC 4 cut(s) 4, 70, 105, 1393
SacI GAGCTC 1 cut(s) 1284
SacII CCGCGG 1 cut(s) 770
SapI GCTCTTC 1 cut(s) 1040
SaqAI TTAA 8 cut(s) 81, 312, 356, 546, 888, 918, 1200, 1362
SatI GCNGC 6 cut(s) 11, 437, 509, 747, 1104, 1146
Sau3AI GATC 5 cut(s) 323, 364, 400, 1183, 1261
Sau96I GGNCC 2 cut(s) 245, 761
ScrFI CCNGG 3 cut(s) 737, 756, 945
SduI GDGCHC 2 cut(s) 1010, 1284
SfaNI GCATC 2 cut(s) 1425, 1447
SfiI GGCCNNNNNGGCC 1 cut(s) 760
Sfr274I CTCGAG 2 cut(s) 110, 343
Sfr303I CCGCGG 1 cut(s) 770
SgrBI CCGCGG 1 cut(s) 770
SlaI CTCGAG 2 cut(s) 110, 343
SmlI CTYRAG 3 cut(s) 26, 110, 343
SmoI CTYRAG 3 cut(s) 26, 110, 343
Sse9I AATT 2 cut(s) 1161, 1351
SseBI AGGCCT 1 cut(s) 754
SsiI CCGC 8 cut(s) 349, 436, 767, 769, 1021, 1104, 1146, 1316
SstI GAGCTC 1 cut(s) 1284
StuI AGGCCT 1 cut(s) 754
StyD4I CCNGG 3 cut(s) 735, 754, 943
StyI CCWWGG 3 cut(s) 1059, 1285, 1344
TaaI ACNGT 4 cut(s) 99, 235, 474, 1305
TaiI ACGT 1 cut(s) 876
TaqI TCGA 8 cut(s) 111, 228, 270, 344, 789, 882, 940, 1441
TaqII GACCGA 1 cut(s) 695
TasI AATT 2 cut(s) 1161, 1351
TatI WGTACW 2 cut(s) 3, 1392
TauI GCSGC 3 cut(s) 439, 1106, 1148
TfiI GAWTC 3 cut(s) 290, 772, 1015
Tru1I TTAA 8 cut(s) 81, 312, 356, 546, 888, 918, 1200, 1362
Tru9I TTAA 8 cut(s) 81, 312, 356, 546, 888, 918, 1200, 1362
TseFI GTSAC 4 cut(s) 724, 1066, 1168, 1299
TseI GCWGC 3 cut(s) 10, 508, 746
Tsp45I GTSAC 4 cut(s) 724, 1066, 1168, 1299
TspDTI ATGAA 5 cut(s) 363, 680, 971, 1111, 1148
TspGWI ACGGA 2 cut(s) 203, 293
VspI ATTAAT 2 cut(s) 312, 1200
XapI RAATTY 1 cut(s) 1351
XbaI TCTAGA 1 cut(s) 331
XceI RCATGY 4 cut(s) 174, 592, 637, 1251
XhoI CTCGAG 2 cut(s) 110, 343
XmaJI CCTAGG 1 cut(s) 1285
XmnI GAANNNNTTC 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 1440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.