AT2G04890

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
1720361 .. 1722604
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04890.1

Sequence Viewer

Length: 1242 bp
ATGGACAATGTAAGAGGTTCAATAATGTTGCAGCCACTGCCAGAGATAGCTGAGAGTATCGATGATGCTATCTGCCATGAACTCTCCATGTGGCCTGATGATGCTAAAGATTTGTTATTGATAGTGGAGGCAATATCAAGGGGAGACTTGAAGTTGGTACTTGTTGCTTGTGCAAAAGCTGTTTCTGAGAATAATCTTCTAATGGCACGATGGTGTATGGGTGAGTTGCGCGGTATGGTTTCGATTTCTGGTGAGCCAATCCAGAGATTGGGAGCTTATATGTTAGAAGGGCTTGTTGCTAGGCTTGCTGCTTCTGGTAGTTCGATATATAAGTCTCTCCAGTCCAGAGAACCAGAGAGTTATGAATTTTTATCTTATGTGTATGTTCTGCATGAGGTTTGTCCATATTTCAAGTTTGGATACATGTCAGCGAATGGTGCGATTGCAGAAGCAATGAAGGATGAAGAGAGGATTCACATTATTGACTTCCAAATTGGACAAGGGAGCCAGTGGATAGCACTTATCCAGGCTTTTGCAGCTAGGCCTGGTGGGGCTCCAAATATTCGAATTACCGGAGTTGGTGATGGATCTGTCTTGGTTACAGTCAAGAAGAGACTAGAGAAACTTGCAAAGAAGTTTGATGTTCCATTCAGGTTCAATGCGGTTTCAAGGCCAAGTTGTGAAGTTGAAGTGGAAAATCTTGATGTCCGAGATGGCGAAGCCCTTGGAGTGAACTTTGCTTACATGCTGCATCATTTGCCAGATGAGAGTGTAAGCATGGAAAACCACAGGGACCGGTTGCTGAGGATGGTGAAGAGTCTATCACCTAAAGTAGTCACTCTTGTGGAACAAGAATGCAACACGAACACTTCCCCTTTCCTTCCTAGGTTCCTTGAGACATTAAGTTATTACACGGCAATGTTCGAATCTATCGATGTTATGCTTCCGAGAAATCACAAGGAAAGGATCAATATCGAGCAGCACTGCATGGCAAGGGATGTCGTCAACATCATAGCTTGTGAAGGAGCCGAGAGGATCGAAAGACACGAGCTTCTCGGGAAATGGAAGTCAAGGTTTTCCATGGCGGGTTTTGAGCCATACCCCTTGAGCTCAATCATTTCAGCCACCATTAGAGCCCTCTTGAGAGATTACAGCAACGGGTATGCGATTGAAGAAAGAGATGGTGCTCTGTACCTTGGTTGGATGGACCGAATCTTGGTCTCATCTTGTGCATGGAAGTGA

Protein Analysis

413

Amino Acids

46.47

Weight (kDa)

5.53

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 52 - 413 3.1e-140 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 268
AccII CGCG 1 cut(s) 231
AciI CCGC 3 cut(s) 231, 662, 1085
AclWI GGATC 3 cut(s) 595, 974, 1043
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 159, 1193
AfiI CCNNNNNNNGG 2 cut(s) 268, 1216
AflIII ACRYGT 1 cut(s) 423
AgeI ACCGGT 1 cut(s) 795
AgsI TTSAA 7 cut(s) 21, 151, 412, 658, 669, 689, 1172
AjnI CCWGG 2 cut(s) 525, 544
AleI CACNNNNGTG 2 cut(s) 211, 842
AluBI AGCT 7 cut(s) 50, 179, 275, 539, 1016, 1051, 1110
AluI AGCT 7 cut(s) 50, 179, 275, 539, 1016, 1051, 1110
Alw21I GWGCWC 2 cut(s) 1112, 1189
Alw26I GTCTC 5 cut(s) 138, 339, 607, 890, 1225
AlwI GGATC 3 cut(s) 595, 974, 1043
AlwNI CAGNNNCTG 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 1055
AoxI GGCC 3 cut(s) 92, 542, 671
ApeKI GCWGC 5 cut(s) 31, 308, 536, 748, 979
ApoI RAATTY 1 cut(s) 365
AsiGI ACCGGT 1 cut(s) 795
AspA2I CCTAGG 1 cut(s) 884
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 793, 1207
AsuHPI GGTGA 5 cut(s) 233, 263, 593, 816, 823
AsuII TTCGAA 2 cut(s) 565, 924
AvaI CYCGRG 1 cut(s) 1055
AvaII GGWCC 2 cut(s) 793, 1207
AvrII CCTAGG 1 cut(s) 884
BanII GRGCYC 3 cut(s) 556, 1112, 1138
BauI CACGAG 1 cut(s) 1046
Bbv12I GWGCWC 2 cut(s) 1112, 1189
BbvCI CCTCAGC 1 cut(s) 803
BbvI GCAGC 5 cut(s) 43, 295, 548, 735, 991
BccI CCATC 6 cut(s) 204, 578, 707, 802, 1175, 1198
BceAI ACGGC 1 cut(s) 930
BciT130I CCWGG 2 cut(s) 527, 546
BciVI GTATCC 1 cut(s) 413
BcoDI GTCTC 5 cut(s) 138, 339, 607, 890, 1225
BfaI CTAG 4 cut(s) 300, 540, 617, 885
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 5 cut(s) 32, 309, 537, 749, 980
BlnI CCTAGG 1 cut(s) 884
BlsI GCNGC 5 cut(s) 33, 310, 538, 750, 981
Bme1390I CCNGG 2 cut(s) 527, 546
Bme18I GGWCC 2 cut(s) 793, 1207
BmeT110I CYCGRG 1 cut(s) 1055
BmgT120I GGNCC 2 cut(s) 793, 1207
BmiI GGNNCC 5 cut(s) 506, 555, 794, 890, 1027
BmrFI CCNGG 2 cut(s) 527, 546
BmsI GCATC 3 cut(s) 55, 91, 760
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 803
Bpu14I TTCGAA 2 cut(s) 565, 924
BpuEI CTTGAG 3 cut(s) 914, 1126, 1162
Bsa29I ATCGAT 2 cut(s) 60, 933
BsaBI GATNNNNATC 1 cut(s) 971
BsaI GGTCTC 1 cut(s) 1225
BsaJI CCNNGG 4 cut(s) 724, 884, 1080, 1195
BsaWI WCCGGW 2 cut(s) 572, 795
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 1216
Bse118I RCCGGY 1 cut(s) 795
Bse1I ACTGG 2 cut(s) 340, 508
Bse3DI GCAATG 2 cut(s) 459, 924
Bse8I GATNNNNATC 1 cut(s) 971
BseBI CCWGG 2 cut(s) 527, 546
BseCI ATCGAT 2 cut(s) 60, 933
BseDI CCNNGG 4 cut(s) 724, 884, 1080, 1195
BseGI GGATG 4 cut(s) 466, 813, 1003, 1209
BseJI GATNNNNATC 1 cut(s) 971
BseLI CCNNNNNNNGG 2 cut(s) 268, 1216
BseMI GCAATG 2 cut(s) 459, 924
BseMII CTCAG 3 cut(s) 42, 177, 794
BseNI ACTGG 2 cut(s) 340, 508
BseXI GCAGC 5 cut(s) 43, 295, 548, 735, 991
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 94, 544, 673
BshTI ACCGGT 1 cut(s) 795
BshVI ATCGAT 2 cut(s) 60, 933
BsiHKAI GWGCWC 2 cut(s) 1112, 1189
BsiHKCI CYCGRG 1 cut(s) 1055
BsiSI CCGG 2 cut(s) 573, 796
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 2 cut(s) 268, 1216
BsmAI GTCTC 5 cut(s) 138, 339, 607, 890, 1225
BsmFI GGGAC 1 cut(s) 806
BsmI GAATGC 1 cut(s) 860
BsnI GGCC 3 cut(s) 94, 544, 673
Bso31I GGTCTC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 1055
Bsp119I TTCGAA 2 cut(s) 565, 924
Bsp1286I GDGCHC 4 cut(s) 556, 1112, 1138, 1189
Bsp143I GATC 3 cut(s) 587, 966, 1035
Bsp19I CCATGG 1 cut(s) 1080
BspACI CCGC 3 cut(s) 231, 662, 1085
BspANI GGCC 3 cut(s) 94, 544, 673
BspCNI CTCAG 3 cut(s) 43, 178, 795
BspDI ATCGAT 2 cut(s) 60, 933
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 5 cut(s) 506, 555, 794, 890, 1027
BspPI GGATC 3 cut(s) 595, 974, 1043
BspT104I TTCGAA 2 cut(s) 565, 924
BspTNI GGTCTC 1 cut(s) 1225
BsrDI GCAATG 2 cut(s) 459, 924
BsrFI RCCGGY 1 cut(s) 795
BsrI ACTGG 2 cut(s) 340, 508
BssAI RCCGGY 1 cut(s) 795
BssECI CCNNGG 4 cut(s) 724, 884, 1080, 1195
BssMI GATC 3 cut(s) 587, 966, 1035
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 4 cut(s) 724, 884, 1080, 1195
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 2 cut(s) 527, 546
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 3 cut(s) 459, 605, 809
BstAPI GCANNNNNTGC 2 cut(s) 37, 757
BstBI TTCGAA 2 cut(s) 565, 924
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 51, 186, 803
BstDSI CCRYGG 1 cut(s) 1080
BstF5I GGATG 4 cut(s) 466, 813, 1003, 1209
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 3 cut(s) 590, 969, 1038
BstMAI GTCTC 5 cut(s) 138, 339, 607, 890, 1225
BstMBI GATC 3 cut(s) 587, 966, 1035
BstMWI GCNNNNNNNGC 5 cut(s) 37, 305, 437, 536, 757
BstNI CCWGG 2 cut(s) 527, 546
BstNSI RCATGY 2 cut(s) 427, 748
BstSCI CCNGG 2 cut(s) 525, 544
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 5 cut(s) 43, 295, 548, 735, 991
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
Bsu15I ATCGAT 2 cut(s) 60, 933
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 94, 544, 673
BsuTUI ATCGAT 2 cut(s) 60, 933
BtgI CCRYGG 1 cut(s) 1080
BtsCI GGATG 4 cut(s) 466, 813, 1003, 1209
BtsI GCAGTG 2 cut(s) 35, 982
BtsIMutI CAGTG 3 cut(s) 35, 515, 982
Cac8I GCNNGC 1 cut(s) 306
CaiI CAGNNNCTG 1 cut(s) 37
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 793, 1207
ClaI ATCGAT 2 cut(s) 60, 933
Csp6I GTAC 2 cut(s) 158, 1192
CspAI ACCGGT 1 cut(s) 795
CviAII CATG 9 cut(s) 77, 88, 392, 424, 745, 778, 988, 1081, 1233
CviQI GTAC 2 cut(s) 158, 1192
DdeI CTNAG 3 cut(s) 51, 186, 803
DpnI GATC 3 cut(s) 589, 968, 1037
DpnII GATC 3 cut(s) 587, 966, 1035
Eam1104I CTCTTC 3 cut(s) 459, 605, 809
EarI CTCTTC 3 cut(s) 459, 605, 809
Ecl136II GAGCTC 1 cut(s) 1110
Eco130I CCWWGG 4 cut(s) 724, 884, 1080, 1195
Eco147I AGGCCT 1 cut(s) 544
Eco24I GRGCYC 3 cut(s) 556, 1112, 1138
Eco31I GGTCTC 1 cut(s) 1225
Eco47I GGWCC 2 cut(s) 793, 1207
Eco53kI GAGCTC 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 1055
EcoICRI GAGCTC 1 cut(s) 1110
EcoRII CCWGG 2 cut(s) 525, 544
EcoT14I CCWWGG 4 cut(s) 724, 884, 1080, 1195
EcoT38I GRGCYC 3 cut(s) 556, 1112, 1138
ErhI CCWWGG 4 cut(s) 724, 884, 1080, 1195
FaeI CATG 9 cut(s) 80, 91, 395, 427, 748, 781, 991, 1084, 1236
FaqI GGGAC 1 cut(s) 806
FatI CATG 9 cut(s) 76, 87, 391, 423, 744, 777, 987, 1080, 1232
FauI CCCGC 1 cut(s) 1078
Fnu4HI GCNGC 5 cut(s) 32, 309, 537, 749, 980
FokI GGATG 4 cut(s) 473, 820, 1010, 1216
FriOI GRGCYC 3 cut(s) 556, 1112, 1138
Fsp4HI GCNGC 5 cut(s) 32, 309, 537, 749, 980
FspBI CTAG 4 cut(s) 300, 540, 617, 885
GlaI GCGC 1 cut(s) 230
GluI GCNGC 5 cut(s) 32, 309, 537, 749, 980
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 3 cut(s) 94, 544, 673
HapII CCGG 2 cut(s) 573, 796
HhaI GCGC 1 cut(s) 231
Hin1II CATG 9 cut(s) 80, 91, 395, 427, 748, 781, 991, 1084, 1236
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 1006
HindII GTYRAC 1 cut(s) 1006
HinfI GANTC 4 cut(s) 472, 817, 926, 1212
HpaII CCGG 2 cut(s) 573, 796
HphI GGTGA 5 cut(s) 233, 263, 593, 816, 823
Hpy166II GTNNAC 2 cut(s) 733, 1006
Hpy188I TCNGA 3 cut(s) 187, 710, 948
Hpy188III TCNNGA 6 cut(s) 262, 345, 607, 701, 1057, 1141
Hpy8I GTNNAC 2 cut(s) 733, 1006
HpyAV CCTTC 4 cut(s) 281, 451, 890, 1016
HpyCH4III ACNGT 1 cut(s) 604
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 305, 437, 536, 757
HpyF3I CTNAG 3 cut(s) 51, 186, 803
Hsp92II CATG 9 cut(s) 80, 91, 395, 427, 748, 781, 991, 1084, 1236
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 587, 966, 1035
LmnI GCTCC 4 cut(s) 272, 504, 559, 1025
Lsp1109I GCAGC 5 cut(s) 43, 295, 548, 735, 991
LweI GCATC 3 cut(s) 55, 91, 760
MaeI CTAG 4 cut(s) 300, 540, 617, 885
MaeIII GTNAC 2 cut(s) 598, 835
MalI GATC 3 cut(s) 589, 968, 1037
MboI GATC 3 cut(s) 587, 966, 1035
MboII GAAGA 5 cut(s) 188, 476, 622, 826, 1184
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 4 cut(s) 556, 1112, 1138, 1189
MluCI AATT 3 cut(s) 365, 492, 567
MlyI GAGTC 1 cut(s) 826
MmeI TCCRAC 1 cut(s) 1181
MnlI CCTC 7 cut(s) 8, 121, 388, 462, 798, 1026, 1148
MseI TTAA 1 cut(s) 902
MslI CAYNNNNRTG 4 cut(s) 211, 842, 917, 1237
MspI CCGG 2 cut(s) 573, 796
MspR9I CCNGG 2 cut(s) 527, 546
Mva1269I GAATGC 1 cut(s) 860
MvaI CCWGG 2 cut(s) 527, 546
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 5 cut(s) 37, 305, 437, 536, 757
NcoI CCATGG 1 cut(s) 1080
NdeII GATC 3 cut(s) 587, 966, 1035
NlaIII CATG 9 cut(s) 80, 91, 395, 427, 748, 781, 991, 1084, 1236
NlaIV GGNNCC 5 cut(s) 506, 555, 794, 890, 1027
NmeAIII GCCGAG 1 cut(s) 1054
NmuCI GTSAC 1 cut(s) 835
NspI RCATGY 2 cut(s) 427, 748
NspV TTCGAA 2 cut(s) 565, 924
OliI CACNNNNGTG 2 cut(s) 211, 842
PceI AGGCCT 1 cut(s) 544
PciI ACATGT 1 cut(s) 423
PcsI WCGNNNNNNNCGW 2 cut(s) 930, 1044
PctI GAATGC 1 cut(s) 860
PfeI GAWTC 3 cut(s) 472, 926, 1212
PflMI CCANNNNNTGG 1 cut(s) 268
PinAI ACCGGT 1 cut(s) 795
PkrI GCNGC 5 cut(s) 33, 310, 538, 750, 981
PleI GAGTC 1 cut(s) 825
PpsI GAGTC 1 cut(s) 825
PscI ACATGT 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 1112
Psp6I CCWGG 2 cut(s) 525, 544
PspGI CCWGG 2 cut(s) 525, 544
PspN4I GGNNCC 5 cut(s) 506, 555, 794, 890, 1027
PspPI GGNCC 2 cut(s) 793, 1207
PsrI GAACNNNNNNTAC 2 cut(s) 725, 757
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 587
RsaI GTAC 2 cut(s) 159, 1193
RsaNI GTAC 2 cut(s) 158, 1192
RseI CAYNNNNRTG 4 cut(s) 211, 842, 917, 1237
SacI GAGCTC 1 cut(s) 1112
SaqAI TTAA 1 cut(s) 902
SatI GCNGC 5 cut(s) 32, 309, 537, 749, 980
Sau3AI GATC 3 cut(s) 587, 966, 1035
Sau96I GGNCC 2 cut(s) 793, 1207
SchI GAGTC 1 cut(s) 826
ScrFI CCNGG 2 cut(s) 527, 546
SduI GDGCHC 4 cut(s) 556, 1112, 1138, 1189
SfaNI GCATC 3 cut(s) 55, 91, 760
SfuI TTCGAA 2 cut(s) 565, 924
SinI GGWCC 2 cut(s) 793, 1207
SmiMI CAYNNNNRTG 4 cut(s) 211, 842, 917, 1237
SmlI CTYRAG 3 cut(s) 893, 1105, 1141
SmoI CTYRAG 3 cut(s) 893, 1105, 1141
Sse9I AATT 3 cut(s) 365, 492, 567
SseBI AGGCCT 1 cut(s) 544
SsiI CCGC 3 cut(s) 231, 662, 1085
SspI AATATT 1 cut(s) 562
SspMI CTAG 4 cut(s) 300, 540, 617, 885
SstI GAGCTC 1 cut(s) 1112
StuI AGGCCT 1 cut(s) 544
StyD4I CCNGG 2 cut(s) 525, 544
StyI CCWWGG 4 cut(s) 724, 884, 1080, 1195
TaaI ACNGT 1 cut(s) 604
TaqI TCGA 8 cut(s) 60, 242, 323, 565, 924, 933, 975, 1038
TaqII GACCGA 1 cut(s) 1224
TasI AATT 3 cut(s) 365, 492, 567
TfiI GAWTC 3 cut(s) 472, 926, 1212
Tru1I TTAA 1 cut(s) 902
Tru9I TTAA 1 cut(s) 902
TscAI CASTG 3 cut(s) 42, 515, 989
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 5 cut(s) 31, 308, 536, 748, 979
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 4 cut(s) 93, 378, 470, 477
TspRI CASTG 3 cut(s) 42, 515, 989
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 2 cut(s) 793, 1207
XapI RAATTY 1 cut(s) 365
XceI RCATGY 2 cut(s) 427, 748
XmaJI CCTAGG 1 cut(s) 884
XspI CTAG 4 cut(s) 300, 540, 617, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.