Prupe.4G233900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012286
Physical Location & Seq
Reverse (-)
15091721 .. 15092659
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G233900.1

Sequence Viewer

Length: 417 bp
ATGGAAGCCTCAGTCTCTTCCTTCACACAAATGGCAACTCCAACTTCCTCCAACAACACTCTCTTAGGAAGAAGCCTTCACATCTCAAAACATGCAAGCTTTACCAGAAAACCATGCAACCAGAACCAGCAGCTAGCTATGAAAAAACCAAGCACAAAAGCTTGGAGGGTTGCAGCAATTCATCATGTTCCGGTTGTAGTGGATCCAACCCCGGTTGCCATCACTTGGCAAATTGTTGTTGGAGCCATAGCTGGAGTTACACCTTTTGTGGTGGCTGGGATTGAATTCAGCAAAAGAATAATAGCACAGAAAAGATGTGAGGTATGTGGAGGGTCAGGGCTTGTTTTGACCAAAGAAGACTACGTCAAATGTCCTGGATGTGGTATGTGTTCAGATCATATGCTTTCAAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A2L_zn_ribbon

Protein Analysis

139

Amino Acids

14.78

Weight (kDa)

9.47

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 225
AclWI GGATC 2 cut(s) 197, 210
AcsI RAATTY 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 225, 380
AgsI TTSAA 2 cut(s) 284, 408
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 5 cut(s) 99, 133, 137, 161, 251
AluI AGCT 5 cut(s) 99, 133, 137, 161, 251
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 2 cut(s) 197, 210
ApeKI GCWGC 2 cut(s) 130, 173
ApoI RAATTY 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 133
BamHI GGATCC 1 cut(s) 202
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 142, 185
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 375
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 1 cut(s) 134
BisI GCNGC 2 cut(s) 131, 174
BlsI GCNGC 2 cut(s) 132, 175
Bme1390I CCNGG 2 cut(s) 212, 375
BmiI GGNNCC 2 cut(s) 204, 244
BmrFI CCNGG 2 cut(s) 212, 375
BmtI GCTAGC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 380
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 383
BseLI CCNNNNNNNGG 2 cut(s) 225, 380
BseMII CTCAG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 142, 185
BseYI CCCAGC 1 cut(s) 275
BsiSI CCGG 2 cut(s) 191, 212
BslI CCNNNNNNNGG 2 cut(s) 225, 380
BsmAI GTCTC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 202, 394
BspCNI CTCAG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 204, 244
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 2 cut(s) 197, 210
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 202, 394
Bst2UI CCWGG 1 cut(s) 375
Bst6I CTCTTC 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 97, 135
BstDEI CTNAG 2 cut(s) 10, 64
BstF5I GGATG 1 cut(s) 383
BstKTI GATC 2 cut(s) 205, 397
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 202, 394
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 210, 373
BstV1I GCAGC 2 cut(s) 142, 185
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BtsCI GGATG 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 97, 135
CviAII CATG 3 cut(s) 92, 114, 185
DdeI CTNAG 2 cut(s) 10, 64
DpnI GATC 2 cut(s) 204, 396
DpnII GATC 2 cut(s) 202, 394
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 3 cut(s) 95, 117, 188
FaiI YATR 9 cut(s) 93, 115, 140, 186, 248, 325, 386, 399, 401
FatI CATG 3 cut(s) 91, 113, 184
FauNDI CATATG 1 cut(s) 399
Fnu4HI GCNGC 2 cut(s) 131, 174
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 2 cut(s) 131, 174
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 131, 174
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 2 cut(s) 191, 212
Hin1II CATG 3 cut(s) 95, 117, 188
HindIII AAGCTT 2 cut(s) 97, 159
HpaII CCGG 2 cut(s) 191, 212
Hpy188I TCNGA 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 31, 86
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 95, 117, 173
HpyF3I CTNAG 2 cut(s) 10, 64
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 95, 117, 188
Kzo9I GATC 2 cut(s) 202, 394
LmnI GCTCC 1 cut(s) 242
Lsp1109I GCAGC 2 cut(s) 142, 185
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 204, 396
MboI GATC 2 cut(s) 202, 394
MboII GAAGA 3 cut(s) 9, 81, 368
MflI RGATCY 1 cut(s) 202
MluCI AATT 3 cut(s) 177, 231, 284
MmeI TCCRAC 4 cut(s) 65, 75, 220, 230
MnlI CCTC 5 cut(s) 19, 58, 159, 313, 323
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 2 cut(s) 191, 212
MspR9I CCNGG 2 cut(s) 212, 375
MvaI CCWGG 1 cut(s) 375
NciI CCSGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 399
NdeII GATC 2 cut(s) 202, 394
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 3 cut(s) 95, 117, 188
NlaIV GGNNCC 2 cut(s) 204, 244
NspI RCATGY 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 373
PkrI GCNGC 2 cut(s) 132, 175
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 2 cut(s) 204, 244
PsuI RGATCY 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 2 cut(s) 131, 174
Sau3AI GATC 2 cut(s) 202, 394
ScrFI CCNGG 2 cut(s) 212, 375
SetI ASST 8 cut(s) 101, 135, 139, 163, 253, 265, 324, 366
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 3 cut(s) 177, 231, 284
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 210, 373
TaiI ACGT 1 cut(s) 366
TasI AATT 3 cut(s) 177, 231, 284
TseI GCWGC 2 cut(s) 130, 173
TspDTI ATGAA 2 cut(s) 155, 170
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 225
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 95
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.