Rh5AG288600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012286
Physical Location & Seq
Reverse (-)
39139419 .. 39141819
2401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG288600.1

Sequence Viewer

Length: 357 bp
ATGGAAGCCTCGATCTCCTCCCTCACACTCATCAGAACCCCAACCAAGTCCAACTCCAGCACAGCTATATTTCCAAGCATTAACATCACAAAACCATATGATTCATGCTCCATTACCAGAACAAAATGCCACAACCTCGCTTTTGCTATAAACACTACTCCAACCCTCCGCGGCAGAAAAGCTTGGAAGACTGCAGCTATCGAAGATGTTTCCGGCGCTATAACGGATACAGGACCGGTCGTCCTCACCTGGCAAATTGTCGTCGGAGCTATAGCTGGAGTTACACCTTTTGTGGTGGCAGGGATTGAATTCAGCAAAAGAATTGTAAGTACCTTTCGATGTTCATATAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A2L_zn_ribbon

Protein Analysis

118

Amino Acids

12.68

Weight (kDa)

9.78

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 355
AccII CGCG 1 cut(s) 171
AciI CCGC 2 cut(s) 169, 171
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 1 cut(s) 308
AhdI GACNNNNNGTC 1 cut(s) 239
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 5 cut(s) 65, 182, 197, 269, 275
AluI AGCT 5 cut(s) 65, 182, 197, 269, 275
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 235
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 250
BciVI GTATCC 1 cut(s) 220
BfmI CTRYAG 2 cut(s) 192, 270
BfoI RGCGCY 1 cut(s) 219
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 2 cut(s) 172, 195
BlsI GCNGC 2 cut(s) 173, 196
Bme1390I CCNGG 1 cut(s) 250
Bme18I GGWCC 1 cut(s) 233
BmeRI GACNNNNNGTC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 2 cut(s) 40, 297
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 169
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 235
BsiEI CGRYCG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 213, 236
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 2 cut(s) 169, 171
BspFNI CGCG 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMCI CGRYCG 1 cut(s) 240
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 248
BstSFI CTRYAG 2 cut(s) 192, 270
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 194
BsuI GTATCC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 169
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 233
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 330
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 1 cut(s) 105
CviJI RGCY 6 cut(s) 8, 65, 182, 197, 269, 275
CviKI_1 RGCY 6 cut(s) 8, 65, 182, 197, 269, 275
CviQI GTAC 1 cut(s) 330
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
DriI GACNNNNNGTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 248
FaeI CATG 1 cut(s) 108
FatI CATG 1 cut(s) 104
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 172, 195
Fsp4HI GCNGC 2 cut(s) 172, 195
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 172, 195
GsuI CTGGAG 2 cut(s) 40, 297
HaeII RGCGCY 1 cut(s) 219
HapII CCGG 2 cut(s) 213, 236
HhaI GCGC 1 cut(s) 218
Hin1II CATG 1 cut(s) 108
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 213, 236
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 35, 266
Hpy99I CGWCG 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 194
Hsp92II CATG 1 cut(s) 108
HspAI GCGC 1 cut(s) 216
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 113, 266
LpnPI CCDG 9 cut(s) 70, 130, 216, 226, 235, 249, 261, 262, 285
Lsp1109I GCAGC 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 2 cut(s) 199, 215
MluCI AATT 4 cut(s) 255, 308, 321, 350
MmeI TCCRAC 3 cut(s) 75, 185, 244
MnlI CCTC 6 cut(s) 19, 28, 32, 146, 176, 254
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 2 cut(s) 213, 236
MspR9I CCNGG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 250
MvnI CGCG 1 cut(s) 171
NdeI CATATG 1 cut(s) 97
NdeII GATC 1 cut(s) 12
NlaIII CATG 1 cut(s) 108
PfeI GAWTC 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 2 cut(s) 173, 196
PsiI TTATAA 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 196
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 172, 195
Sau3AI GATC 1 cut(s) 12
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 250
SetI ASST 9 cut(s) 67, 138, 184, 199, 251, 271, 277, 289, 335
SfcI CTRYAG 2 cut(s) 192, 270
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 1 cut(s) 233
Sse9I AATT 4 cut(s) 255, 308, 321, 350
SsiI CCGC 2 cut(s) 169, 171
StyD4I CCNGG 1 cut(s) 248
TaqI TCGA 3 cut(s) 11, 201, 337
TasI AATT 4 cut(s) 255, 308, 321, 350
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 93, 333
TspGWI ACGGA 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.