Rroxscaffold_1G00038010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012286
Physical Location & Seq
Forward (+)
55340473 .. 55341700
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038010.1

Sequence Viewer

Length: 453 bp
ATGGAAGCCTCGATCTCCTCCTTCACACTAATCAGAACCCCAACCAAGTCCAACTCCAGCACAGCTATATTTCCAAGCATTAACATCACAAAACCATATGATTCATGCTCTATTTCCAGAACAAAATCCCACAACCTCGCTTTTGCTATATACACTACTCCAACCCTCCGCGGCAGAAAAGCTTGGAAGACTGCAGCTATCGAAGATGTTTCCGGCACTATAACAGATCCGGGACCGGTCGTCCTCACCTGGCAAATTGTCGTCGGAGCTATAGCTGGAGTTACACCTTTTGTGGTGGCAGGGATTGAATTCAGCAAAAGAATTATAGTACAACAGAGATGCGATGTGTGTGGAGGGTCAGGACTTGTTTTGACGAAAGAAAACTATATCAAATGTCCTGGATGTGGTGGATTTCTCCCTTGGCAATCATGGAAAAGATTCTTTACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
A2L_zn_ribbon

Protein Analysis

150

Amino Acids

16.24

Weight (kDa)

9.54

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012286)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55570 AT5G55570
fragaria_vesca FvH4_3g24050
malus_domestica MD11G1204800.v1.1
prunus_persica Prupe.4G233900_v2.0.a1 Prupe.4G233900_v2.0.a1
pyrus_communis pycom11g17750
rosa_chinensis RchiOBHm_Chr5g0042631
rosa_laevigata RLG00000034146
rosa_multiflora Rmu_sc0004355.1_g000002
rosa_roxburghii Rroxscaffold_1G00038010 Rroxscaffold_6G00401810
rosa_rugosa Rorug05G0203300 Rorug05G0203400
rosa_samantha Rh5AG288600 Rh5BG292700 Rh5CG325100 Rh5DG302600
rosa_wichuraiana Rw5G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 171
AciI CCGC 2 cut(s) 169, 171
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 404
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 1 cut(s) 308
AhdI GACNNNNNGTC 1 cut(s) 239
AjnI CCWGG 2 cut(s) 248, 397
AluBI AGCT 5 cut(s) 65, 182, 197, 269, 275
AluI AGCT 5 cut(s) 65, 182, 197, 269, 275
AlwI GGATC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 233
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 250, 399
BcnI CCSGG 1 cut(s) 231
BfmI CTRYAG 2 cut(s) 192, 270
BisI GCNGC 2 cut(s) 172, 195
BlsI GCNGC 2 cut(s) 173, 196
Bme1390I CCNGG 3 cut(s) 231, 250, 399
Bme18I GGWCC 1 cut(s) 233
BmeRI GACNNNNNGTC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 3 cut(s) 231, 250, 399
BmsI GCATC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 194
BpmI CTGGAG 2 cut(s) 40, 297
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 169, 419
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 451
BseBI CCWGG 2 cut(s) 250, 399
BseDI CCNNGG 2 cut(s) 169, 419
BseGI GGATG 1 cut(s) 407
BseLI CCNNNNNNNGG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 206
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 235
BsiEI CGRYCG 1 cut(s) 240
BsiSI CCGG 3 cut(s) 213, 230, 236
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 12, 226
BspACI CCGC 2 cut(s) 169, 171
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 169, 419
BssMI GATC 2 cut(s) 12, 226
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 2 cut(s) 250, 399
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 407
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 2 cut(s) 15, 229
BstMBI GATC 2 cut(s) 12, 226
BstMCI CGRYCG 1 cut(s) 240
BstNI CCWGG 2 cut(s) 250, 399
BstSCI CCNGG 3 cut(s) 229, 248, 397
BstSFI CTRYAG 2 cut(s) 192, 270
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 169
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 233
Cfr42I CCGCGG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 329
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 2 cut(s) 105, 429
CviJI RGCY 7 cut(s) 8, 65, 182, 197, 269, 275, 450
CviKI_1 RGCY 7 cut(s) 8, 65, 182, 197, 269, 275, 450
CviQI GTAC 1 cut(s) 329
DpnI GATC 2 cut(s) 14, 228
DpnII GATC 2 cut(s) 12, 226
DriI GACNNNNNGTC 1 cut(s) 239
Eam1105I GACNNNNNGTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 248, 397
EcoT14I CCWWGG 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 2 cut(s) 108, 432
FaqI GGGAC 1 cut(s) 246
FatI CATG 2 cut(s) 104, 428
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 172, 195
FokI GGATG 1 cut(s) 414
Fsp4HI GCNGC 2 cut(s) 172, 195
GluI GCNGC 2 cut(s) 172, 195
GsuI CTGGAG 2 cut(s) 40, 297
HapII CCGG 3 cut(s) 213, 230, 236
Hin1II CATG 2 cut(s) 108, 432
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 2 cut(s) 101, 438
HpaII CCGG 3 cut(s) 213, 230, 236
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 2 cut(s) 35, 266
Hpy188III TCNNGA 2 cut(s) 117, 360
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 194
Hsp92II CATG 2 cut(s) 108, 432
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 12, 226
LmnI GCTCC 1 cut(s) 266
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 14, 228
MboI GATC 2 cut(s) 12, 226
MboII GAAGA 2 cut(s) 199, 215
MflI RGATCY 1 cut(s) 226
MluCI AATT 3 cut(s) 255, 308, 321
MmeI TCCRAC 3 cut(s) 75, 185, 244
MnlI CCTC 6 cut(s) 19, 28, 146, 176, 254, 347
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 3 cut(s) 213, 230, 236
MspR9I CCNGG 3 cut(s) 231, 250, 399
MvaI CCWGG 2 cut(s) 250, 399
MvnI CGCG 1 cut(s) 171
NciI CCSGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 97
NdeII GATC 2 cut(s) 12, 226
NlaIII CATG 2 cut(s) 108, 432
NlaIV GGNNCC 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 101, 438
PfoI TCCNGGA 2 cut(s) 229, 397
PinAI ACCGGT 1 cut(s) 235
PkrI GCNGC 2 cut(s) 173, 196
Psp6I CCWGG 2 cut(s) 248, 397
PspGI CCWGG 2 cut(s) 248, 397
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 2 cut(s) 172, 195
Sau3AI GATC 2 cut(s) 12, 226
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 231, 250, 399
SetI ASST 8 cut(s) 67, 138, 184, 199, 251, 271, 277, 289
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 2 cut(s) 192, 270
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 1 cut(s) 233
Sse9I AATT 3 cut(s) 255, 308, 321
SsiI CCGC 2 cut(s) 169, 171
StyD4I CCNGG 3 cut(s) 229, 248, 397
StyI CCWWGG 1 cut(s) 419
TaqI TCGA 2 cut(s) 11, 201
TasI AATT 3 cut(s) 255, 308, 321
TatI WGTACW 1 cut(s) 328
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 101, 438
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 308
XmnI GAANNNNTTC 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.