Rorug05G0203400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
20207290 .. 20209507
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0203400.1

Sequence Viewer

Length: 249 bp
ATGCTAACCAAGTTGCTCGAGAAATCTTCCAATCTAGAATCTCTTGTGTTGGAACATGAGAAAGATTATCCTCGCTCTAATGGTGAAGATGAATCACGTTTAGTGGCTACATATAAAGGGGGTTTCGATTACATAGAAGTGCCGCATTGGAGTCCACCGAAGTCTCTGCCCACCGGTTTTCTGTCACACCTGAAGACCATCTGCATAAAGGGATTCAAGGGAAAGGGATTTTTTTGGATATCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.36

Weight (kDa)

8.74

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012286)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 212
AgeI ACCGGT 1 cut(s) 173
AgsI TTSAA 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 17
AsiGI ACCGGT 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 200
BccI CCATC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 17
BspACI CCGC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 173
CspAI ACCGGT 1 cut(s) 173
CviAII CATG 1 cut(s) 56
CviJI RGCY 1 cut(s) 107
CviKI_1 RGCY 1 cut(s) 107
Eco32I GATATC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 17
EcoRV GATATC 1 cut(s) 240
FaeI CATG 1 cut(s) 59
FaiI YATR 5 cut(s) 57, 112, 114, 134, 206
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 143
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 59
HinfI GANTC 4 cut(s) 38, 92, 151, 213
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 19, 35
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 1 cut(s) 59
LpnPI CCDG 2 cut(s) 187, 203
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 183
MboII GAAGA 3 cut(s) 18, 98, 205
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 17
PfeI GAWTC 3 cut(s) 38, 92, 213
PinAI ACCGGT 1 cut(s) 173
PkrI GCNGC 1 cut(s) 144
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 137
SatI GCNGC 1 cut(s) 143
SchI GAGTC 1 cut(s) 160
SetI ASST 2 cut(s) 100, 192
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 35
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 18, 126
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 3 cut(s) 38, 92, 213
TseFI GTSAC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 1 cut(s) 105
XbaI TCTAGA 1 cut(s) 34
XhoI CTCGAG 1 cut(s) 17
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.