AT5G56180

Actin-related protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
22737325 .. 22741100
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56180.1

Sequence Viewer

Length: 1416 bp
ATGATCCTGAAGAAAGTATGGGGATCGGTGTGGAACCGATCGAATAGTGGCAAGGATTTGGTGAATCATCAGAGAGCGATCGATGTTCCTCCTCTGTTATTGTCTTCTTCATCGTCTCTTGGTGCGTTTGATCAGCTACCGATGGATATTCTAGTCCAGATACTGATGATGATGGAGCCAAAAGATGCTGTGAAATTGGGCTTAACGTGCAAAGCCTGGAAATGCGTAGCTAGTGGTAATCGTCTCTGGATATTTTATCTCCAGTGTTCTCAAGAGCCATGGGACTCCATTTTCTTCGCTGAAACTAGTTTGCGTTCTGGTTATCCTCTCCGAATGATTTCTAGTCAATCAGGAGAGTTGTCGTTTATGCACATTTATAGTCAGAGGGCACAAGTTCCTGGTTCTATCATTATTGATGGTGGTTCTGGATATTGTAAGTTTGGTTGGAGCAAGTATGCGTCTCCTTCTGGACGTTCTGCTACTTTTTTGGAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAGTTCTTTGCAACCATTTTCACCAGGATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGGTATCACTACCTCTCTGCCATTTTGATGATACTGAATCAGCCAAGGCATCAAGGCGGCAACTTAAGACTGCTATTTTCAATGTCTTGTTTGACATGAACGTCCCTGCAGTGTGTGCAGTTAATCAGGCTGTGTTAGCTCTATATGCAGCACGGCGGACATCTGGAATTGTTGTCAACATTGGTTTCCAAGTCATCACCATTCTTCCGATTTTACATGGTAAGGTGATGCGCCAGGTAGGTGTAGAAGTCATTGGTTTTGGAGCATTGAAACTCACGGGCTTCCTTAAGGAGAAGATGCAAGAAAACAACATTTCCTTTCAATCACTCTACACTGTTCGTACTCTTAAAGAGAAACTGTGTTATGTGGCTCTTGATTATAAAGCTGAACTTTCAAAAGACACACAAGCTTCAGTGGAAGTTTCAGGTGAAGGATGGTTTACTTTATCAAAAGAGCGTTTCCAAACAGGGGAGATATTATTCCAACCACGTCTCGCTGGAATGCGTGCAATGAGTCTGCACCAGGCCGTCTCGCTCTGTATGGACCACTGTGATGCAGCAGGACTTACAGGTGACGATAGTTGGTTCAAGACTGTAGTACTAACTGGGGGAAGCGCGTGTTTGCCTGGACTCTCAGAGAGGCTAGAGAGAGAACTGCAAGATCACCTTCCTTCATCTATAAGTAACGGAATCAGAGTAATACCTCCTCCTTACGGCGTGGACACATCATGGCATGGGGCAAAGCTTATTAGTAATTTGAGCATCTTTCCTGGTCCTTGGTGTATCACAAGGAAGCAGTTCCGTCGCAAGTCAAGACTCATGTGGTGA

Protein Analysis

471

Amino Acids

52.51

Weight (kDa)

9.22

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 43 - 83 2.9e-09 F-box-like
F-box PF00646 43 - 84 1.7e-07 F-box domain
Actin PF00022 185 - 309 1.6e-11 Actin
Actin PF00022 303 - 462 3.8e-17 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 969
AasI GACNNNNNNGTC 1 cut(s) 689
Acc36I ACCTGC 1 cut(s) 553
AccII CGCG 1 cut(s) 1205
AciI CCGC 2 cut(s) 646, 745
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 2 cut(s) 29, 984
AfaI GTAC 2 cut(s) 931, 1188
AfiI CCNNNNNNNGG 2 cut(s) 1057, 1301
AflII CTTAAG 2 cut(s) 653, 875
AgsI TTSAA 6 cut(s) 530, 670, 859, 911, 984, 1177
AhlI ACTAGT 1 cut(s) 305
AjiI CACGTC 1 cut(s) 1079
AjnI CCWGG 7 cut(s) 215, 397, 554, 822, 1110, 1213, 1357
AluBI AGCT 6 cut(s) 136, 230, 728, 974, 998, 1333
AluI AGCT 6 cut(s) 136, 230, 728, 974, 998, 1333
Alw26I GTCTC 5 cut(s) 120, 248, 465, 1085, 1123
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 163
AoxI GGCC 1 cut(s) 1113
ApeKI GCWGC 3 cut(s) 580, 737, 1145
ApoI RAATTY 1 cut(s) 491
Asp700I GAANNNNTTC 2 cut(s) 337, 1385
AspLEI GCGC 2 cut(s) 822, 1205
AspS9I GGNCC 2 cut(s) 1132, 1361
AsuHPI GGTGA 8 cut(s) 73, 501, 544, 778, 826, 1028, 1172, 1244
AvaII GGWCC 2 cut(s) 1132, 1361
BaeGI GKGCMC 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 592, 749, 1157
BccI CCATC 4 cut(s) 136, 166, 410, 1017
BceAI ACGGC 3 cut(s) 758, 1100, 1318
BcgI CGANNNNNNTGC 2 cut(s) 1373, 1407
BciT130I CCWGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 5 cut(s) 120, 248, 465, 1085, 1123
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 6 cut(s) 152, 231, 306, 342, 522, 1232
BfmI CTRYAG 2 cut(s) 696, 1182
BfrI CTTAAG 2 cut(s) 653, 875
BfuAI ACCTGC 1 cut(s) 553
BisI GCNGC 4 cut(s) 581, 647, 738, 1146
BlsI GCNGC 4 cut(s) 582, 648, 739, 1147
BmcAI AGTACT 1 cut(s) 1188
Bme1390I CCNGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
Bme18I GGWCC 2 cut(s) 1132, 1361
BmgBI CACGTC 1 cut(s) 1079
BmgT120I GGNCC 2 cut(s) 1132, 1361
BmiI GGNNCC 2 cut(s) 35, 177
BmrFI CCNGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
BmrI ACTGGG 1 cut(s) 1203
BmsI GCATC 7 cut(s) 175, 549, 647, 807, 876, 1132, 1359
BmuI ACTGGG 1 cut(s) 1203
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 255
Bsa29I ATCGAT 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 278, 633, 1364
Bsc4I CCNNNNNNNGG 2 cut(s) 1057, 1301
Bse1I ACTGG 2 cut(s) 262, 1198
Bse3DI GCAATG 1 cut(s) 1104
BseBI CCWGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
BseCI ATCGAT 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 278, 633, 1364
BseGI GGATG 2 cut(s) 564, 1028
BseLI CCNNNNNNNGG 2 cut(s) 1057, 1301
BseMI GCAATG 1 cut(s) 1104
BseMII CTCAG 1 cut(s) 1236
BseNI ACTGG 2 cut(s) 262, 1198
BseRI GAGGAG 2 cut(s) 81, 1284
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 3 cut(s) 592, 749, 1157
BsgI GTGCAG 2 cut(s) 726, 1091
Bsh1236I CGCG 1 cut(s) 1205
Bsh1285I CGRYCG 2 cut(s) 41, 81
BshFI GGCC 1 cut(s) 1115
BshVI ATCGAT 1 cut(s) 81
BsiEI CGRYCG 2 cut(s) 41, 81
BslFI GGGAC 2 cut(s) 296, 677
BslI CCNNNNNNNGG 2 cut(s) 1057, 1301
BsmAI GTCTC 5 cut(s) 120, 248, 465, 1085, 1123
BsmBI CGTCTC 5 cut(s) 120, 248, 465, 1085, 1123
BsmFI GGGAC 2 cut(s) 296, 677
BsmI GAATGC 1 cut(s) 1095
BsnI GGCC 1 cut(s) 1115
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
Bsp19I CCATGG 1 cut(s) 278
BspACI CCGC 2 cut(s) 646, 745
BspANI GGCC 1 cut(s) 1115
BspCNI CTCAG 1 cut(s) 1235
BspDI ATCGAT 1 cut(s) 81
BspFNI CGCG 1 cut(s) 1205
BspLI GGNNCC 2 cut(s) 35, 177
BspMAI CTGCAG 1 cut(s) 700
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 1 cut(s) 31
BspTI CTTAAG 2 cut(s) 653, 875
BsrDI GCAATG 1 cut(s) 1104
BsrI ACTGG 2 cut(s) 262, 1198
BssECI CCNNGG 3 cut(s) 278, 633, 1364
BssMI GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
BssT1I CCWWGG 3 cut(s) 278, 633, 1364
Bst2UI CCWGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
Bst4CI ACNGT 5 cut(s) 534, 925, 948, 1139, 1183
BstAFI CTTAAG 2 cut(s) 653, 875
BstAPI GCANNNNNTGC 1 cut(s) 704
BstC8I GCNNGC 1 cut(s) 1095
BstDEI CTNAG 1 cut(s) 1222
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 564, 1028
BstFNI CGCG 1 cut(s) 1205
BstHHI GCGC 2 cut(s) 822, 1205
BstKTI GATC 6 cut(s) 6, 26, 41, 81, 133, 1252
BstMAI GTCTC 5 cut(s) 120, 248, 465, 1085, 1123
BstMBI GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
BstMCI CGRYCG 2 cut(s) 41, 81
BstMWI GCNNNNNNNGC 6 cut(s) 207, 568, 577, 704, 725, 734
BstNI CCWGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
BstSCI CCNGG 7 cut(s) 215, 397, 554, 822, 1110, 1213, 1357
BstSFI CTRYAG 2 cut(s) 696, 1182
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 1 cut(s) 1205
BstV1I GCAGC 3 cut(s) 592, 749, 1157
BstV2I GAAGAC 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 81
BsuRI GGCC 1 cut(s) 1115
BsuTUI ATCGAT 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 278
BtrI CACGTC 1 cut(s) 1079
BtsCI GGATG 2 cut(s) 564, 1028
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 5 cut(s) 269, 705, 921, 1008, 1135
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 1 cut(s) 1095
CaiI CAGNNNCTG 1 cut(s) 163
CfoI GCGC 2 cut(s) 822, 1205
Cfr13I GGNCC 2 cut(s) 1132, 1361
ClaI ATCGAT 1 cut(s) 81
CseI GACGC 1 cut(s) 447
Csp6I GTAC 2 cut(s) 930, 1187
CviAII CATG 6 cut(s) 279, 685, 806, 1317, 1322, 1408
CviQI GTAC 2 cut(s) 930, 1187
DdeI CTNAG 1 cut(s) 1222
DpnI GATC 6 cut(s) 5, 25, 40, 80, 132, 1251
DpnII GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
DrdI GACNNNNNNGTC 1 cut(s) 689
DseDI GACNNNNNNGTC 1 cut(s) 689
EciI GGCGGA 1 cut(s) 760
Eco130I CCWWGG 3 cut(s) 278, 633, 1364
Eco47I GGWCC 2 cut(s) 1132, 1361
Eco57I CTGAAG 2 cut(s) 29, 984
EcoRII CCWGG 7 cut(s) 215, 397, 554, 822, 1110, 1213, 1357
EcoT14I CCWWGG 3 cut(s) 278, 633, 1364
ErhI CCWWGG 3 cut(s) 278, 633, 1364
Esp3I CGTCTC 5 cut(s) 120, 248, 465, 1085, 1123
FaeI CATG 6 cut(s) 282, 688, 809, 1320, 1325, 1411
FalI AAGNNNNNCTT 4 cut(s) 963, 995, 1239, 1271
FaqI GGGAC 2 cut(s) 296, 677
FatI CATG 6 cut(s) 278, 684, 805, 1316, 1321, 1407
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 581, 647, 738, 1146
FokI GGATG 2 cut(s) 571, 1035
Fsp4HI GCNGC 4 cut(s) 581, 647, 738, 1146
FspBI CTAG 6 cut(s) 152, 231, 306, 342, 522, 1232
GlaI GCGC 2 cut(s) 821, 1204
GluI GCNGC 4 cut(s) 581, 647, 738, 1146
GsuI CTGGAG 1 cut(s) 245
HaeIII GGCC 1 cut(s) 1115
HgaI GACGC 1 cut(s) 447
HhaI GCGC 2 cut(s) 822, 1205
Hin1II CATG 6 cut(s) 282, 688, 809, 1320, 1325, 1411
Hin6I GCGC 2 cut(s) 820, 1203
HinP1I GCGC 2 cut(s) 820, 1203
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 2 cut(s) 996, 1331
HinfI GANTC 8 cut(s) 64, 284, 506, 626, 1102, 1218, 1278, 1404
HphI GGTGA 8 cut(s) 73, 501, 544, 778, 826, 1028, 1172, 1244
Hpy166II GTNNAC 3 cut(s) 766, 1029, 1309
Hpy188I TCNGA 6 cut(s) 72, 332, 384, 798, 1225, 1283
Hpy8I GTNNAC 3 cut(s) 766, 1029, 1309
Hpy99I CGWCG 1 cut(s) 1395
HpyAV CCTTC 4 cut(s) 474, 1013, 1265, 1269
HpyCH4III ACNGT 5 cut(s) 534, 925, 948, 1139, 1183
HpyCH4IV ACGT 4 cut(s) 206, 472, 690, 1078
HpyF10VI GCNNNNNNNGC 6 cut(s) 207, 568, 577, 704, 725, 734
HpyF3I CTNAG 1 cut(s) 1222
HpySE526I ACGT 4 cut(s) 206, 472, 690, 1078
Hsp92II CATG 6 cut(s) 282, 688, 809, 1320, 1325, 1411
HspAI GCGC 2 cut(s) 820, 1203
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
LmnI GCTCC 3 cut(s) 175, 447, 851
Lsp1109I GCAGC 3 cut(s) 592, 749, 1157
LweI GCATC 7 cut(s) 175, 549, 647, 807, 876, 1132, 1359
MaeI CTAG 6 cut(s) 152, 231, 306, 342, 522, 1232
MaeII ACGT 4 cut(s) 206, 472, 690, 1078
MaeIII GTNAC 4 cut(s) 497, 507, 1160, 1271
MalI GATC 6 cut(s) 5, 25, 40, 80, 132, 1251
MboI GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
MboII GAAGA 6 cut(s) 22, 96, 99, 286, 785, 895
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 4 cut(s) 194, 491, 756, 1342
MlyI GAGTC 5 cut(s) 278, 515, 1111, 1212, 1398
MmeI TCCRAC 2 cut(s) 425, 1096
MnlI CCTC 9 cut(s) 99, 102, 336, 378, 583, 612, 1221, 1302, 1305
MroXI GAANNNNTTC 2 cut(s) 337, 1385
MseI TTAA 5 cut(s) 203, 654, 711, 876, 936
MslI CAYNNNNRTG 3 cut(s) 557, 615, 1140
MspCI CTTAAG 2 cut(s) 653, 875
MspR9I CCNGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
Mva1269I GAATGC 1 cut(s) 1095
MvaI CCWGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
MvnI CGCG 1 cut(s) 1205
MwoI GCNNNNNNNGC 6 cut(s) 207, 568, 577, 704, 725, 734
NcoI CCATGG 1 cut(s) 278
NdeII GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
NlaIII CATG 6 cut(s) 282, 688, 809, 1320, 1325, 1411
NlaIV GGNNCC 2 cut(s) 35, 177
NmuCI GTSAC 2 cut(s) 507, 1160
PctI GAATGC 1 cut(s) 1095
PdmI GAANNNNTTC 2 cut(s) 337, 1385
PfeI GAWTC 3 cut(s) 64, 626, 1278
PkrI GCNGC 4 cut(s) 582, 648, 739, 1147
Ple19I CGATCG 2 cut(s) 41, 81
PleI GAGTC 5 cut(s) 278, 514, 1110, 1212, 1398
PpsI GAGTC 5 cut(s) 278, 514, 1110, 1212, 1398
PsiI TTATAA 1 cut(s) 969
Psp6I CCWGG 7 cut(s) 215, 397, 554, 822, 1110, 1213, 1357
PspGI CCWGG 7 cut(s) 215, 397, 554, 822, 1110, 1213, 1357
PspN4I GGNNCC 2 cut(s) 35, 177
PspPI GGNCC 2 cut(s) 1132, 1361
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 163
PvuI CGATCG 2 cut(s) 41, 81
RsaI GTAC 2 cut(s) 931, 1188
RsaNI GTAC 2 cut(s) 930, 1187
RseI CAYNNNNRTG 3 cut(s) 557, 615, 1140
SaqAI TTAA 5 cut(s) 203, 654, 711, 876, 936
SatI GCNGC 4 cut(s) 581, 647, 738, 1146
Sau3AI GATC 6 cut(s) 3, 23, 38, 78, 130, 1249
Sau96I GGNCC 2 cut(s) 1132, 1361
ScaI AGTACT 1 cut(s) 1188
SchI GAGTC 5 cut(s) 278, 515, 1111, 1212, 1398
ScrFI CCNGG 7 cut(s) 217, 399, 556, 824, 1112, 1215, 1359
SduI GDGCHC 1 cut(s) 391
SfaNI GCATC 7 cut(s) 175, 549, 647, 807, 876, 1132, 1359
SfcI CTRYAG 2 cut(s) 696, 1182
SinI GGWCC 2 cut(s) 1132, 1361
SmiMI CAYNNNNRTG 3 cut(s) 557, 615, 1140
SmlI CTYRAG 3 cut(s) 270, 653, 875
SmoI CTYRAG 3 cut(s) 270, 653, 875
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 4 cut(s) 194, 491, 756, 1342
SsiI CCGC 2 cut(s) 646, 745
SspMI CTAG 6 cut(s) 152, 231, 306, 342, 522, 1232
StyD4I CCNGG 7 cut(s) 215, 397, 554, 822, 1110, 1213, 1357
StyI CCWWGG 3 cut(s) 278, 633, 1364
TaaI ACNGT 5 cut(s) 534, 925, 948, 1139, 1183
TaiI ACGT 4 cut(s) 209, 475, 693, 1081
TaqI TCGA 2 cut(s) 41, 81
TasI AATT 4 cut(s) 194, 491, 756, 1342
TatI WGTACW 1 cut(s) 1186
TauI GCSGC 1 cut(s) 649
TfiI GAWTC 3 cut(s) 64, 626, 1278
Tru1I TTAA 5 cut(s) 203, 654, 711, 876, 936
Tru9I TTAA 5 cut(s) 203, 654, 711, 876, 936
TscAI CASTG 5 cut(s) 269, 705, 928, 1008, 1142
TseFI GTSAC 2 cut(s) 507, 1160
TseI GCWGC 3 cut(s) 580, 737, 1145
Tsp45I GTSAC 2 cut(s) 507, 1160
TspDTI ATGAA 3 cut(s) 99, 701, 1251
TspGWI ACGGA 2 cut(s) 1290, 1379
TspRI CASTG 5 cut(s) 269, 705, 928, 1008, 1142
Vha464I CTTAAG 2 cut(s) 653, 875
VpaK11BI GGWCC 2 cut(s) 1132, 1361
XapI RAATTY 1 cut(s) 491
XmnI GAANNNNTTC 2 cut(s) 337, 1385
XspI CTAG 6 cut(s) 152, 231, 306, 342, 522, 1232
ZrmI AGTACT 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.