Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004753

Physical Location & Seq

Genomic Coordinates Reverse (-)

3890478 .. 3891244

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1044100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGTATCTATGGTCAACGAGTTCAAGTTCTTGGTTCTGTTATCATTGACGGGGGCTCTGGCTATTGCAAGTTTGGCTGGAGCAAATACGCATGTCCATCAGGCCGGTCAGCAACCTTTTTGGTGAAGTGGTCTGACTTGCAAGAATTTGGTAATGTTGAGTCGCCGATGATGCAGGCGAAGCCATCTTCGCAGCCCGTGGTCTTGTCTATACCAATCTGCCATTATGATGGTGAGCTGCTACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin F-box F-box-like

Protein Analysis

83

Amino Acids

8.91

Weight (kDa)

6.52

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56180 AT5G56180 AT5G56180
fragaria_vesca	FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660
malus_domestica	MD03G1042500.v1.1 MD11G1043300.v1.1 MD11G1044100.v1.1 MD11G1044700.v1.1 MD11G1045300.v1.1 MD11G1045700.v1.1
prunus_persica	Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1
pyrus_communis	pycom03g03280 pycom11g03700
rosa_chinensis	RchiOBHm_Chr5g0074751
rosa_laevigata	RLG00000036501
rosa_multiflora	Rmu_sc0000909.1_g000019
rosa_roxburghii	Rroxscaffold_1G00006830
rosa_rugosa	Rorug05G0433600
rosa_samantha	Rh5AG491300 Rh5BG512700 Rh5CG536400 Rh5DG524700
rosa_wichuraiana	Rw5G045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	193, 238
ApoI	RAATTY	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	136, 245
BanII	GRGCYC	1 cut(s)	59
BbvI	GCAGC	2 cut(s)	205, 225
BccI	CCATC	3 cut(s)	106, 193, 224
BfaI	CTAG	1 cut(s)	247
BisI	GCNGC	2 cut(s)	194, 239
BlsI	GCNGC	2 cut(s)	195, 240
BmsI	GCATC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	205, 225
BshFI	GGCC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	106
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 172, 181, 190
BstNSI	RCATGY	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	205, 225
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	105
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	7 cut(s)	57, 63, 78, 105, 184, 196, 238
CviKI_1	RGCY	7 cut(s)	57, 63, 78, 105, 184, 196, 238
Eco24I	GRGCYC	1 cut(s)	59
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	1 cut(s)	96
FaiI	YATR	4 cut(s)	12, 94, 212, 228
FatI	CATG	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	194, 239
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	2 cut(s)	194, 239
FspBI	CTAG	1 cut(s)	247
GluI	GCNGC	2 cut(s)	194, 239
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	17
HindII	GTYRAC	1 cut(s)	17
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	136, 245
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	69, 142, 175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 172, 181, 190
Hsp92II	CATG	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	5 cut(s)	45, 64, 87, 119, 161
Lsp1109I	GCAGC	2 cut(s)	205, 225
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	247
MboII	GAAGA	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	75, 172, 181, 190
NlaIII	CATG	1 cut(s)	96
NspI	RCATGY	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	195, 240
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	2 cut(s)	194, 239
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	2 cut(s)	119, 240
SfaNI	GCATC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	247
TasI	AATT	1 cut(s)	146
TseI	GCWGC	2 cut(s)	193, 238
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	96
XspI	CTAG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.