Rh5AG491300

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
83759559 .. 83763310
3752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG491300.1

Sequence Viewer

Length: 1374 bp
ATGGCCGCGCTGCTCAGAAAGGTCTGGGAATCGGTTTCGACCCGCAAGAATTCCACCTCCTCCTCCTCGTCTTCTTCTTCTTCTTCGGCGACGGTGCCGTTTCTGGGGGCGTTCGATCCTATCCCGACGGAGCTGCTGATGCAAATTGTGAGGCTGGTGGGGCCCAAGGGAGCGGCGAGGCTTCGCGTGGTGTGCAAGGCGTGGCGGTCGCTGGTGGCCGACAATGAGCTCTGGATATTCTTCTGGCAGACTCAGCAGGAGGAGGAGCTGCATTGGGAGAGCATCTTGTTCTCCGATACGCATTTGCGATCCGGTTACCATATTCAAACATTGCCTCAATTGCCTTTGATGTCTATTTATGGTCAGAGAGGCGGTGCTATTATCATCGATGGTGGCTCTGGCTACTGCAAGTTTGGTTGGGGTAAAGATGATTATCCAGCTGGGCGGTCAGCAACCTTTTTGGAATTTGGTAACGTTGAGTCTCCTATGTACTCCAGACTACACCACTTTTTTGGTACTATTTATACCAGGATGCAGGTGAAACCATATTTGCAGCCTGTGGTTGTTTCTGTTCCAATCTGTCATTATGATGATACTGAATCTGCCAAAGCATCGAGACAACAGCTCAAAGATTCCATATATAGAGTACTGTTTGACATGAATGTCCCGGCTGTTTGTGCAATTAATCAGGCAAGTTTAGCTTTATATGCAGCGAGAAGAACTTCTGGGATTGTTGTAAATATTGGCTTCCAGGTCACTTCTGTTGTTCCAATTCTAAATGGTAAAGTTATGCGGAAGGTGGGTGTAGAAGTTATTGGGTTGGGAGCATTAAAGCTTACAGGGTTCCTTAGGGAGCTGATGCAGCAGAAAAATATCAATTTTGAATCACTGTACACCATCCGGACTATAAAAGAGCAACTATGTTATGTAGCTGCTGATTATCAAGCTGAAATTTCTAAAAACACACAAGCCTCATTTGGAGAACGTCTTACAAAAGAGCGCTTTCAAACAGGAGAGATCTTATTCCAGCCACAACTTGCAGGAGTGCGTACCATGGGTTTGCACCAGGCTGTTGCTCTTTGTATGGACCATTGCCATTCGGCAGAACTAACAGGCGATGATTCTTGGTTCAAGACTGTAGTCTTGGCAGGAGGCAGTGCATGTTTACCAGGACTTGCAGGAAGATTAGAGAAGGAATTACATGGACTTCTCCCTCCATCTGTGTCCAATGGAATCACTGTCATTCCCCCTCCATTTGGTGCAGATACTGCATGGTTTGGGGCTAAAATAATCAGCAATTTGAGCACCTTCCCCGGTCCTTGGTGCGTGACAAAGAAGCAGCTCCGGCAGAAGTCAAAAGTCAAACAATGGTGA

Protein Analysis

457

Amino Acids

50.6

Weight (kDa)

9.16

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 41 - 78 1.7e-08 F-box-like
F-box PF00646 41 - 79 1.5e-07 F-box domain
Actin PF00022 202 - 306 2.2e-14 Actin
Actin PF00022 295 - 446 6.5e-16 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
AasI GACNNNNNNGTC 1 cut(s) 662
Acc36I ACCTGC 1 cut(s) 526
AccB1I GGYRCC 1 cut(s) 94
AccBSI CCGCTC 1 cut(s) 173
AccII CGCG 2 cut(s) 8, 186
AccIII TCCGGA 1 cut(s) 900
AciI CCGC 7 cut(s) 6, 43, 173, 205, 372, 445, 793
AclI AACGTT 1 cut(s) 474
AclWI GGATC 2 cut(s) 110, 303
AcoI YGGCCR 2 cut(s) 3, 216
AcsI RAATTY 3 cut(s) 49, 464, 951
AfaI GTAC 5 cut(s) 491, 517, 648, 893, 1051
AfeI AGCGCT 1 cut(s) 1001
AfiI CCNNNNNNNGG 3 cut(s) 104, 1256, 1320
AgsI TTSAA 4 cut(s) 326, 884, 1007, 1132
AjnI CCWGG 4 cut(s) 527, 750, 1065, 1168
Alw21I GWGCWC 2 cut(s) 231, 1307
Alw26I GTCTC 2 cut(s) 486, 610
AlwI GGATC 2 cut(s) 110, 303
AlwNI CAGNNNCTG 1 cut(s) 1268
Aor13HI TCCGGA 1 cut(s) 900
Aor51HI AGCGCT 1 cut(s) 1001
AoxI GGCC 3 cut(s) 3, 161, 216
ApaI GGGCCC 1 cut(s) 165
ApeKI GCWGC 8 cut(s) 10, 133, 268, 553, 710, 862, 932, 1339
ApoI RAATTY 3 cut(s) 49, 464, 951
AseI ATTAAT 1 cut(s) 684
Asp700I GAANNNNTTC 1 cut(s) 721
AspLEI GCGC 2 cut(s) 10, 1002
AspS9I GGNCC 4 cut(s) 161, 162, 1087, 1316
AsuC2I CCSGG 2 cut(s) 668, 1314
AsuHPI GGTGA 1 cut(s) 550
AvaII GGWCC 2 cut(s) 1087, 1316
AxyI CCTNAGG 1 cut(s) 848
BaeGI GKGCMC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 94
BanII GRGCYC 2 cut(s) 165, 231
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 2 cut(s) 231, 1307
BbvI GCAGC 7 cut(s) 120, 255, 565, 722, 874, 919, 1351
BccI CCATC 3 cut(s) 383, 905, 1225
BceAI ACGGC 1 cut(s) 82
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 4 cut(s) 529, 752, 1067, 1170
BcnI CCSGG 2 cut(s) 668, 1314
BcoDI GTCTC 2 cut(s) 486, 610
BfmI CTRYAG 1 cut(s) 1137
BfoI RGCGCY 1 cut(s) 1003
BfuAI ACCTGC 1 cut(s) 526
BglII AGATCT 1 cut(s) 1017
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 6 cut(s) 529, 668, 752, 1067, 1170, 1314
Bme18I GGWCC 2 cut(s) 1087, 1316
BmgT120I GGNCC 4 cut(s) 161, 162, 1087, 1316
BmiI GGNNCC 4 cut(s) 96, 162, 163, 845
BmrFI CCNGG 6 cut(s) 529, 668, 752, 1067, 1170, 1314
BmsI GCATC 5 cut(s) 129, 291, 522, 620, 849
BoxI GACNNNNGTC 1 cut(s) 1139
BpiI GAAGAC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 478
BpuMI CCSGG 2 cut(s) 668, 1314
Bsa29I ATCGAT 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 432
BsaJI CCNNGG 4 cut(s) 165, 1053, 1312, 1319
BsaWI WCCGGW 2 cut(s) 311, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 1256, 1320
Bse21I CCTNAGG 1 cut(s) 848
Bse3DI GCAATG 2 cut(s) 329, 1090
Bse8I GATNNNNATC 1 cut(s) 432
BseAI TCCGGA 1 cut(s) 900
BseBI CCWGG 4 cut(s) 529, 752, 1067, 1170
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 4 cut(s) 165, 1053, 1312, 1319
BseGI GGATG 2 cut(s) 537, 897
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 3 cut(s) 104, 1256, 1320
BseMI GCAATG 2 cut(s) 329, 1090
BseMII CTCAG 2 cut(s) 28, 266
BseRI GAGGAG 5 cut(s) 49, 52, 55, 275, 278
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 7 cut(s) 120, 255, 565, 722, 874, 919, 1351
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 1281
Bsh1236I CGCG 2 cut(s) 8, 186
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 3 cut(s) 5, 163, 218
BshNI GGYRCC 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 231, 1307
BsiSI CCGG 5 cut(s) 312, 668, 901, 1314, 1345
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 3 cut(s) 104, 1256, 1320
BsmAI GTCTC 2 cut(s) 486, 610
BsmFI GGGAC 1 cut(s) 650
BsnI GGCC 3 cut(s) 5, 163, 218
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 165, 231, 1307
Bsp13I TCCGGA 1 cut(s) 900
Bsp1407I TGTACA 1 cut(s) 891
Bsp143I GATC 3 cut(s) 115, 308, 1017
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 7 cut(s) 6, 43, 173, 205, 372, 445, 793
BspANI GGCC 3 cut(s) 5, 163, 218
BspCNI CTCAG 2 cut(s) 27, 265
BspDI ATCGAT 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 900
BspFNI CGCG 2 cut(s) 8, 186
BspLI GGNNCC 4 cut(s) 96, 162, 163, 845
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 2 cut(s) 110, 303
BspT107I GGYRCC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 329, 1090
BsrGI TGTACA 1 cut(s) 891
BssECI CCNNGG 4 cut(s) 165, 1053, 1312, 1319
BssMI GATC 3 cut(s) 115, 308, 1017
BssT1I CCWWGG 3 cut(s) 165, 1053, 1319
Bst2UI CCWGG 4 cut(s) 529, 752, 1067, 1170
Bst4CI ACNGT 5 cut(s) 94, 651, 891, 1138, 1240
BstAPI GCANNNNNTGC 1 cut(s) 1268
BstAUI TGTACA 1 cut(s) 891
BstDEI CTNAG 3 cut(s) 14, 252, 848
BstDSI CCRYGG 1 cut(s) 1053
BstEII GGTNACC 1 cut(s) 314
BstF5I GGATG 2 cut(s) 537, 897
BstFNI CGCG 2 cut(s) 8, 186
BstH2I RGCGCY 1 cut(s) 1003
BstHHI GCGC 2 cut(s) 10, 1002
BstKTI GATC 3 cut(s) 118, 311, 1020
BstMAI GTCTC 2 cut(s) 486, 610
BstMBI GATC 3 cut(s) 115, 308, 1017
BstMCI CGRYCG 1 cut(s) 209
BstNI CCWGG 4 cut(s) 529, 752, 1067, 1170
BstNSI RCATGY 1 cut(s) 1164
BstPAI GACNNNNGTC 1 cut(s) 1139
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 6 cut(s) 527, 666, 750, 1065, 1168, 1312
BstSFI CTRYAG 1 cut(s) 1137
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 2 cut(s) 8, 186
BstV1I GCAGC 7 cut(s) 120, 255, 565, 722, 874, 919, 1351
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 1017
BstXI CCANNNNNNTGG 1 cut(s) 512
BstYI RGATCY 1 cut(s) 1017
Bsu15I ATCGAT 1 cut(s) 387
Bsu36I CCTNAGG 1 cut(s) 848
BsuRI GGCC 3 cut(s) 5, 163, 218
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 1053
BtgZI GCGATG 1 cut(s) 1131
BtsCI GGATG 2 cut(s) 537, 897
BtsI GCAGTG 1 cut(s) 1162
BtsIMutI CAGTG 3 cut(s) 887, 1162, 1236
BveI ACCTGC 1 cut(s) 526
CaiI CAGNNNCTG 1 cut(s) 1268
CfoI GCGC 2 cut(s) 10, 1002
Cfr13I GGNCC 4 cut(s) 161, 162, 1087, 1316
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 5 cut(s) 490, 516, 647, 892, 1050
CviAII CATG 5 cut(s) 658, 1054, 1161, 1202, 1272
CviQI GTAC 5 cut(s) 490, 516, 647, 892, 1050
DdeI CTNAG 3 cut(s) 14, 252, 848
DpnI GATC 3 cut(s) 117, 310, 1019
DpnII GATC 3 cut(s) 115, 308, 1017
DrdI GACNNNNNNGTC 1 cut(s) 662
DseDI GACNNNNNNGTC 1 cut(s) 662
EaeI YGGCCR 2 cut(s) 3, 216
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 165, 1053, 1319
Eco24I GRGCYC 2 cut(s) 165, 231
Eco47I GGWCC 2 cut(s) 1087, 1316
Eco47III AGCGCT 1 cut(s) 1001
Eco53kI GAGCTC 1 cut(s) 229
Eco81I CCTNAGG 1 cut(s) 848
Eco91I GGTNACC 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 4 cut(s) 527, 750, 1065, 1168
EcoT14I CCWWGG 3 cut(s) 165, 1053, 1319
EcoT38I GRGCYC 2 cut(s) 165, 231
ErhI CCWWGG 3 cut(s) 165, 1053, 1319
FaeI CATG 5 cut(s) 661, 1057, 1164, 1205, 1275
FalI AAGNNNNNCTT 2 cut(s) 685, 717
FaqI GGGAC 1 cut(s) 650
FatI CATG 5 cut(s) 657, 1053, 1160, 1201, 1271
FauI CCCGC 1 cut(s) 50
FokI GGATG 2 cut(s) 544, 884
FriOI GRGCYC 2 cut(s) 165, 231
GlaI GCGC 2 cut(s) 9, 1001
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 478
HaeII RGCGCY 1 cut(s) 1003
HaeIII GGCC 3 cut(s) 5, 163, 218
HapII CCGG 5 cut(s) 312, 668, 901, 1314, 1345
HhaI GCGC 2 cut(s) 10, 1002
Hin1II CATG 5 cut(s) 661, 1057, 1164, 1205, 1275
Hin6I GCGC 2 cut(s) 8, 1000
HinP1I GCGC 2 cut(s) 8, 1000
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 8 cut(s) 29, 250, 479, 599, 632, 884, 1121, 1233
HpaII CCGG 5 cut(s) 312, 668, 901, 1314, 1345
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 894, 1166
Hpy188I TCNGA 3 cut(s) 17, 295, 366
Hpy188III TCNNGA 6 cut(s) 124, 232, 495, 615, 901, 1132
Hpy8I GTNNAC 2 cut(s) 894, 1166
Hpy99I CGWCG 2 cut(s) 94, 130
HpyAV CCTTC 3 cut(s) 790, 1186, 1318
HpyCH4III ACNGT 5 cut(s) 94, 651, 891, 1138, 1240
HpyCH4IV ACGT 2 cut(s) 474, 985
HpyF3I CTNAG 3 cut(s) 14, 252, 848
HpySE526I ACGT 2 cut(s) 474, 985
Hsp92II CATG 5 cut(s) 661, 1057, 1164, 1205, 1275
HspAI GCGC 2 cut(s) 8, 1000
Kpn2I TCCGGA 1 cut(s) 900
Kzo9I GATC 3 cut(s) 115, 308, 1017
LmnI GCTCC 6 cut(s) 130, 170, 265, 824, 853, 1347
Lsp1109I GCAGC 7 cut(s) 120, 255, 565, 722, 874, 919, 1351
LweI GCATC 5 cut(s) 129, 291, 522, 620, 849
MaeII ACGT 2 cut(s) 474, 985
MaeIII GTNAC 4 cut(s) 314, 470, 754, 1327
MalI GATC 3 cut(s) 117, 310, 1019
MbiI CCGCTC 1 cut(s) 173
MboI GATC 3 cut(s) 115, 308, 1017
MboII GAAGA 8 cut(s) 63, 66, 69, 72, 75, 232, 729, 1194
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 1 cut(s) 1017
MhlI GDGCHC 3 cut(s) 165, 231, 1307
MlyI GAGTC 2 cut(s) 244, 488
MroI TCCGGA 1 cut(s) 900
MroXI GAANNNNTTC 1 cut(s) 721
MseI TTAA 2 cut(s) 684, 830
MslI CAYNNNNRTG 1 cut(s) 588
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 5 cut(s) 312, 668, 901, 1314, 1345
MspR9I CCNGG 6 cut(s) 529, 668, 752, 1067, 1170, 1314
MunI CAATTG 1 cut(s) 338
MvaI CCWGG 4 cut(s) 529, 752, 1067, 1170
MvnI CGCG 2 cut(s) 8, 186
NciI CCSGG 2 cut(s) 668, 1314
NcoI CCATGG 1 cut(s) 1053
NdeII GATC 3 cut(s) 115, 308, 1017
NlaIII CATG 5 cut(s) 661, 1057, 1164, 1205, 1275
NlaIV GGNNCC 4 cut(s) 96, 162, 163, 845
NmuCI GTSAC 2 cut(s) 754, 1327
NspI RCATGY 1 cut(s) 1164
PaqCI CACCTGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 721
PfeI GAWTC 6 cut(s) 29, 599, 632, 884, 1121, 1233
PleI GAGTC 2 cut(s) 244, 487
PpsI GAGTC 2 cut(s) 244, 487
PshAI GACNNNNGTC 1 cut(s) 1139
PshBI ATTAAT 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 474
Psp6I CCWGG 4 cut(s) 527, 750, 1065, 1168
PspEI GGTNACC 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 4 cut(s) 527, 750, 1065, 1168
PspN4I GGNNCC 4 cut(s) 96, 162, 163, 845
PspOMI GGGCCC 1 cut(s) 161
PspPI GGNCC 4 cut(s) 161, 162, 1087, 1316
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 1017
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 5 cut(s) 491, 517, 648, 893, 1051
RsaNI GTAC 5 cut(s) 490, 516, 647, 892, 1050
RseI CAYNNNNRTG 1 cut(s) 588
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 684, 830
Sau3AI GATC 3 cut(s) 115, 308, 1017
Sau96I GGNCC 4 cut(s) 161, 162, 1087, 1316
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 2 cut(s) 244, 488
ScrFI CCNGG 6 cut(s) 529, 668, 752, 1067, 1170, 1314
SduI GDGCHC 3 cut(s) 165, 231, 1307
SfaNI GCATC 5 cut(s) 129, 291, 522, 620, 849
SfcI CTRYAG 1 cut(s) 1137
SinI GGWCC 2 cut(s) 1087, 1316
SmiMI CAYNNNNRTG 1 cut(s) 588
SsiI CCGC 7 cut(s) 6, 43, 173, 205, 372, 445, 793
SspI AATATT 1 cut(s) 742
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 6 cut(s) 527, 666, 750, 1065, 1168, 1312
StyI CCWWGG 3 cut(s) 165, 1053, 1319
TaaI ACNGT 5 cut(s) 94, 651, 891, 1138, 1240
TaiI ACGT 2 cut(s) 477, 988
TaqI TCGA 4 cut(s) 38, 114, 387, 614
TatI WGTACW 3 cut(s) 489, 646, 891
TauI GCSGC 2 cut(s) 8, 176
TfiI GAWTC 6 cut(s) 29, 599, 632, 884, 1121, 1233
Tru1I TTAA 2 cut(s) 684, 830
Tru9I TTAA 2 cut(s) 684, 830
TscAI CASTG 3 cut(s) 894, 1162, 1243
TseFI GTSAC 2 cut(s) 754, 1327
TseI GCWGC 8 cut(s) 10, 133, 268, 553, 710, 862, 932, 1339
Tsp45I GTSAC 2 cut(s) 754, 1327
TspDTI ATGAA 1 cut(s) 674
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 3 cut(s) 894, 1162, 1243
VpaK11BI GGWCC 2 cut(s) 1087, 1316
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 3 cut(s) 49, 464, 951
XceI RCATGY 1 cut(s) 1164
XmnI GAANNNNTTC 1 cut(s) 721
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.