FvH4_3g41660

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
34954992 .. 34960945
5954 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41660.t4

Sequence Viewer

Length: 1410 bp
ATGGCCGCGCTGATCAGAAAGCTCTTGGAGTCGGTAGTCTCCGCCCGCAAGAACTCGACCTCGGATTCGTCGTCCACGTCGTCGTCGTATGCGTCGTCTCTGGGGGAGCTCGATCCGATTCCGACGGAGCTGCTGATGCAGATACTGAGGCTGGTGGGGCCCAAGGAAGCGGCGAGGCTTAGCGTGGTGTGCAAGGCGTGGCGGTCGCTGGTCGCCGACGACGAGCTCTGGATGTTCTTCTGGCAGACTCAGCAGCAGCAGGAGCCGCGTTGGGAGAGCGTTTTGTTCTCCGAGACTTATCTGCGATCCGGTCCACCTATTCAACCATTGTGGAGTGAGGTGCCTCGGTTGAGTTTGATGTCTATTTATGGTCAGAGAGCGCAAGTTCCTGGCGCTATTATCATCGATGGTGGCTCTGGCTATTGCAAGTTTGGTTGGAGCAGATATGCTTGTCCATCTGGGCAGTCAGCAACCTTTCTGGAATTTGGTAACATTGAGTCTCCAATGTACTCCAGACTCCGCCATTTTTTTGGTACTATTTATAGCAGAATGCAGGTGAAACCATATATGCAGCCTGTGGTTGTTTCTATACCACTCTGTCATTATGATGATACTGAATCTGCCAAAGCATCGAGAAAGCAGCTCAAAGAAGCCATATATAGAGTATTGTTTGACATGAATGTCCCTGCTGTCTGTGCAATTAACCAGGCAACTCTAGCTTTATATGCAGCAAGAAGAACTTCTGGCATTGTTGTAAATATTGGCTTCCAGGTCACTTCTATTGTCCCAATTTTAAATGGTAAAGTAATGCGGAAGGTGGGTGTAGAAGTTACGGGATTGGGAGCATTAAAGCTTACGGGGTTCCTCAGGGAGCTGATGCAGCAGAACAATATCAATTTTGAATCACTTTACACCATCCGAACTATAAAAGAGAAACTATGTTATGTTGCTGAGGATTATGAAACTGAACTATCTAAAAACACACAAGCATCATTTGGAGCCGGCGGAGTAGGTTGGTTTACTCTTTCAAAAGAGCGTTTTCAAACAGGAGAGATCTTATTCCAGCCACGACTTGCAGGAGTGCGTACCATGGGTTTGCACCAGGCTGTCGCTCTTTGTATGGACCATTGCCATTCAGCAGAATTAACAGCCGATGATTCTTGGTTCAAGACTGTAGTCTTGGCAGGAGGCAGTGCATGTTTACCAGGACTTGCAGGGAGATTAGAGAAGGAATTGCATGGACTTCTTCCTCCATCTGTGTCCAATGGAATCACTGTCGTTCCCCCTCCATTTGGTGCAGATACTGCATGGTTTGGGGCTAAACTAATCAGCAATTTGAGCACCTTCCCTGGTCCTTGGTGCATGACAAAGAAGCAGTTCCGGCAGAAGTCTAAAGTCAAACTATGGTGA

Protein Analysis

470

Amino Acids

51.98

Weight (kDa)

9.11

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 40 - 78 3.8e-11 F-box-like
F-box PF00646 40 - 77 1.7e-09 F-box domain
Actin PF00022 205 - 306 1.4e-13 Actin
Actin PF00022 301 - 460 4e-17 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 544
AasI GACNNNNNNGTC 1 cut(s) 680
Acc36I ACCTGC 1 cut(s) 544
AccB1I GGYRCC 1 cut(s) 340
AccII CGCG 2 cut(s) 8, 268
AciI CCGC 9 cut(s) 6, 42, 46, 170, 202, 266, 520, 811, 1005
AclWI GGATC 2 cut(s) 107, 300
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 482
AfaI GTAC 3 cut(s) 509, 535, 1087
AfiI CCNNNNNNNGG 1 cut(s) 1292
AgsI TTSAA 5 cut(s) 323, 902, 1029, 1043, 1168
AjiI CACGTC 1 cut(s) 78
AjnI CCWGG 6 cut(s) 388, 705, 768, 1101, 1204, 1348
AluBI AGCT 8 cut(s) 22, 109, 130, 226, 643, 719, 853, 874
AluI AGCT 8 cut(s) 22, 109, 130, 226, 643, 719, 853, 874
Alw21I GWGCWC 3 cut(s) 111, 228, 1343
Alw26I GTCTC 4 cut(s) 43, 102, 287, 504
AlwI GGATC 2 cut(s) 107, 300
AlwNI CAGNNNCTG 2 cut(s) 145, 1304
AoxI GGCC 2 cut(s) 3, 158
ApaI GGGCCC 1 cut(s) 162
ApeKI GCWGC 7 cut(s) 130, 253, 256, 571, 640, 728, 880
ApoI RAATTY 1 cut(s) 482
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
Asp700I GAANNNNTTC 2 cut(s) 739, 1376
AspLEI GCGC 3 cut(s) 10, 382, 395
AspS9I GGNCC 5 cut(s) 158, 159, 311, 1123, 1352
AsuHPI GGTGA 1 cut(s) 568
AvaII GGWCC 3 cut(s) 311, 1123, 1352
AxyI CCTNAGG 1 cut(s) 866
BaeGI GKGCMC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 3 cut(s) 111, 162, 228
Bbv12I GWGCWC 3 cut(s) 111, 228, 1343
BbvCI CCTCAGC 1 cut(s) 951
BbvI GCAGC 7 cut(s) 117, 265, 268, 583, 652, 740, 892
BccI CCATC 4 cut(s) 401, 463, 923, 1261
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 4 cut(s) 43, 102, 287, 504
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 1 cut(s) 1173
BfoI RGCGCY 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 544
BglII AGATCT 1 cut(s) 1053
BlpI GCTNAGC 1 cut(s) 179
Bme1390I CCNGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
Bme18I GGWCC 3 cut(s) 311, 1123, 1352
BmgBI CACGTC 1 cut(s) 78
BmgT120I GGNCC 5 cut(s) 158, 159, 311, 1123, 1352
BmiI GGNNCC 6 cut(s) 159, 160, 264, 342, 863, 1000
BmrFI CCNGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
BmsI GCATC 4 cut(s) 126, 638, 867, 998
BoxI GACNNNNGTC 1 cut(s) 1175
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 951
Bpu1102I GCTNAGC 1 cut(s) 179
Bsa29I ATCGAT 1 cut(s) 405
BsaJI CCNNGG 6 cut(s) 60, 162, 344, 1089, 1348, 1355
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 1292
Bse118I RCCGGY 1 cut(s) 1001
Bse21I CCTNAGG 1 cut(s) 866
Bse3DI GCAATG 1 cut(s) 1126
BseBI CCWGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 6 cut(s) 60, 162, 344, 1089, 1348, 1355
BseGI GGATG 2 cut(s) 237, 915
BseLI CCNNNNNNNGG 1 cut(s) 1292
BseMI GCAATG 1 cut(s) 1126
BseMII CTCAG 4 cut(s) 137, 263, 880, 942
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 7 cut(s) 117, 265, 268, 583, 652, 740, 892
BsgI GTGCAG 1 cut(s) 1317
Bsh1236I CGCG 2 cut(s) 8, 268
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 5, 160
BshNI GGYRCC 1 cut(s) 340
BshVI ATCGAT 1 cut(s) 405
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 3 cut(s) 111, 228, 1343
BsiSI CCGG 3 cut(s) 309, 1002, 1381
BslFI GGGAC 2 cut(s) 668, 770
BslI CCNNNNNNNGG 1 cut(s) 1292
BsmAI GTCTC 4 cut(s) 43, 102, 287, 504
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 2 cut(s) 668, 770
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 2 cut(s) 5, 160
Bsp120I GGGCCC 1 cut(s) 158
Bsp1286I GDGCHC 4 cut(s) 111, 162, 228, 1343
Bsp143I GATC 4 cut(s) 12, 112, 305, 1053
Bsp1720I GCTNAGC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 1089
BspACI CCGC 9 cut(s) 6, 42, 46, 170, 202, 266, 520, 811, 1005
BspANI GGCC 2 cut(s) 5, 160
BspCNI CTCAG 4 cut(s) 138, 262, 879, 943
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 2 cut(s) 8, 268
BspLI GGNNCC 6 cut(s) 159, 160, 264, 342, 863, 1000
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 2 cut(s) 107, 300
BspT107I GGYRCC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 1126
BsrFI RCCGGY 1 cut(s) 1001
BssAI RCCGGY 1 cut(s) 1001
BssECI CCNNGG 6 cut(s) 60, 162, 344, 1089, 1348, 1355
BssMI GATC 4 cut(s) 12, 112, 305, 1053
BssT1I CCWWGG 3 cut(s) 162, 1089, 1355
Bst2UI CCWGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
Bst4CI ACNGT 2 cut(s) 1174, 1276
BstAPI GCANNNNNTGC 1 cut(s) 1304
BstC8I GCNNGC 2 cut(s) 46, 1003
BstDEI CTNAG 5 cut(s) 146, 179, 249, 866, 951
BstDSI CCRYGG 1 cut(s) 1089
BstF5I GGATG 2 cut(s) 237, 915
BstFNI CGCG 2 cut(s) 8, 268
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 3 cut(s) 10, 382, 395
BstKTI GATC 4 cut(s) 15, 115, 308, 1056
BstMAI GTCTC 4 cut(s) 43, 102, 287, 504
BstMBI GATC 4 cut(s) 12, 112, 305, 1053
BstMCI CGRYCG 1 cut(s) 206
BstNI CCWGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
BstNSI RCATGY 1 cut(s) 1200
BstPAI GACNNNNGTC 1 cut(s) 1175
BstSCI CCNGG 6 cut(s) 388, 705, 768, 1101, 1204, 1348
BstSFI CTRYAG 1 cut(s) 1173
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 2 cut(s) 8, 268
BstV1I GCAGC 7 cut(s) 117, 265, 268, 583, 652, 740, 892
BstX2I RGATCY 1 cut(s) 1053
BstXI CCANNNNNNTGG 1 cut(s) 530
BstYI RGATCY 1 cut(s) 1053
Bsu15I ATCGAT 1 cut(s) 405
Bsu36I CCTNAGG 1 cut(s) 866
BsuRI GGCC 2 cut(s) 5, 160
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 1 cut(s) 1089
BtrI CACGTC 1 cut(s) 78
BtsCI GGATG 2 cut(s) 237, 915
BtsI GCAGTG 1 cut(s) 1198
BtsIMutI CAGTG 2 cut(s) 1198, 1272
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 46, 1003
CaiI CAGNNNCTG 2 cut(s) 145, 1304
CfoI GCGC 3 cut(s) 10, 382, 395
Cfr10I RCCGGY 1 cut(s) 1001
Cfr13I GGNCC 5 cut(s) 158, 159, 311, 1123, 1352
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 81
Csp6I GTAC 3 cut(s) 508, 534, 1086
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 6 cut(s) 676, 1090, 1197, 1238, 1308, 1363
CviQI GTAC 3 cut(s) 508, 534, 1086
DdeI CTNAG 5 cut(s) 146, 179, 249, 866, 951
DpnI GATC 4 cut(s) 14, 114, 307, 1055
DpnII GATC 4 cut(s) 12, 112, 305, 1053
DraI TTTAAA 1 cut(s) 795
DrdI GACNNNNNNGTC 1 cut(s) 680
DseDI GACNNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 3 cut(s) 31, 509, 1020
Ecl136II GAGCTC 2 cut(s) 109, 226
Eco130I CCWWGG 3 cut(s) 162, 1089, 1355
Eco24I GRGCYC 3 cut(s) 111, 162, 228
Eco47I GGWCC 3 cut(s) 311, 1123, 1352
Eco53kI GAGCTC 2 cut(s) 109, 226
Eco81I CCTNAGG 1 cut(s) 866
EcoICRI GAGCTC 2 cut(s) 109, 226
EcoO109I RGGNCCY 1 cut(s) 158
EcoRII CCWGG 6 cut(s) 388, 705, 768, 1101, 1204, 1348
EcoT14I CCWWGG 3 cut(s) 162, 1089, 1355
EcoT38I GRGCYC 3 cut(s) 111, 162, 228
ErhI CCWWGG 3 cut(s) 162, 1089, 1355
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 6 cut(s) 679, 1093, 1200, 1241, 1311, 1366
FalI AAGNNNNNCTT 2 cut(s) 724, 756
FaqI GGGAC 2 cut(s) 668, 770
FatI CATG 6 cut(s) 675, 1089, 1196, 1237, 1307, 1362
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 12
FokI GGATG 2 cut(s) 244, 902
FriOI GRGCYC 3 cut(s) 111, 162, 228
FspBI CTAG 1 cut(s) 716
GlaI GCGC 3 cut(s) 9, 381, 394
GsuI CTGGAG 1 cut(s) 496
HaeII RGCGCY 1 cut(s) 396
HaeIII GGCC 2 cut(s) 5, 160
HapII CCGG 3 cut(s) 309, 1002, 1381
HgaI GACGC 1 cut(s) 81
HhaI GCGC 3 cut(s) 10, 382, 395
Hin1II CATG 6 cut(s) 679, 1093, 1200, 1241, 1311, 1366
Hin6I GCGC 3 cut(s) 8, 380, 393
HinP1I GCGC 3 cut(s) 8, 380, 393
HindIII AAGCTT 1 cut(s) 851
HpaII CCGG 3 cut(s) 309, 1002, 1381
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 4 cut(s) 75, 314, 1020, 1202
Hpy188I TCNGA 7 cut(s) 17, 64, 117, 123, 292, 375, 920
Hpy188III TCNNGA 5 cut(s) 229, 479, 513, 633, 1168
Hpy8I GTNNAC 4 cut(s) 75, 314, 1020, 1202
Hpy99I CGWCG 8 cut(s) 73, 82, 85, 88, 97, 127, 221, 224
HpyAV CCTTC 3 cut(s) 808, 1222, 1354
HpyCH4III ACNGT 2 cut(s) 1174, 1276
HpyCH4IV ACGT 1 cut(s) 77
HpyF3I CTNAG 5 cut(s) 146, 179, 249, 866, 951
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 6 cut(s) 679, 1093, 1200, 1241, 1311, 1366
HspAI GCGC 3 cut(s) 8, 380, 393
KroI GCCGGC 1 cut(s) 1001
KroNI GCCGGC 1 cut(s) 1003
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 4 cut(s) 12, 112, 305, 1053
LmnI GCTCC 7 cut(s) 106, 127, 262, 438, 842, 871, 998
Lsp1109I GCAGC 7 cut(s) 117, 265, 268, 583, 652, 740, 892
LweI GCATC 4 cut(s) 126, 638, 867, 998
MaeI CTAG 1 cut(s) 716
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 3 cut(s) 488, 772, 829
MalI GATC 4 cut(s) 14, 114, 307, 1055
MboI GATC 4 cut(s) 12, 112, 305, 1053
MboII GAAGA 3 cut(s) 229, 747, 1238
MflI RGATCY 1 cut(s) 1053
MhlI GDGCHC 4 cut(s) 111, 162, 228, 1343
MluCI AATT 7 cut(s) 482, 699, 789, 895, 1142, 1232, 1333
MlyI GAGTC 4 cut(s) 38, 241, 506, 510
MmeI TCCRAC 2 cut(s) 146, 416
MroNI GCCGGC 1 cut(s) 1001
MroXI GAANNNNTTC 2 cut(s) 739, 1376
MseI TTAA 4 cut(s) 702, 794, 848, 1145
MslI CAYNNNNRTG 1 cut(s) 606
MspI CCGG 3 cut(s) 309, 1002, 1381
MspR9I CCNGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
MvnI CGCG 2 cut(s) 8, 268
NaeI GCCGGC 1 cut(s) 1003
NcoI CCATGG 1 cut(s) 1089
NdeII GATC 4 cut(s) 12, 112, 305, 1053
NgoMIV GCCGGC 1 cut(s) 1001
NlaIII CATG 6 cut(s) 679, 1093, 1200, 1241, 1311, 1366
NlaIV GGNNCC 6 cut(s) 159, 160, 264, 342, 863, 1000
NmuCI GTSAC 1 cut(s) 772
NspI RCATGY 1 cut(s) 1200
PaqCI CACCTGC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 7 cut(s) 68, 74, 77, 83, 89, 92, 219
PctI GAATGC 1 cut(s) 555
PdiI GCCGGC 1 cut(s) 1003
PdmI GAANNNNTTC 2 cut(s) 739, 1376
PfeI GAWTC 6 cut(s) 65, 118, 617, 902, 1157, 1269
PleI GAGTC 4 cut(s) 37, 241, 505, 510
PpsI GAGTC 4 cut(s) 37, 241, 505, 510
PshAI GACNNNNGTC 1 cut(s) 1175
Psp124BI GAGCTC 2 cut(s) 111, 228
Psp6I CCWGG 6 cut(s) 388, 705, 768, 1101, 1204, 1348
PspGI CCWGG 6 cut(s) 388, 705, 768, 1101, 1204, 1348
PspN4I GGNNCC 6 cut(s) 159, 160, 264, 342, 863, 1000
PspOMI GGGCCC 1 cut(s) 158
PspPI GGNCC 5 cut(s) 158, 159, 311, 1123, 1352
PstNI CAGNNNCTG 2 cut(s) 145, 1304
PsuI RGATCY 1 cut(s) 1053
RsaI GTAC 3 cut(s) 509, 535, 1087
RsaNI GTAC 3 cut(s) 508, 534, 1086
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 2 cut(s) 111, 228
SaqAI TTAA 4 cut(s) 702, 794, 848, 1145
Sau3AI GATC 4 cut(s) 12, 112, 305, 1053
Sau96I GGNCC 5 cut(s) 158, 159, 311, 1123, 1352
SchI GAGTC 4 cut(s) 38, 241, 506, 510
ScrFI CCNGG 6 cut(s) 390, 707, 770, 1103, 1206, 1350
SduI GDGCHC 4 cut(s) 111, 162, 228, 1343
SfaNI GCATC 4 cut(s) 126, 638, 867, 998
SfcI CTRYAG 1 cut(s) 1173
SinI GGWCC 3 cut(s) 311, 1123, 1352
SmiMI CAYNNNNRTG 1 cut(s) 606
Sse9I AATT 7 cut(s) 482, 699, 789, 895, 1142, 1232, 1333
SsiI CCGC 9 cut(s) 6, 42, 46, 170, 202, 266, 520, 811, 1005
SspI AATATT 1 cut(s) 760
SspMI CTAG 1 cut(s) 716
SstI GAGCTC 2 cut(s) 111, 228
StyD4I CCNGG 6 cut(s) 388, 705, 768, 1101, 1204, 1348
StyI CCWWGG 3 cut(s) 162, 1089, 1355
TaaI ACNGT 2 cut(s) 1174, 1276
TaiI ACGT 1 cut(s) 80
TaqI TCGA 4 cut(s) 56, 111, 405, 632
TasI AATT 7 cut(s) 482, 699, 789, 895, 1142, 1232, 1333
TatI WGTACW 1 cut(s) 507
TauI GCSGC 3 cut(s) 8, 173, 268
TfiI GAWTC 6 cut(s) 65, 118, 617, 902, 1157, 1269
Tru1I TTAA 4 cut(s) 702, 794, 848, 1145
Tru9I TTAA 4 cut(s) 702, 794, 848, 1145
TscAI CASTG 2 cut(s) 1198, 1279
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 7 cut(s) 130, 253, 256, 571, 640, 728, 880
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 2 cut(s) 692, 975
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 1198, 1279
VpaK11BI GGWCC 3 cut(s) 311, 1123, 1352
XapI RAATTY 1 cut(s) 482
XceI RCATGY 1 cut(s) 1200
XmnI GAANNNNTTC 2 cut(s) 739, 1376
XspI CTAG 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.