MD03G1042500.v1.1

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
3329555 .. 3335617
6063 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1042500.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGACGACGTTGATCAGAAAAGCGTGGGAGTTGGTGTCGAGCCGCACGTTTTCAAGTTCAGAGTCAACGTCGTCGTCGTCTTCTTCGAGCTCGCCGTCGGCGACGGCAGGTTCCGGGACGTTCAATCGGCTGCCGACGGACCTAATGATGAAAATCGTGAGACTAGTGGGGCCTAAGGAAGCGGCGAAGTTGAGCGTCGTATGCAGAGCGTGGCGGTGCGTCGTCTCCGAGAACGAGCTGTGGATTTTCTTTCTGCAGAAGCAGGAGGAGGAGACTTATTGGGAATCCTTTGTTTTCTCGGAAACCCATTTGAGATTCGGATACCCACTTCAAACATTCTCGGGCGAGAGTCCCCAATTGTCCTATATGGGTATTTATAGTCAACGAGTTCAAGTTCCTGGTTCTGCTATCATTGACGGGGGGTCTGGCTATTGCAAGTTTGGCTGGAGCAAATACGCATGTCCATCGGGCCGGTCAGCAACTTTTTTGGAATTTGGTAATGTTGAGTCGCCGATGTACTCTAGACTCCACCATTTTTTTGTGACTATTTATAGCAGGATGCAGGTGAAACCATCTTCGCAGCCCGTGGTTTTGTCTATACCTATTTGCCATTATGATGATACTGAATCTGCCAAAGCATCGAGACGGCAGCTCAAAGAAGCTATGTACAGGGTACTTTTTGACATGAATGTCCCTGCTGTCTGTGCCATTAATCAGGCAACTTTAGCTTTGTATGCAGCAAGAAAAACTTCAGGGATTGTTGTAAACATCGGTTTCCAAGTCACTTCTATTGTTCCAATTCTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAGGTTATGGGATTGGGAGCACTGAAGCTTACAGGGTTCCTTAGGGAGCTATTGCACAGGAACAATATCAATTTTGACTCACTGTACACTGTTCAGACTGTGAAAGAGAAACTATGTTACGTTGCTGAGGATTATGAAGCTGAGCTATCTAAAAATACACAAGCTTCATTTGTATCTGGTGGAGAAGAATGTTTTACTGTTTCAAAGGAGCAGTTTCAAACAGGAGAGATCTTATTCCAGCCACAGCTTGCAGGACTGGATACCATGAGCTTGCATCAGGCTGTTGCTCTTTGTATGGAACATTGCCATTCGGCAGAACTAACAGGAGACAATGCTTGGTTCAAGACAGTAGTTTTGTCAGGAGGCACTGCATGTTTACCAGGACTCGCAGGAAGGTTAGAGAAGGAATTACACGGAGTTCTCCCTCCATATCTGTCTGATGGAATCACAGTCATTCCCCCTCCATATGGTGCAGATACAGCATGGTTTGGGGCTAAGATCATCAGCAATCTGAGCACCTTCCCTGGCCCTTGGTGCGTGACAAAGAAGCAGTTCCGGTACAAGTCCAGAATCAAGCTTATGTGGTGA

Protein Analysis

474

Amino Acids

52.47

Weight (kDa)

8.6

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 41 - 82 2.7e-08 F-box-like
F-box PF00646 42 - 82 6.7e-08 F-box domain
Actin PF00022 182 - 463 4.6e-30 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
AasI GACNNNNNNGTC 1 cut(s) 689
Acc16I TGCGCA 1 cut(s) 821
Acc36I ACCTGC 2 cut(s) 98, 553
AciI CCGC 3 cut(s) 43, 182, 214
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 2 cut(s) 735, 878
AfaI GTAC 5 cut(s) 518, 668, 675, 920, 1394
AfiI CCNNNNNNNGG 1 cut(s) 1301
AgsI TTSAA 7 cut(s) 54, 124, 332, 392, 1038, 1052, 1177
AhdI GACNNNNNGTC 1 cut(s) 421
AhlI ACTAGT 1 cut(s) 163
AjnI CCWGG 3 cut(s) 397, 1213, 1357
Alw21I GWGCWC 3 cut(s) 92, 856, 1352
Alw26I GTCTC 5 cut(s) 154, 229, 266, 637, 1155
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 3 cut(s) 170, 469, 1360
ApeKI GCWGC 4 cut(s) 130, 580, 649, 737
ApoI RAATTY 1 cut(s) 491
ArsI GACNNNNNNTTYG 2 cut(s) 1171, 1203
AseI ATTAAT 1 cut(s) 711
Asp700I GAANNNNTTC 2 cut(s) 748, 1385
AspLEI GCGC 1 cut(s) 822
AspS9I GGNCC 4 cut(s) 139, 170, 469, 1361
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 139
AxyI CCTNAGG 2 cut(s) 174, 875
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 3 cut(s) 92, 856, 1352
BbvCI CCTCAGC 1 cut(s) 960
BbvI GCAGC 4 cut(s) 117, 592, 661, 749
BccI CCATC 3 cut(s) 472, 580, 1268
BceAI ACGGC 3 cut(s) 79, 120, 662
BcgI CGANNNNNNTGC 2 cut(s) 447, 481
BciT130I CCWGG 3 cut(s) 399, 1215, 1359
BciVI GTATCC 2 cut(s) 314, 1087
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 5 cut(s) 154, 229, 266, 637, 1155
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 2 cut(s) 164, 522
BfmI CTRYAG 1 cut(s) 254
BfuAI ACCTGC 2 cut(s) 98, 553
BfuI GTATCC 2 cut(s) 314, 1087
BglII AGATCT 1 cut(s) 1062
BisI GCNGC 6 cut(s) 43, 131, 183, 581, 650, 738
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 6 cut(s) 44, 132, 184, 582, 651, 739
Bme1390I CCNGG 4 cut(s) 115, 399, 1215, 1359
Bme18I GGWCC 1 cut(s) 139
BmeRI GACNNNNNGTC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 4 cut(s) 139, 170, 469, 1361
BmiI GGNNCC 3 cut(s) 112, 171, 872
BmrFI CCNGG 4 cut(s) 115, 399, 1215, 1359
BmsI GCATC 3 cut(s) 549, 647, 1117
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 960
Bpu1102I GCTNAGC 1 cut(s) 975
BpuMI CCSGG 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 585, 1357, 1364
BsaWI WCCGGW 1 cut(s) 1389
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 1301
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 1 cut(s) 1095
Bse21I CCTNAGG 2 cut(s) 174, 875
Bse3DI GCAATG 1 cut(s) 1135
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 3 cut(s) 399, 1215, 1359
BseDI CCNNGG 3 cut(s) 585, 1357, 1364
BseGI GGATG 1 cut(s) 564
BseJI GATNNNNATC 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 1301
BseMI GCAATG 1 cut(s) 1135
BseMII CTCAG 3 cut(s) 951, 966, 1337
BseNI ACTGG 1 cut(s) 1095
BseRI GAGGAG 2 cut(s) 281, 284
BseXI GCAGC 4 cut(s) 117, 592, 661, 749
BsgI GTGCAG 1 cut(s) 1326
BshFI GGCC 3 cut(s) 172, 471, 1362
BsiHKAI GWGCWC 3 cut(s) 92, 856, 1352
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 3 cut(s) 114, 472, 1390
BslFI GGGAC 3 cut(s) 130, 336, 677
BslI CCNNNNNNNGG 1 cut(s) 1301
BsmAI GTCTC 5 cut(s) 154, 229, 266, 637, 1155
BsmBI CGTCTC 2 cut(s) 229, 637
BsmFI GGGAC 3 cut(s) 130, 336, 677
BsnI GGCC 3 cut(s) 172, 471, 1362
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 3 cut(s) 92, 856, 1352
Bsp1407I TGTACA 2 cut(s) 666, 918
Bsp143I GATC 3 cut(s) 12, 1062, 1332
Bsp1720I GCTNAGC 1 cut(s) 975
BspACI CCGC 3 cut(s) 43, 182, 214
BspANI GGCC 3 cut(s) 172, 471, 1362
BspCNI CTCAG 3 cut(s) 952, 967, 1338
BspLI GGNNCC 3 cut(s) 112, 171, 872
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 2 cut(s) 98, 553
BsrDI GCAATG 1 cut(s) 1135
BsrFI RCCGGY 1 cut(s) 471
BsrGI TGTACA 2 cut(s) 666, 918
BsrI ACTGG 1 cut(s) 1095
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 3 cut(s) 585, 1357, 1364
BssMI GATC 3 cut(s) 12, 1062, 1332
BssT1I CCWWGG 1 cut(s) 1364
Bst2UI CCWGG 3 cut(s) 399, 1215, 1359
Bst4CI ACNGT 6 cut(s) 918, 925, 934, 1033, 1183, 1285
BstAUI TGTACA 2 cut(s) 666, 918
BstC8I GCNNGC 3 cut(s) 92, 1083, 1106
BstDEI CTNAG 6 cut(s) 174, 875, 960, 975, 1329, 1346
BstDSI CCRYGG 1 cut(s) 585
BstF5I GGATG 1 cut(s) 564
BstHHI GCGC 1 cut(s) 822
BstKTI GATC 3 cut(s) 15, 1065, 1335
BstMAI GTCTC 5 cut(s) 154, 229, 266, 637, 1155
BstMBI GATC 3 cut(s) 12, 1062, 1332
BstMWI GCNNNNNNNGC 8 cut(s) 201, 441, 704, 725, 734, 1313, 1347, 1368
BstNI CCWGG 3 cut(s) 399, 1215, 1359
BstNSI RCATGY 2 cut(s) 462, 1209
BstSCI CCNGG 4 cut(s) 113, 397, 1213, 1357
BstSFI CTRYAG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 117, 592, 661, 749
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 1062
Bsu36I CCTNAGG 2 cut(s) 174, 875
BsuI GTATCC 2 cut(s) 314, 1087
BsuRI GGCC 3 cut(s) 172, 471, 1362
BtgI CCRYGG 1 cut(s) 585
BtsCI GGATG 1 cut(s) 564
BtsI GCAGTG 1 cut(s) 1200
BtsIMutI CAGTG 4 cut(s) 854, 914, 921, 1200
BveI ACCTGC 2 cut(s) 98, 553
Cac8I GCNNGC 3 cut(s) 92, 1083, 1106
CfoI GCGC 1 cut(s) 822
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 4 cut(s) 139, 170, 469, 1361
CseI GACGC 2 cut(s) 184, 208
Csp6I GTAC 5 cut(s) 517, 667, 674, 919, 1393
CviAII CATG 5 cut(s) 459, 685, 1099, 1206, 1317
CviQI GTAC 5 cut(s) 517, 667, 674, 919, 1393
DdeI CTNAG 6 cut(s) 174, 875, 960, 975, 1329, 1346
DpnI GATC 3 cut(s) 14, 1064, 1334
DpnII GATC 3 cut(s) 12, 1062, 1332
DrdI GACNNNNNNGTC 1 cut(s) 689
DriI GACNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 689
Eam1105I GACNNNNNGTC 1 cut(s) 421
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 1364
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 735, 878
Eco81I CCTNAGG 2 cut(s) 174, 875
Eco88I CYCGRG 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 397, 1213, 1357
EcoT14I CCWWGG 1 cut(s) 1364
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 1364
Esp3I CGTCTC 2 cut(s) 229, 637
FaeI CATG 5 cut(s) 462, 688, 1102, 1209, 1320
FalI AAGNNNNNCTT 2 cut(s) 733, 765
FaqI GGGAC 3 cut(s) 130, 336, 677
FatI CATG 5 cut(s) 458, 684, 1098, 1205, 1316
FauNDI CATATG 1 cut(s) 1300
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 43, 131, 183, 581, 650, 738
FokI GGATG 1 cut(s) 571
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 6 cut(s) 43, 131, 183, 581, 650, 738
FspBI CTAG 2 cut(s) 164, 522
FspI TGCGCA 1 cut(s) 821
GlaI GCGC 1 cut(s) 821
GluI GCNGC 6 cut(s) 43, 131, 183, 581, 650, 738
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 3 cut(s) 172, 471, 1362
HapII CCGG 3 cut(s) 114, 472, 1390
HgaI GACGC 2 cut(s) 184, 208
HhaI GCGC 1 cut(s) 822
Hin1II CATG 5 cut(s) 462, 688, 1102, 1209, 1320
Hin6I GCGC 1 cut(s) 820
HinP1I GCGC 1 cut(s) 820
HincII GTYRAC 2 cut(s) 66, 383
HindII GTYRAC 2 cut(s) 66, 383
HindIII AAGCTT 3 cut(s) 860, 996, 1409
HpaII CCGG 3 cut(s) 114, 472, 1390
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 5 cut(s) 66, 383, 766, 921, 1211
Hpy188I TCNGA 8 cut(s) 17, 61, 229, 301, 320, 930, 1273, 1347
Hpy188III TCNNGA 6 cut(s) 157, 522, 642, 1177, 1194, 1401
Hpy8I GTNNAC 5 cut(s) 66, 383, 766, 921, 1211
Hpy99I CGWCG 9 cut(s) 10, 73, 76, 79, 100, 106, 139, 200, 224
HpyAV CCTTC 3 cut(s) 1221, 1231, 1363
HpyCH4III ACNGT 6 cut(s) 918, 925, 934, 1033, 1183, 1285
HpyCH4IV ACGT 5 cut(s) 8, 47, 68, 119, 954
HpyF10VI GCNNNNNNNGC 8 cut(s) 201, 441, 704, 725, 734, 1313, 1347, 1368
HpyF3I CTNAG 6 cut(s) 174, 875, 960, 975, 1329, 1346
HpySE526I ACGT 5 cut(s) 8, 47, 68, 119, 954
Hsp92II CATG 5 cut(s) 462, 688, 1102, 1209, 1320
HspAI GCGC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 3 cut(s) 12, 1062, 1332
LmnI GCTCC 4 cut(s) 447, 851, 880, 1042
Lsp1109I GCAGC 4 cut(s) 117, 592, 661, 749
LweI GCATC 3 cut(s) 549, 647, 1117
MaeI CTAG 2 cut(s) 164, 522
MaeII ACGT 5 cut(s) 8, 47, 68, 119, 954
MaeIII GTNAC 4 cut(s) 541, 781, 950, 1372
MalI GATC 3 cut(s) 14, 1064, 1334
MboI GATC 3 cut(s) 12, 1062, 1332
MboII GAAGA 4 cut(s) 72, 75, 567, 1031
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 1062
MhlI GDGCHC 3 cut(s) 92, 856, 1352
MluCI AATT 5 cut(s) 356, 491, 798, 904, 1241
MlyI GAGTC 6 cut(s) 71, 358, 515, 519, 905, 1212
MnlI CCTC 7 cut(s) 259, 262, 829, 955, 1190, 1269, 1305
MroXI GAANNNNTTC 2 cut(s) 748, 1385
MseI TTAA 1 cut(s) 711
MslI CAYNNNNRTG 1 cut(s) 615
MspI CCGG 3 cut(s) 114, 472, 1390
MspR9I CCNGG 4 cut(s) 115, 399, 1215, 1359
MunI CAATTG 1 cut(s) 356
MvaI CCWGG 3 cut(s) 399, 1215, 1359
MwoI GCNNNNNNNGC 8 cut(s) 201, 441, 704, 725, 734, 1313, 1347, 1368
NciI CCSGG 1 cut(s) 115
NdeI CATATG 1 cut(s) 1300
NdeII GATC 3 cut(s) 12, 1062, 1332
NlaIII CATG 5 cut(s) 462, 688, 1102, 1209, 1320
NlaIV GGNNCC 3 cut(s) 112, 171, 872
NmuCI GTSAC 3 cut(s) 541, 781, 1372
NsbI TGCGCA 1 cut(s) 821
NspI RCATGY 2 cut(s) 462, 1209
PaqCI CACCTGC 1 cut(s) 553
PcsI WCGNNNNNNNCGW 5 cut(s) 44, 74, 83, 92, 98
PdmI GAANNNNTTC 2 cut(s) 748, 1385
PfeI GAWTC 5 cut(s) 284, 315, 626, 1278, 1404
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 6 cut(s) 44, 132, 184, 582, 651, 739
PleI GAGTC 6 cut(s) 70, 357, 514, 519, 905, 1212
PpsI GAGTC 6 cut(s) 70, 357, 514, 519, 905, 1212
PshBI ATTAAT 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 92
Psp6I CCWGG 3 cut(s) 397, 1213, 1357
PspGI CCWGG 3 cut(s) 397, 1213, 1357
PspN4I GGNNCC 3 cut(s) 112, 171, 872
PspPI GGNCC 4 cut(s) 139, 170, 469, 1361
PstI CTGCAG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 1062
RsaI GTAC 5 cut(s) 518, 668, 675, 920, 1394
RsaNI GTAC 5 cut(s) 517, 667, 674, 919, 1393
RseI CAYNNNNRTG 1 cut(s) 615
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 711
SatI GCNGC 6 cut(s) 43, 131, 183, 581, 650, 738
Sau3AI GATC 3 cut(s) 12, 1062, 1332
Sau96I GGNCC 4 cut(s) 139, 170, 469, 1361
SchI GAGTC 6 cut(s) 71, 358, 515, 519, 905, 1212
ScrFI CCNGG 4 cut(s) 115, 399, 1215, 1359
SduI GDGCHC 3 cut(s) 92, 856, 1352
SfaNI GCATC 3 cut(s) 549, 647, 1117
SfcI CTRYAG 1 cut(s) 254
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 615
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 5 cut(s) 356, 491, 798, 904, 1241
SsiI CCGC 3 cut(s) 43, 182, 214
SspMI CTAG 2 cut(s) 164, 522
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 4 cut(s) 113, 397, 1213, 1357
StyI CCWWGG 1 cut(s) 1364
TaaI ACNGT 6 cut(s) 918, 925, 934, 1033, 1183, 1285
TaiI ACGT 5 cut(s) 11, 50, 71, 122, 957
TaqI TCGA 3 cut(s) 38, 86, 641
TasI AATT 5 cut(s) 356, 491, 798, 904, 1241
TatI WGTACW 3 cut(s) 516, 666, 918
TauI GCSGC 2 cut(s) 45, 185
TfiI GAWTC 5 cut(s) 284, 315, 626, 1278, 1404
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TscAI CASTG 4 cut(s) 861, 921, 928, 1207
TseFI GTSAC 3 cut(s) 541, 781, 1372
TseI GCWGC 4 cut(s) 130, 580, 649, 737
Tsp45I GTSAC 3 cut(s) 541, 781, 1372
TspDTI ATGAA 4 cut(s) 164, 701, 984, 990
TspGWI ACGGA 2 cut(s) 152, 1263
TspRI CASTG 4 cut(s) 861, 921, 928, 1207
VpaK11BI GGWCC 1 cut(s) 139
VspI ATTAAT 1 cut(s) 711
XapI RAATTY 1 cut(s) 491
XbaI TCTAGA 1 cut(s) 521
XceI RCATGY 2 cut(s) 462, 1209
XmnI GAANNNNTTC 2 cut(s) 748, 1385
XspI CTAG 2 cut(s) 164, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.