Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000909.1

Orthogroup ID

OG0004753

Physical Location & Seq

Genomic Coordinates Reverse (-)

70782 .. 73131

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000909.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgcaggtgaaaccatatttgcagcctgtggttgtttctattccaatctgtcattatgatgatactgaatctgccaaagcatcgagacaacagctcaaagatgccatatatagagtactgtttgacatgaatgtcccggctgtttgtgcaattaatcaggcaagtttagctttatatgcagcgaaaagaacttctgggattgttgtaaatattggcttccaggtcacttctgttgttccaattctaaatggtaaagttatgcggaaggtgggtgtagaagttattgggttgggagcattaaagcttacagggttccttagggagctgatgcagcagaaaaatatcaattttgaatcactgtacaccatccggactataaaagagcaactatgttatgtagctgctgattatgaagctgaaatttctaaaaacacacaagcctcatttggagaacgtcttacaaaagagcgctttcaaacaggagagatcttattccagccacgacttgcaggagtgcgtaccatgggtttgcaccaggctgttgctctttgtatggaccattgccatttggcagaactaacaggcgatgattcttggttcaagactgtagtcttggcaggaggcagtgcatgtttaccaggacttgcaggaagattagagaaggaattacatcgacttctccctccatctgtgtccaatggaatcactgtcattccccctccatttggtgcagatactgcatggtttggggctaaaataatcagcaatttgagcaccttccccggtccttggtgcgtgacaaagaagcagttccggcagaagtcaaaagtcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin F-box F-box-like

Protein Analysis

278

Amino Acids

30.57

Weight (kDa)

9.23

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56180 AT5G56180 AT5G56180
fragaria_vesca	FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660
malus_domestica	MD03G1042500.v1.1 MD11G1043300.v1.1 MD11G1044100.v1.1 MD11G1044700.v1.1 MD11G1045300.v1.1 MD11G1045700.v1.1
prunus_persica	Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1
pyrus_communis	pycom03g03280 pycom11g03700
rosa_chinensis	RchiOBHm_Chr5g0074751
rosa_laevigata	RLG00000036501
rosa_multiflora	Rmu_sc0000909.1_g000019
rosa_roxburghii	Rroxscaffold_1G00006830
rosa_rugosa	Rorug05G0433600
rosa_samantha	Rh5AG491300 Rh5BG512700 Rh5CG536400 Rh5DG524700
rosa_wichuraiana	Rw5G045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	420
AfaI	GTAC	3 cut(s)	117, 362, 520
AfeI	AGCGCT	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	725, 789
AgsI	TTSAA	3 cut(s)	353, 476, 601
AjnI	CCWGG	3 cut(s)	219, 534, 637
AluBI	AGCT	6 cut(s)	94, 170, 304, 325, 401, 416
AluI	AGCT	6 cut(s)	94, 170, 304, 325, 401, 416
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	737
Aor13HI	TCCGGA	1 cut(s)	369
Aor51HI	AGCGCT	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	22, 179, 331, 401
ApoI	RAATTY	1 cut(s)	420
AseI	ATTAAT	1 cut(s)	153
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	556, 785
AsuC2I	CCSGG	2 cut(s)	137, 783
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	556, 785
AxyI	CCTNAGG	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	4 cut(s)	34, 191, 343, 388
BccI	CCATC	2 cut(s)	374, 694
BciT130I	CCWGG	3 cut(s)	221, 536, 639
BcnI	CCSGG	2 cut(s)	137, 783
BcoDI	GTCTC	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	606
BfoI	RGCGCY	1 cut(s)	472
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	4 cut(s)	23, 180, 332, 402
BlsI	GCNGC	4 cut(s)	24, 181, 333, 403
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	5 cut(s)	137, 221, 536, 639, 783
Bme18I	GGWCC	2 cut(s)	556, 785
BmgT120I	GGNCC	2 cut(s)	556, 785
BmiI	GGNNCC	1 cut(s)	314
BmrFI	CCNGG	5 cut(s)	137, 221, 536, 639, 783
BmsI	GCATC	3 cut(s)	89, 91, 318
BoxI	GACNNNNGTC	1 cut(s)	608
BpuMI	CCSGG	2 cut(s)	137, 783
BsaJI	CCNNGG	3 cut(s)	522, 781, 788
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	2 cut(s)	725, 789
Bse21I	CCTNAGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	559
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	221, 536, 639
BseDI	CCNNGG	3 cut(s)	522, 781, 788
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	725, 789
BseMI	GCAATG	1 cut(s)	559
BseXI	GCAGC	4 cut(s)	34, 191, 343, 388
BsgI	GTGCAG	1 cut(s)	750
BsiHKAI	GWGCWC	1 cut(s)	776
BsiSI	CCGG	4 cut(s)	137, 370, 783, 814
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	725, 789
BsmAI	GTCTC	1 cut(s)	79
BsmFI	GGGAC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp13I	TCCGGA	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	486
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	262
BspEI	TCCGGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	559
BsrGI	TGTACA	1 cut(s)	360
BssECI	CCNNGG	3 cut(s)	522, 781, 788
BssMI	GATC	1 cut(s)	486
BssT1I	CCWWGG	2 cut(s)	522, 788
Bst2UI	CCWGG	3 cut(s)	221, 536, 639
Bst4CI	ACNGT	4 cut(s)	120, 360, 607, 709
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstAUI	TGTACA	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 167, 176, 331, 737, 771, 814
BstNI	CCWGG	3 cut(s)	221, 536, 639
BstNSI	RCATGY	1 cut(s)	633
BstPAI	GACNNNNGTC	1 cut(s)	608
BstSCI	CCNGG	5 cut(s)	135, 219, 534, 637, 781
BstSFI	CTRYAG	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	34, 191, 343, 388
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
Bsu36I	CCTNAGG	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	3 cut(s)	356, 631, 705
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	556, 785
Csp6I	GTAC	3 cut(s)	116, 361, 519
CviAII	CATG	4 cut(s)	127, 523, 630, 741
CviQI	GTAC	3 cut(s)	116, 361, 519
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	522, 788
Eco47I	GGWCC	2 cut(s)	556, 785
Eco47III	AGCGCT	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	219, 534, 637
EcoT14I	CCWWGG	2 cut(s)	522, 788
ErhI	CCWWGG	2 cut(s)	522, 788
FaeI	CATG	4 cut(s)	130, 526, 633, 744
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	126, 522, 629, 740
Fnu4HI	GCNGC	4 cut(s)	23, 180, 332, 402
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	4 cut(s)	23, 180, 332, 402
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	4 cut(s)	23, 180, 332, 402
HaeII	RGCGCY	1 cut(s)	472
HapII	CCGG	4 cut(s)	137, 370, 783, 814
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	130, 526, 633, 744
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	4 cut(s)	68, 353, 590, 702
HpaII	CCGG	4 cut(s)	137, 370, 783, 814
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	363, 635
Hpy188III	TCNNGA	3 cut(s)	84, 370, 601
Hpy8I	GTNNAC	2 cut(s)	363, 635
HpyAV	CCTTC	3 cut(s)	259, 655, 787
HpyCH4III	ACNGT	4 cut(s)	120, 360, 607, 709
HpyCH4IV	ACGT	1 cut(s)	454
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 167, 176, 331, 737, 771, 814
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	454
Hsp92II	CATG	4 cut(s)	130, 526, 633, 744
HspAI	GCGC	1 cut(s)	469
Kpn2I	TCCGGA	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	293, 322
Lsp1109I	GCAGC	4 cut(s)	34, 191, 343, 388
LweI	GCATC	3 cut(s)	89, 91, 318
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	3 cut(s)	223, 796, 829
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	1 cut(s)	663
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	6 cut(s)	150, 240, 346, 420, 665, 766
MnlI	CCTC	4 cut(s)	451, 614, 693, 729
MroI	TCCGGA	1 cut(s)	369
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	2 cut(s)	153, 299
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	4 cut(s)	137, 370, 783, 814
MspR9I	CCNGG	5 cut(s)	137, 221, 536, 639, 783
MvaI	CCWGG	3 cut(s)	221, 536, 639
MwoI	GCNNNNNNNGC	7 cut(s)	146, 167, 176, 331, 737, 771, 814
NciI	CCSGG	2 cut(s)	137, 783
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	4 cut(s)	130, 526, 633, 744
NlaIV	GGNNCC	1 cut(s)	314
NmuCI	GTSAC	3 cut(s)	223, 796, 829
NspI	RCATGY	1 cut(s)	633
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	4 cut(s)	68, 353, 590, 702
PkrI	GCNGC	4 cut(s)	24, 181, 333, 403
PshAI	GACNNNNGTC	1 cut(s)	608
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	3 cut(s)	219, 534, 637
PspGI	CCWGG	3 cut(s)	219, 534, 637
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	2 cut(s)	556, 785
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	486
RsaI	GTAC	3 cut(s)	117, 362, 520
RsaNI	GTAC	3 cut(s)	116, 361, 519
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	153, 299
SatI	GCNGC	4 cut(s)	23, 180, 332, 402
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	2 cut(s)	556, 785
ScaI	AGTACT	1 cut(s)	117
ScrFI	CCNGG	5 cut(s)	137, 221, 536, 639, 783
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	3 cut(s)	89, 91, 318
SfcI	CTRYAG	1 cut(s)	606
SinI	GGWCC	2 cut(s)	556, 785
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	6 cut(s)	150, 240, 346, 420, 665, 766
SsiI	CCGC	1 cut(s)	262
SspI	AATATT	1 cut(s)	211
StyD4I	CCNGG	5 cut(s)	135, 219, 534, 637, 781
StyI	CCWWGG	2 cut(s)	522, 788
TaaI	ACNGT	4 cut(s)	120, 360, 607, 709
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	2 cut(s)	83, 673
TasI	AATT	6 cut(s)	150, 240, 346, 420, 665, 766
TatI	WGTACW	2 cut(s)	115, 360
TfiI	GAWTC	4 cut(s)	68, 353, 590, 702
Tru1I	TTAA	2 cut(s)	153, 299
Tru9I	TTAA	2 cut(s)	153, 299
TscAI	CASTG	3 cut(s)	363, 631, 712
TseFI	GTSAC	3 cut(s)	223, 796, 829
TseI	GCWGC	4 cut(s)	22, 179, 331, 401
Tsp45I	GTSAC	3 cut(s)	223, 796, 829
TspDTI	ATGAA	2 cut(s)	143, 426
TspRI	CASTG	3 cut(s)	363, 631, 712
VpaK11BI	GGWCC	2 cut(s)	556, 785
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	1 cut(s)	420
XceI	RCATGY	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	809
ZrmI	AGTACT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.