Rh5DG524700

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
81285259 .. 81290137
4879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG524700.1

Sequence Viewer

Length: 1005 bp
ATGGCTACGCTGCTCAGAAAGGTCTGGGAATCGGTTTCCACCCGCAAGAATTCCACCTCCTCCTCGTCTTCTACTTCTTCTTCGGCGACGGCGCCGTTTCTAGGGGCGTTCGATCCTATTCCGACGGAGCTGCTGATGCAAATTGTGAGGCTGGTGGGGCCCAAGGGAGCGGCGAGGCTTCGCGTGGTGTGCAAGGCGTGGCGGTCGCTGGTGGCCGACAATGAGCTCTGGATTTTCTTCTGGCAGACTCAGGAGCTGCATTGGGAGAGCATCTTGTTCTCCGATACGCATTTGCGATCCGGTTACCATATTCAACCTTTAATGTCTAGTTATGGTCAGAGAGCGCAACCTCCCGGTGCTATTATCATCGATGGTGGCTCTGGCTACTGCAAGTTTGGTTGGAGTAAAGATGATTATCCAGCTGGGCGGTCAGCAACCTTTTTGGAATTTGGTAACGTTGAGTCTCCTATGTACTCCAGACTACACCACTTTTTTGGTACTATTTATAGCAGGATGCAGGTGAAACCATATTTGCAGCCTGTGGTTGTTTCTATTCCAATCTGTCATTATGATGATACTGAATCTGCCAAAGCATCGAGACAACAGCTCAAAGATGCCATATACAGAGTACTGTTTGACATGAATGTCCCAGCTGTTTGTGCAATTAATCAGGCAAGTTTAGCTTTATATGCAGCAAGAAGAACTTCTGGGATTGTTGTAAATATTGGCTTCCAGGTCACTTCTGTTGTTCCAATTCTAAATGGTAAAGTTATGCGGAAGGTGGGTGTAGAAGTTATGGGGTTGGGAGCATTAAAGCTTACAGGGTTCCTCAGGGAGCTGATGCAGCAGAAAAATATCAATTTTGAATCACTGTACACCATCCGGACTATAAAAGAGGTAAAGTTCTTATCCTTTTGTGGTGCATGCTGTATTCAATATTTATCCTCATATAATACTGTTCAGAAACTGTTAGTGCCACCACTAGCATTCAATTGTTCTTTATAA

Protein Analysis

334

Amino Acids

37.27

Weight (kDa)

9.36

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 40 - 77 1.2e-08 F-box-like
F-box PF00646 40 - 78 1e-07 F-box domain
Actin PF00022 193 - 301 2.5e-15 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1003
AarI CACCTGC 1 cut(s) 508
AasI GACNNNNNNGTC 1 cut(s) 644
Acc36I ACCTGC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 91
AccBSI CCGCTC 1 cut(s) 170
AccII CGCG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 882
AciI CCGC 5 cut(s) 43, 170, 202, 427, 775
AclI AACGTT 1 cut(s) 456
AclWI GGATC 2 cut(s) 107, 291
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 2 cut(s) 49, 446
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 4 cut(s) 473, 499, 630, 875
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 4 cut(s) 314, 866, 935, 991
AjnI CCWGG 1 cut(s) 732
AluBI AGCT 9 cut(s) 130, 226, 256, 422, 607, 653, 683, 817, 838
AluI AGCT 9 cut(s) 130, 226, 256, 422, 607, 653, 683, 817, 838
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 468, 592
AlwI GGATC 2 cut(s) 107, 291
AlwNI CAGNNNCTG 2 cut(s) 256, 967
Aor13HI TCCGGA 1 cut(s) 882
AoxI GGCC 2 cut(s) 158, 213
ApaI GGGCCC 1 cut(s) 162
ApeKI GCWGC 6 cut(s) 10, 130, 256, 535, 692, 844
ApoI RAATTY 2 cut(s) 49, 446
AseI ATTAAT 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 703
AspLEI GCGC 2 cut(s) 94, 346
AspS9I GGNCC 2 cut(s) 158, 159
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 532
AxyI CCTNAGG 1 cut(s) 830
BaeGI GKGCMC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 91
BanII GRGCYC 2 cut(s) 162, 228
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 5 cut(s) 117, 243, 547, 704, 856
BccI CCATC 2 cut(s) 365, 887
BceAI ACGGC 2 cut(s) 79, 105
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 1 cut(s) 734
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 468, 592
BfaI CTAG 3 cut(s) 101, 327, 983
BfoI RGCGCY 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 508
BisI GCNGC 7 cut(s) 11, 131, 171, 257, 536, 693, 845
BlsI GCNGC 7 cut(s) 12, 132, 172, 258, 537, 694, 846
BmcAI AGTACT 1 cut(s) 630
Bme1390I CCNGG 2 cut(s) 354, 734
BmgT120I GGNCC 2 cut(s) 158, 159
BmiI GGNNCC 4 cut(s) 93, 159, 160, 827
BmrFI CCNGG 2 cut(s) 354, 734
BmsI GCATC 6 cut(s) 126, 279, 504, 602, 604, 831
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 460
BpuMI CCSGG 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 2 cut(s) 299, 882
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse21I CCTNAGG 1 cut(s) 830
Bse8I GATNNNNATC 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 882
BseBI CCWGG 1 cut(s) 734
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 519, 879
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 3 cut(s) 28, 263, 844
BseRI GAGGAG 2 cut(s) 49, 52
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 5 cut(s) 117, 243, 547, 704, 856
BseYI CCCAGC 2 cut(s) 422, 649
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 2 cut(s) 160, 215
BshNI GGYRCC 1 cut(s) 91
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 3 cut(s) 300, 354, 883
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 2 cut(s) 468, 592
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 986
BsnI GGCC 2 cut(s) 160, 215
Bsp120I GGGCCC 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 162, 228
Bsp13I TCCGGA 1 cut(s) 882
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 2 cut(s) 112, 296
BspACI CCGC 5 cut(s) 43, 170, 202, 427, 775
BspANI GGCC 2 cut(s) 160, 215
BspCNI CTCAG 3 cut(s) 27, 262, 843
BspDI ATCGAT 1 cut(s) 369
BspEI TCCGGA 1 cut(s) 882
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 4 cut(s) 93, 159, 160, 827
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 2 cut(s) 107, 291
BspT107I GGYRCC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 873
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 112, 296
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 4 cut(s) 633, 873, 958, 969
BstACI GRCGYC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 873
BstC8I GCNNGC 1 cut(s) 925
BstDEI CTNAG 3 cut(s) 14, 249, 830
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 2 cut(s) 519, 879
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 2 cut(s) 94, 346
BstKTI GATC 2 cut(s) 115, 299
BstMAI GTCTC 2 cut(s) 468, 592
BstMBI GATC 2 cut(s) 112, 296
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 7 cut(s) 136, 157, 189, 659, 680, 689, 844
BstNI CCWGG 1 cut(s) 734
BstNSI RCATGY 1 cut(s) 927
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 352, 732
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 5 cut(s) 117, 243, 547, 704, 856
BstV2I GAAGAC 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 494
Bsu15I ATCGAT 1 cut(s) 369
Bsu36I CCTNAGG 1 cut(s) 830
BsuRI GGCC 2 cut(s) 160, 215
BsuTUI ATCGAT 1 cut(s) 369
BtsCI GGATG 2 cut(s) 519, 879
BtsIMutI CAGTG 1 cut(s) 869
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 925
CaiI CAGNNNCTG 2 cut(s) 256, 967
CfoI GCGC 2 cut(s) 94, 346
Cfr13I GGNCC 2 cut(s) 158, 159
ClaI ATCGAT 1 cut(s) 369
Csp6I GTAC 4 cut(s) 472, 498, 629, 874
CviAII CATG 2 cut(s) 640, 924
CviQI GTAC 4 cut(s) 472, 498, 629, 874
DdeI CTNAG 3 cut(s) 14, 249, 830
DinI GGCGCC 1 cut(s) 93
DpnI GATC 2 cut(s) 114, 298
DpnII GATC 2 cut(s) 112, 296
DrdI GACNNNNNNGTC 1 cut(s) 644
DseDI GACNNNNNNGTC 1 cut(s) 644
EaeI YGGCCR 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 162, 228
Eco53kI GAGCTC 1 cut(s) 226
Eco81I CCTNAGG 1 cut(s) 830
Eco91I GGTNACC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 732
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 162, 228
EgeI GGCGCC 1 cut(s) 93
EheI GGCGCC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 643, 927
FalI AAGNNNNNCTT 4 cut(s) 667, 699, 688, 720
FaqI GGGAC 1 cut(s) 632
FatI CATG 2 cut(s) 639, 923
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 7 cut(s) 11, 131, 171, 257, 536, 693, 845
FokI GGATG 2 cut(s) 526, 866
FriOI GRGCYC 2 cut(s) 162, 228
Fsp4HI GCNGC 7 cut(s) 11, 131, 171, 257, 536, 693, 845
FspBI CTAG 3 cut(s) 101, 327, 983
GlaI GCGC 2 cut(s) 93, 345
GluI GCNGC 7 cut(s) 11, 131, 171, 257, 536, 693, 845
GsaI CCCAGC 2 cut(s) 426, 653
GsuI CTGGAG 1 cut(s) 460
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 160, 215
HapII CCGG 3 cut(s) 300, 354, 883
HhaI GCGC 2 cut(s) 94, 346
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 2 cut(s) 643, 927
Hin6I GCGC 2 cut(s) 92, 344
HinP1I GCGC 2 cut(s) 92, 344
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 5 cut(s) 29, 247, 461, 581, 866
HpaII CCGG 3 cut(s) 300, 354, 883
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 876
Hpy188I TCNGA 5 cut(s) 17, 123, 283, 339, 963
Hpy188III TCNNGA 5 cut(s) 229, 251, 477, 597, 883
Hpy8I GTNNAC 1 cut(s) 876
Hpy99I CGWCG 2 cut(s) 91, 127
HpyAV CCTTC 1 cut(s) 772
HpyCH4III ACNGT 4 cut(s) 633, 873, 958, 969
HpyCH4IV ACGT 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 7 cut(s) 136, 157, 189, 659, 680, 689, 844
HpyF3I CTNAG 3 cut(s) 14, 249, 830
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 643, 927
HspAI GCGC 2 cut(s) 92, 344
KasI GGCGCC 1 cut(s) 91
Kpn2I TCCGGA 1 cut(s) 882
Kzo9I GATC 2 cut(s) 112, 296
LmnI GCTCC 5 cut(s) 127, 167, 253, 806, 835
Lsp1109I GCAGC 5 cut(s) 117, 243, 547, 704, 856
LweI GCATC 6 cut(s) 126, 279, 504, 602, 604, 831
MaeI CTAG 3 cut(s) 101, 327, 983
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 3 cut(s) 302, 452, 736
MalI GATC 2 cut(s) 114, 298
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 112, 296
MboII GAAGA 5 cut(s) 60, 69, 72, 229, 711
MfeI CAATTG 1 cut(s) 991
MhlI GDGCHC 2 cut(s) 162, 228
MluCI AATT 7 cut(s) 49, 141, 446, 663, 753, 859, 991
Mly113I GGCGCC 1 cut(s) 92
MlyI GAGTC 2 cut(s) 241, 470
MmeI TCCRAC 2 cut(s) 146, 380
MnlI CCTC 9 cut(s) 67, 70, 73, 141, 168, 360, 839, 889, 955
MroI TCCGGA 1 cut(s) 882
MroXI GAANNNNTTC 1 cut(s) 703
MseI TTAA 3 cut(s) 320, 666, 812
MslI CAYNNNNRTG 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 422, 653
MspI CCGG 3 cut(s) 300, 354, 883
MspR9I CCNGG 2 cut(s) 354, 734
MunI CAATTG 1 cut(s) 991
Mva1269I GAATGC 1 cut(s) 986
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 7 cut(s) 136, 157, 189, 659, 680, 689, 844
NarI GGCGCC 1 cut(s) 92
NciI CCSGG 1 cut(s) 354
NdeII GATC 2 cut(s) 112, 296
NlaIII CATG 2 cut(s) 643, 927
NlaIV GGNNCC 4 cut(s) 93, 159, 160, 827
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 1 cut(s) 927
PaeI GCATGC 1 cut(s) 927
PaqCI CACCTGC 1 cut(s) 508
PctI GAATGC 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 703
PfeI GAWTC 3 cut(s) 29, 581, 866
PkrI GCNGC 7 cut(s) 12, 132, 172, 258, 537, 694, 846
PleI GAGTC 2 cut(s) 241, 469
PluTI GGCGCC 1 cut(s) 95
PpsI GAGTC 2 cut(s) 241, 469
PshBI ATTAAT 1 cut(s) 666
PsiI TTATAA 1 cut(s) 1003
Psp124BI GAGCTC 1 cut(s) 228
Psp1406I AACGTT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 732
PspEI GGTNACC 1 cut(s) 302
PspFI CCCAGC 2 cut(s) 422, 649
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 4 cut(s) 93, 159, 160, 827
PspOMI GGGCCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 158, 159
PstNI CAGNNNCTG 2 cut(s) 256, 967
PvuII CAGCTG 2 cut(s) 422, 653
RsaI GTAC 4 cut(s) 473, 499, 630, 875
RsaNI GTAC 4 cut(s) 472, 498, 629, 874
RseI CAYNNNNRTG 1 cut(s) 570
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 3 cut(s) 320, 666, 812
SatI GCNGC 7 cut(s) 11, 131, 171, 257, 536, 693, 845
Sau3AI GATC 2 cut(s) 112, 296
Sau96I GGNCC 2 cut(s) 158, 159
ScaI AGTACT 1 cut(s) 630
SchI GAGTC 2 cut(s) 241, 470
ScrFI CCNGG 2 cut(s) 354, 734
SduI GDGCHC 2 cut(s) 162, 228
SfaNI GCATC 6 cut(s) 126, 279, 504, 602, 604, 831
SfoI GGCGCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 570
SphI GCATGC 1 cut(s) 927
Sse9I AATT 7 cut(s) 49, 141, 446, 663, 753, 859, 991
SsiI CCGC 5 cut(s) 43, 170, 202, 427, 775
SspDI GGCGCC 1 cut(s) 91
SspI AATATT 2 cut(s) 724, 938
SspMI CTAG 3 cut(s) 101, 327, 983
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 2 cut(s) 352, 732
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 4 cut(s) 633, 873, 958, 969
TaiI ACGT 1 cut(s) 459
TaqI TCGA 3 cut(s) 111, 369, 596
TasI AATT 7 cut(s) 49, 141, 446, 663, 753, 859, 991
TatI WGTACW 3 cut(s) 471, 628, 873
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 3 cut(s) 29, 581, 866
Tru1I TTAA 3 cut(s) 320, 666, 812
Tru9I TTAA 3 cut(s) 320, 666, 812
TscAI CASTG 1 cut(s) 876
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 6 cut(s) 10, 130, 256, 535, 692, 844
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 1 cut(s) 656
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 876
VspI ATTAAT 1 cut(s) 666
XapI RAATTY 2 cut(s) 49, 446
XceI RCATGY 1 cut(s) 927
XmnI GAANNNNTTC 1 cut(s) 703
XspI CTAG 3 cut(s) 101, 327, 983
ZrmI AGTACT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.