Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004753

Physical Location & Seq

Genomic Coordinates Reverse (-)

3955048 .. 3958027

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1045300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAACTTTTTTGTATTTAAATTATTATCAGCGGTAGTAAAGAGTGGAATTTTTACTGACAGAAATTTTTATTTTTGGCAAAGTTGTGCAAAGAAAACGTTACGCCATTGTTTTGGGGGCTCTGGCTATTGCAAGTTTGGCTGGAGCAAATACACATGTCCATCAGGCCGATCAGCAACCTTTTTGGTGAAACCATCTTCGCAGCCCGTGGTTTTGTCTATACCAATCTGCCATTATGATGATACTGAATCTGCTAAAGCATCGAGACGGCAGCTCAAAGAAGCCATATACAAAGTACTTTTTGACATGAATGTCCCTGCTGTCGGTGCCGTTAATCAGGCAACTTTAGCTTTGTATGCAGCAAGACGAACTTCAGGGTTTGTTGTAAACATTGGTTTCCAGGTCACTTCTATTGTTCCAATTTTAAATGGTAAAGTTATGCGCAAGGTGGGTGTGGAGGTTATGGGATTGGGAGCGCTGAAGCTTACAGGGTTCCTTAGGGAGCTATTGCAGCAGAGCAATATAAATTTTGACTCACTGTACACAGTTTGGACTGTGAAAGAGGCGTACTATGGGTTTGCACCAGGCTGTTGCTCTTTGCATGGAACATTGCCATTCGGCAGAACTAACAGGAGACGATGCATGGTTCAAGACAGTTGTTTTGTGAGGAGGCGCCGCATGTTTACCAGGACTCGCAGCACCTTCCCGGGCCCCTGGTGCGTAACAAAGAAGCAGTTCCGGCAGAAGTCCAGAATCAAGCGTATGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin F-box F-box-like

Protein Analysis

257

Amino Acids

29.14

Weight (kDa)

10.3

Isoelectric Point (pI)

58.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	88 - 185	1.7e-13	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56180 AT5G56180 AT5G56180
fragaria_vesca	FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660
malus_domestica	MD03G1042500.v1.1 MD11G1043300.v1.1 MD11G1044100.v1.1 MD11G1044700.v1.1 MD11G1045300.v1.1 MD11G1045700.v1.1
prunus_persica	Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1
pyrus_communis	pycom03g03280 pycom11g03700
rosa_chinensis	RchiOBHm_Chr5g0074751
rosa_laevigata	RLG00000036501
rosa_multiflora	Rmu_sc0000909.1_g000019
rosa_roxburghii	Rroxscaffold_1G00006830
rosa_rugosa	Rorug05G0433600
rosa_samantha	Rh5AG491300 Rh5BG512700 Rh5CG536400 Rh5DG524700
rosa_wichuraiana	Rw5G045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	311
Acc16I	TGCGCA	1 cut(s)	443
AccB1I	GGYRCC	2 cut(s)	326, 672
AciI	CCGC	2 cut(s)	32, 676
AclI	AACGTT	1 cut(s)	98
AcsI	RAATTY	3 cut(s)	48, 64, 526
AcuI	CTGAAG	2 cut(s)	357, 500
AcyI	GRCGYC	1 cut(s)	673
AfaI	GTAC	3 cut(s)	297, 542, 569
AfeI	AGCGCT	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	650
AjnI	CCWGG	4 cut(s)	399, 583, 686, 713
AluBI	AGCT	4 cut(s)	274, 350, 484, 505
AluI	AGCT	4 cut(s)	274, 350, 484, 505
Alw26I	GTCTC	2 cut(s)	259, 628
Ama87I	CYCGRG	1 cut(s)	706
Aor51HI	AGCGCT	1 cut(s)	477
AoxI	GGCC	2 cut(s)	166, 709
ApaI	GGGCCC	1 cut(s)	713
ApeKI	GCWGC	5 cut(s)	202, 271, 359, 511, 696
ApoI	RAATTY	3 cut(s)	48, 64, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	644, 676
Asp700I	GAANNNNTTC	1 cut(s)	734
AspLEI	GCGC	3 cut(s)	444, 478, 675
AspS9I	GGNCC	2 cut(s)	709, 710
AsuC2I	CCSGG	2 cut(s)	707, 708
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	706
AxyI	CCTNAGG	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	713
BanI	GGYRCC	2 cut(s)	326, 672
BanII	GRGCYC	2 cut(s)	122, 713
BbvI	GCAGC	5 cut(s)	214, 283, 371, 523, 708
BccI	CCATC	2 cut(s)	169, 202
BceAI	ACGGC	2 cut(s)	284, 314
BciT130I	CCWGG	4 cut(s)	401, 585, 688, 715
BcnI	CCSGG	2 cut(s)	707, 708
BcoDI	GTCTC	2 cut(s)	259, 628
BfoI	RGCGCY	2 cut(s)	479, 676
BisI	GCNGC	6 cut(s)	203, 272, 360, 512, 676, 697
BlsI	GCNGC	6 cut(s)	204, 273, 361, 513, 677, 698
BmcAI	AGTACT	1 cut(s)	297
Bme1390I	CCNGG	6 cut(s)	401, 585, 688, 707, 708, 715
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	709, 710
BmiI	GGNNCC	5 cut(s)	328, 494, 674, 711, 712
BmrFI	CCNGG	6 cut(s)	401, 585, 688, 707, 708, 715
BmsI	GCATC	2 cut(s)	269, 629
BpmI	CTGGAG	1 cut(s)	163
BpuMI	CCSGG	2 cut(s)	707, 708
BsaHI	GRCGYC	1 cut(s)	673
BsaJI	CCNNGG	3 cut(s)	207, 706, 713
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse21I	CCTNAGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	608
BseBI	CCWGG	4 cut(s)	401, 585, 688, 715
BseDI	CCNNGG	3 cut(s)	207, 706, 713
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMI	GCAATG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	682
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	5 cut(s)	214, 283, 371, 523, 708
BshFI	GGCC	2 cut(s)	168, 711
BshNI	GGYRCC	2 cut(s)	326, 672
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	2 cut(s)	707, 739
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	259, 628
BsmBI	CGTCTC	2 cut(s)	259, 628
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	168, 711
BsoBI	CYCGRG	1 cut(s)	706
Bsp120I	GGGCCC	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	122, 713
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	170
BspACI	CCGC	2 cut(s)	32, 676
BspANI	GGCC	2 cut(s)	168, 711
BspLI	GGNNCC	5 cut(s)	328, 494, 674, 711, 712
BspT107I	GGYRCC	2 cut(s)	326, 672
BsrDI	GCAATG	1 cut(s)	608
BsrGI	TGTACA	1 cut(s)	540
BssECI	CCNNGG	3 cut(s)	207, 706, 713
BssMI	GATC	1 cut(s)	170
BssNI	GRCGYC	1 cut(s)	673
Bst2UI	CCWGG	4 cut(s)	401, 585, 688, 715
Bst4CI	ACNGT	4 cut(s)	540, 547, 556, 656
BstACI	GRCGYC	1 cut(s)	673
BstAUI	TGTACA	1 cut(s)	540
BstDEI	CTNAG	1 cut(s)	497
BstDSI	CCRYGG	1 cut(s)	207
BstH2I	RGCGCY	2 cut(s)	479, 676
BstHHI	GCGC	3 cut(s)	444, 478, 675
BstKTI	GATC	1 cut(s)	173
BstMAI	GTCTC	2 cut(s)	259, 628
BstMBI	GATC	1 cut(s)	170
BstMWI	GCNNNNNNNGC	7 cut(s)	138, 326, 347, 356, 511, 717, 739
BstNI	CCWGG	4 cut(s)	401, 585, 688, 715
BstNSI	RCATGY	2 cut(s)	159, 682
BstSCI	CCNGG	6 cut(s)	399, 583, 686, 705, 706, 713
BstSLI	GKGCMC	1 cut(s)	713
BstV1I	GCAGC	5 cut(s)	214, 283, 371, 523, 708
BstXI	CCANNNNNNTGG	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	168, 711
BtgI	CCRYGG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	536
CfoI	GCGC	3 cut(s)	444, 478, 675
Cfr13I	GGNCC	2 cut(s)	709, 710
Cfr9I	CCCGGG	1 cut(s)	706
Csp6I	GTAC	3 cut(s)	296, 541, 568
CviAII	CATG	5 cut(s)	156, 307, 602, 643, 679
CviQI	GTAC	3 cut(s)	296, 541, 568
DdeI	CTNAG	1 cut(s)	497
DinI	GGCGCC	1 cut(s)	674
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
DraI	TTTAAA	2 cut(s)	19, 426
DrdI	GACNNNNNNGTC	1 cut(s)	311
DseDI	GACNNNNNNGTC	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	122, 713
Eco47III	AGCGCT	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	357, 500
Eco81I	CCTNAGG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRII	CCWGG	4 cut(s)	399, 583, 686, 713
EcoT22I	ATGCAT	1 cut(s)	644
EcoT38I	GRGCYC	2 cut(s)	122, 713
EgeI	GGCGCC	1 cut(s)	674
EheI	GGCGCC	1 cut(s)	674
Esp3I	CGTCTC	2 cut(s)	259, 628
FaeI	CATG	5 cut(s)	159, 310, 605, 646, 682
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	5 cut(s)	155, 306, 601, 642, 678
Fnu4HI	GCNGC	6 cut(s)	203, 272, 360, 512, 676, 697
FriOI	GRGCYC	2 cut(s)	122, 713
Fsp4HI	GCNGC	6 cut(s)	203, 272, 360, 512, 676, 697
FspI	TGCGCA	1 cut(s)	443
GlaI	GCGC	3 cut(s)	443, 477, 674
GluI	GCNGC	6 cut(s)	203, 272, 360, 512, 676, 697
GsuI	CTGGAG	1 cut(s)	163
HaeII	RGCGCY	2 cut(s)	479, 676
HaeIII	GGCC	2 cut(s)	168, 711
HapII	CCGG	2 cut(s)	707, 739
HhaI	GCGC	3 cut(s)	444, 478, 675
Hin1I	GRCGYC	1 cut(s)	673
Hin1II	CATG	5 cut(s)	159, 310, 605, 646, 682
Hin6I	GCGC	3 cut(s)	442, 476, 673
HinP1I	GCGC	3 cut(s)	442, 476, 673
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	4 cut(s)	248, 533, 691, 753
HpaII	CCGG	2 cut(s)	707, 739
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	3 cut(s)	388, 543, 684
Hpy188III	TCNNGA	3 cut(s)	264, 650, 750
Hpy8I	GTNNAC	3 cut(s)	388, 543, 684
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	4 cut(s)	540, 547, 556, 656
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	7 cut(s)	89, 132, 359, 511, 581, 601, 642
HpyF10VI	GCNNNNNNNGC	7 cut(s)	138, 326, 347, 356, 511, 717, 739
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	673
Hsp92II	CATG	5 cut(s)	159, 310, 605, 646, 682
HspAI	GCGC	3 cut(s)	442, 476, 673
KasI	GGCGCC	1 cut(s)	672
Kzo9I	GATC	1 cut(s)	170
LmnI	GCTCC	3 cut(s)	144, 473, 502
Lsp1109I	GCAGC	5 cut(s)	214, 283, 371, 523, 708
LweI	GCATC	2 cut(s)	269, 629
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	3 cut(s)	99, 403, 721
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	1 cut(s)	189
MhlI	GDGCHC	2 cut(s)	122, 713
MluCI	AATT	5 cut(s)	20, 48, 64, 420, 526
Mly113I	GGCGCC	1 cut(s)	673
MlyI	GAGTC	2 cut(s)	527, 685
MnlI	CCTC	4 cut(s)	451, 556, 660, 663
Mph1103I	ATGCAT	1 cut(s)	644
MroXI	GAANNNNTTC	1 cut(s)	734
MseI	TTAA	3 cut(s)	18, 333, 425
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	707, 739
MspR9I	CCNGG	6 cut(s)	401, 585, 688, 707, 708, 715
MvaI	CCWGG	4 cut(s)	401, 585, 688, 715
MwoI	GCNNNNNNNGC	7 cut(s)	138, 326, 347, 356, 511, 717, 739
NarI	GGCGCC	1 cut(s)	673
NciI	CCSGG	2 cut(s)	707, 708
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	5 cut(s)	159, 310, 605, 646, 682
NlaIV	GGNNCC	5 cut(s)	328, 494, 674, 711, 712
NmuCI	GTSAC	1 cut(s)	403
NsbI	TGCGCA	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	644
NspI	RCATGY	2 cut(s)	159, 682
PciI	ACATGT	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	248, 753
PkrI	GCNGC	6 cut(s)	204, 273, 361, 513, 677, 698
PleI	GAGTC	2 cut(s)	527, 685
PluTI	GGCGCC	1 cut(s)	676
PpsI	GAGTC	2 cut(s)	527, 685
PscI	ACATGT	1 cut(s)	155
Psp1406I	AACGTT	1 cut(s)	98
Psp6I	CCWGG	4 cut(s)	399, 583, 686, 713
PspGI	CCWGG	4 cut(s)	399, 583, 686, 713
PspN4I	GGNNCC	5 cut(s)	328, 494, 674, 711, 712
PspOMI	GGGCCC	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	709, 710
RsaI	GTAC	3 cut(s)	297, 542, 569
RsaNI	GTAC	3 cut(s)	296, 541, 568
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	18, 333, 425
SatI	GCNGC	6 cut(s)	203, 272, 360, 512, 676, 697
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	2 cut(s)	709, 710
ScaI	AGTACT	1 cut(s)	297
SchI	GAGTC	2 cut(s)	527, 685
ScrFI	CCNGG	6 cut(s)	401, 585, 688, 707, 708, 715
SduI	GDGCHC	2 cut(s)	122, 713
SfaNI	GCATC	2 cut(s)	269, 629
SfoI	GGCGCC	1 cut(s)	674
SmaI	CCCGGG	1 cut(s)	708
SmiI	ATTTAAAT	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	5 cut(s)	20, 48, 64, 420, 526
SsiI	CCGC	2 cut(s)	32, 676
SspDI	GGCGCC	1 cut(s)	672
StyD4I	CCNGG	6 cut(s)	399, 583, 686, 705, 706, 713
SwaI	ATTTAAAT	1 cut(s)	19
TaaI	ACNGT	4 cut(s)	540, 547, 556, 656
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	263
TasI	AATT	5 cut(s)	20, 48, 64, 420, 526
TatI	WGTACW	2 cut(s)	295, 540
TauI	GCSGC	1 cut(s)	678
TfiI	GAWTC	2 cut(s)	248, 753
Tru1I	TTAA	3 cut(s)	18, 333, 425
Tru9I	TTAA	3 cut(s)	18, 333, 425
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	5 cut(s)	202, 271, 359, 511, 696
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	2 cut(s)	17, 323
TspMI	CCCGGG	1 cut(s)	706
TspRI	CASTG	1 cut(s)	543
XapI	RAATTY	3 cut(s)	48, 64, 526
XceI	RCATGY	2 cut(s)	159, 682
XmaI	CCCGGG	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	734
ZrmI	AGTACT	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.