Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004753

Physical Location & Seq

Genomic Coordinates Reverse (-)

3710321 .. 3711860

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1043300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCAAACGCATCAAGATAAAATAAGGGTATTTTGGGAATCCGCTGTTTTCTCGGAAACCCACCTGAGGATAACATTCTCGAGTGAGGGTCCCCATTTGTCCTATATGAGTATTTATGGGGGCTCTGGCTATTGCAAGTTTGGCCGGAGCAAATACGCATGTCCATCAGGCCGGTCAGCCACCCTTTTGGTGAGATGTTTATTTCAGGTCGCAGTCAAGAAGTTCTTTTGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin F-box F-box-like

Protein Analysis

79

Amino Acids

8.89

Weight (kDa)

9.46

Isoelectric Point (pI)

59.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56180 AT5G56180 AT5G56180
fragaria_vesca	FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660 FvH4_3g41660
malus_domestica	MD03G1042500.v1.1 MD11G1043300.v1.1 MD11G1044100.v1.1 MD11G1044700.v1.1 MD11G1045300.v1.1 MD11G1045700.v1.1
prunus_persica	Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1 Prupe.6G034100_v2.0.a1
pyrus_communis	pycom03g03280 pycom11g03700
rosa_chinensis	RchiOBHm_Chr5g0074751
rosa_laevigata	RLG00000036501
rosa_multiflora	Rmu_sc0000909.1_g000019
rosa_roxburghii	Rroxscaffold_1G00006830
rosa_rugosa	Rorug05G0433600
rosa_samantha	Rh5AG491300 Rh5BG512700 Rh5CG536400 Rh5DG524700
rosa_wichuraiana	Rw5G045500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	79
AoxI	GGCC	2 cut(s)	142, 169
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	89
AxyI	CCTNAGG	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	125
BccI	CCATC	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	90, 91
BmsI	GCATC	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	171
Bse21I	CCTNAGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	144, 171
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	145, 172
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	2 cut(s)	144, 171
BsoBI	CYCGRG	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	144, 171
BspCNI	CTCAG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	90, 91
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	162
BstXI	CCANNNNNNTGG	1 cut(s)	187
Bsu36I	CCTNAGG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	144, 171
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	1 cut(s)	159
CviJI	RGCY	5 cut(s)	123, 129, 144, 171, 179
CviKI_1	RGCY	5 cut(s)	123, 129, 144, 171, 179
DdeI	CTNAG	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	89
Eco81I	CCTNAGG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	1 cut(s)	162
FaiI	YATR	6 cut(s)	105, 107, 117, 160, 233, 235
FalI	AAGNNNNNCTT	1 cut(s)	209
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	144, 171
HapII	CCGG	2 cut(s)	145, 172
Hin1II	CATG	1 cut(s)	162
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	2 cut(s)	145, 172
HphI	GGTGA	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	3 cut(s)	14, 79, 217
HpyCH4V	TGCA	3 cut(s)	4, 135, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	1 cut(s)	162
KflI	GGGWCCC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	6 cut(s)	77, 111, 153, 158, 185, 191
LweI	GCATC	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	60, 79
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	145, 172
MwoI	GCNNNNNNNGC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	162
NlaIV	GGNNCC	2 cut(s)	90, 91
NspI	RCATGY	1 cut(s)	162
PaeR7I	CTCGAG	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	90, 91
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	2 cut(s)	66, 210
SfaNI	GCATC	1 cut(s)	19
Sfr274I	CTCGAG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SsiI	CCGC	1 cut(s)	42
TaqI	TCGA	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	162
XhoI	CTCGAG	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.