Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007861

Physical Location & Seq

Genomic Coordinates Reverse (-)

22750462 .. 22752817

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGATTTGGAGAGTGAAAGCTCTGTTCTTGAATCTGTTGAAGATAATAATGGTTTGATTGGTGATCTTGATAAAGAGTTGAATTCACCGGTTGAGACTTCTCCTCTTATATCAAAAGGATTTGGTTTAAGAAAATGGAAGAGGAGGTTAAGGAGAGATCTTGTTAAGGATGATACTTCTGTGAGTATGGAGAATAGTAAAGCTCTGAAGAGGGTGTTGTCAGGATTAGTTGATCCGAATGCTAAACAAATGCATTTGCCAGGACCTGAAGTTAGACAAGATAGTGTTGGTTCTGTTGGCTCGGTGAATAGTGTGGTTGGTTTTGTAATGGGTGGGGAGAGTTATGGCAATGGTCTTGCTTTTGCAGCTGGTGTTGATTCGGATAACAGTGAGGATCGGAGTAGTACAATGAGTCATTCTTGGGACAAACATAGAGGAAAGGTCTCGGGTGGGAAGAGTGTGATTAGTTCGGGGGATAGTAGTCAACAAAGGAAGAGTAGTGTAGAGAAGAGTAATAAACTTAGAGGAGAAAGGATCAAAATTGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGCTGACTCAAGAAGCTCCAACTTTGTGTTTATGCAGGGTGCTTCCTATAGTTTGAGTAGCAGAGAACAAGGCGGAAGAAGAATGATGGATTATGACGATGAAAATAGTGATCATGACGCACATACTTCGAAGAGAAAGGATAACGTGGAAGAAGAAGAAGAAGAAACAGAAGACTATTCACAAGGAGACTGTGTTGAAGAGTCTCAAATCAAGAGCAATGGTTCATCAGACAATCTGGATCCATTAATAGTAGCCGTCAACAGTTTCCAGACTTTGCAAGAAGCCCTCCAAAAAGAACTTCAAAAATTCCAAGAGCTTGGGAAAGAAGAACCTATAACATCACTGCATGATGGAGGAGAAAGCAGCAGTTGCATACACGCAGGACACGAAGGAGCTAGTGAAGCAAGCTCTTCTTACCGGTTTGGGTCTGAAAAGATGGGAGAAATGGAATTAACTTCTCTAGATTCCGAGATACTAAACCTGGTGAACAATGTAGAGCATCTGGAGATCAAACTAGAAGAAGCAAAGCGTATTCTCGAGGTTAAAGAAACACAAATCCGTGAACTCGAATCTACCATAAACGTTTCAGAGACGTGTAACGGAGGAACAGAGATCGGGATAGAAGACATCTTCCAGCAAAAGGTGGAGGCAGAGATTGAATATATCATATTCTCAAGATCAGTGGGAAACCTAAAGAGACGGATCAAACTGATTGAAGAAGAGAAGACATTGGGGCTATCAAAGCTTGATAAAGCAGAAACAAAAGCTGAGAATCTAAAGAATCAAGCTCAAGATTTACAAAACCATTGTGTAGAGATCACAGAGATTCAAGAAGTGGAGTGCCTGAAGAAGAGAGCATTTAAGACCACTAGATGTCTTCTTCTACAGTTAGGCTTGCTCTTTATACTGTATTATTCTCTGTTACCAGAACCGGAGATTGCTGTTCCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006996 GO:0006997 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

509

Amino Acids

56.51

Weight (kDa)

4.88

Isoelectric Point (pI)

61.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26455 AT5G56210
fragaria_vesca	FvH4_3g41590 FvH4_3g41590
malus_domestica	MD03G1043100.v1.1 MD11G1046100.v1.1
prunus_persica	Prupe.6G035500_v2.0.a1 Prupe.6G035500_v2.0.a1
pyrus_communis	pycom03g03330 pycom11g03740
rosa_chinensis	RchiOBHm_Chr5g0074601
rosa_laevigata	RLG00000036490
rosa_multiflora	Rmu_sc0001104.1_g000010 Rmu_sc0025049.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006970 Rroxscaffold_2G00102040 Rroxscaffold_3G00254370
rosa_rugosa	Rorug05G0433000 Rorug05G0433100 Rorug05G0433200
rosa_samantha	Rh5AG490300 Rh5BG511200 Rh5CG534900 Rh5DG523400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	648
AclI	AACGTT	1 cut(s)	1158
AclWI	GGATC	6 cut(s)	227, 402, 542, 809, 822, 1286
AcsI	RAATTY	2 cut(s)	82, 881
AcuI	CTGAAG	3 cut(s)	227, 288, 1442
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	1216
AflIII	ACRYGT	1 cut(s)	1169
AgeI	ACCGGT	2 cut(s)	88, 993
AgsI	TTSAA	8 cut(s)	32, 41, 82, 773, 878, 1235, 1292, 1406
AjiI	CACGTC	1 cut(s)	1170
AjnI	CCWGG	2 cut(s)	259, 1056
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
Alw26I	GTCTC	6 cut(s)	89, 448, 756, 783, 1160, 1267
AlwI	GGATC	6 cut(s)	227, 402, 542, 809, 822, 1286
AlwNI	CAGNNNCTG	1 cut(s)	266
Ama87I	CYCGRG	2 cut(s)	445, 1112
ApeKI	GCWGC	2 cut(s)	365, 939
ApoI	RAATTY	2 cut(s)	82, 881
AseI	ATTAAT	1 cut(s)	821
AsiGI	ACCGGT	2 cut(s)	88, 993
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	4 cut(s)	74, 78, 316, 1072
AsuII	TTCGAA	1 cut(s)	704
AvaI	CYCGRG	2 cut(s)	445, 1112
AvaII	GGWCC	1 cut(s)	263
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BamHI	GGATCC	1 cut(s)	814
BbsI	GAAGAC	4 cut(s)	753, 1206, 1307, 1445
BbvI	GCAGC	2 cut(s)	377, 951
BccI	CCATC	3 cut(s)	655, 920, 1006
BceAI	ACGGC	1 cut(s)	815
BcgI	CGANNNNNNTGC	2 cut(s)	684, 718
BciT130I	CCWGG	2 cut(s)	261, 1058
BclI	TGATCA	1 cut(s)	685
BcoDI	GTCTC	6 cut(s)	89, 448, 756, 783, 1160, 1267
BfaI	CTAG	4 cut(s)	972, 1037, 1091, 1446
BfmI	CTRYAG	2 cut(s)	622, 1460
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	2 cut(s)	366, 940
BlsI	GCNGC	2 cut(s)	367, 941
Bme1390I	CCNGG	2 cut(s)	261, 1058
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	445, 1112
BmgBI	CACGTC	1 cut(s)	1170
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	2 cut(s)	261, 1058
BmsI	GCATC	1 cut(s)	1084
BpiI	GAAGAC	4 cut(s)	753, 1206, 1307, 1445
BpmI	CTGGAG	1 cut(s)	1100
Bpu14I	TTCGAA	1 cut(s)	704
BpuEI	CTTGAG	3 cut(s)	568, 1234, 1350
BsaI	GGTCTC	1 cut(s)	448
BsaWI	WCCGGW	3 cut(s)	88, 993, 1507
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	1216
Bse118I	RCCGGY	2 cut(s)	88, 993
Bse3DI	GCAATG	2 cut(s)	355, 799
BseBI	CCWGG	2 cut(s)	261, 1058
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	1216
BseMI	GCAATG	2 cut(s)	355, 799
BseMII	CTCAG	1 cut(s)	1335
BseRI	GAGGAG	4 cut(s)	93, 157, 540, 945
BseXI	GCAGC	2 cut(s)	377, 951
BshTI	ACCGGT	2 cut(s)	88, 993
BsiHKCI	CYCGRG	2 cut(s)	445, 1112
BsiSI	CCGG	3 cut(s)	89, 994, 1508
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	1216
BsmAI	GTCTC	6 cut(s)	89, 448, 756, 783, 1160, 1267
BsmBI	CGTCTC	2 cut(s)	1160, 1267
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	448
BsoBI	CYCGRG	2 cut(s)	445, 1112
Bsp119I	TTCGAA	1 cut(s)	704
BspACI	CCGC	1 cut(s)	648
BspCNI	CTCAG	1 cut(s)	1336
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	816
BspPI	GGATC	6 cut(s)	227, 402, 542, 809, 822, 1286
BspQI	GCTCTTC	1 cut(s)	991
BspT104I	TTCGAA	1 cut(s)	704
BspTNI	GGTCTC	1 cut(s)	448
BsrDI	GCAATG	2 cut(s)	355, 799
BsrFI	RCCGGY	2 cut(s)	88, 993
BssAI	RCCGGY	2 cut(s)	88, 993
Bst2UI	CCWGG	2 cut(s)	261, 1058
Bst4CI	ACNGT	5 cut(s)	389, 767, 839, 1464, 1485
BstAPI	GCANNNNNTGC	1 cut(s)	945
BstBI	TTCGAA	1 cut(s)	704
BstC8I	GCNNGC	2 cut(s)	982, 1472
BstDEI	CTNAG	2 cut(s)	521, 1344
BstF5I	GGATG	1 cut(s)	175
BstMAI	GTCTC	6 cut(s)	89, 448, 756, 783, 1160, 1267
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 945, 977, 1318
BstNI	CCWGG	2 cut(s)	261, 1058
BstSCI	CCNGG	2 cut(s)	259, 1056
BstSFI	CTRYAG	2 cut(s)	622, 1460
BstV1I	GCAGC	2 cut(s)	377, 951
BstV2I	GAAGAC	4 cut(s)	753, 1206, 1307, 1445
BstX2I	RGATCY	2 cut(s)	157, 814
BstXI	CCANNNNNNTGG	1 cut(s)	893
BstYI	RGATCY	2 cut(s)	157, 814
BtrI	CACGTC	1 cut(s)	1170
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	917
BtsIMutI	CAGTG	3 cut(s)	394, 917, 1263
Cac8I	GCNNGC	2 cut(s)	982, 1472
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	688
Cfr10I	RCCGGY	2 cut(s)	88, 993
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	701
CsiI	ACCWGGT	1 cut(s)	1056
Csp6I	GTAC	1 cut(s)	405
CspAI	ACCGGT	2 cut(s)	88, 993
CspCI	CAANNNNNGTGG	2 cut(s)	1239, 1274
CviAII	CATG	4 cut(s)	568, 689, 923, 1527
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	521, 1344
EciI	GGCGGA	1 cut(s)	663
Eco31I	GGTCTC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	3 cut(s)	227, 288, 1442
Eco88I	CYCGRG	2 cut(s)	445, 1112
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	259, 1056
EcoT22I	ATGCAT	1 cut(s)	255
Esp3I	CGTCTC	2 cut(s)	1160, 1267
FaeI	CATG	4 cut(s)	571, 692, 926, 1530
FalI	AAGNNNNNCTT	2 cut(s)	973, 1005
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	4 cut(s)	567, 688, 922, 1526
FbaI	TGATCA	1 cut(s)	685
Fnu4HI	GCNGC	2 cut(s)	366, 940
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	366, 940
FspBI	CTAG	4 cut(s)	972, 1037, 1091, 1446
GluI	GCNGC	2 cut(s)	366, 940
GsuI	CTGGAG	1 cut(s)	1100
HapII	CCGG	3 cut(s)	89, 994, 1508
HgaI	GACGC	1 cut(s)	701
Hin1II	CATG	4 cut(s)	571, 692, 926, 1530
HincII	GTYRAC	2 cut(s)	485, 835
HindII	GTYRAC	2 cut(s)	485, 835
HindIII	AAGCTT	1 cut(s)	1319
HpaII	CCGG	3 cut(s)	89, 994, 1508
HphI	GGTGA	4 cut(s)	74, 78, 316, 1072
Hpy166II	GTNNAC	4 cut(s)	485, 835, 1063, 1139
Hpy188I	TCNGA	8 cut(s)	207, 237, 382, 399, 805, 1006, 1045, 1165
Hpy8I	GTNNAC	4 cut(s)	485, 835, 1063, 1139
HpyAV	CCTTC	2 cut(s)	541, 959
HpyCH4III	ACNGT	5 cut(s)	389, 767, 839, 1464, 1485
HpyCH4IV	ACGT	3 cut(s)	720, 1158, 1169
HpyCH4V	TGCA	6 cut(s)	253, 365, 610, 853, 922, 948
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 945, 977, 1318
HpyF3I	CTNAG	2 cut(s)	521, 1344
HpySE526I	ACGT	3 cut(s)	720, 1158, 1169
Hsp92II	CATG	4 cut(s)	571, 692, 926, 1530
Ksp22I	TGATCA	1 cut(s)	685
LguI	GCTCTTC	1 cut(s)	991
LmnI	GCTCC	2 cut(s)	596, 968
Lsp1109I	GCAGC	2 cut(s)	377, 951
LweI	GCATC	1 cut(s)	1084
MabI	ACCWGGT	1 cut(s)	1056
MaeI	CTAG	4 cut(s)	972, 1037, 1091, 1446
MaeII	ACGT	3 cut(s)	720, 1158, 1169
MaeIII	GTNAC	2 cut(s)	1172, 1497
MflI	RGATCY	2 cut(s)	157, 814
MluCI	AATT	4 cut(s)	82, 540, 881, 1025
MlyI	GAGTC	3 cut(s)	421, 575, 785
MmeI	TCCRAC	1 cut(s)	618
Mph1103I	ATGCAT	1 cut(s)	255
MseI	TTAA	7 cut(s)	128, 149, 165, 821, 1028, 1119, 1437
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	3 cut(s)	89, 994, 1508
MspR9I	CCNGG	2 cut(s)	261, 1058
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	2 cut(s)	261, 1058
MwoI	GCNNNNNNNGC	4 cut(s)	365, 945, 977, 1318
NlaIII	CATG	4 cut(s)	571, 692, 926, 1530
NlaIV	GGNNCC	1 cut(s)	816
NsiI	ATGCAT	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	704
PaeR7I	CTCGAG	1 cut(s)	1112
PagI	TCATGA	1 cut(s)	688
PciSI	GCTCTTC	1 cut(s)	991
PcsI	WCGNNNNNNNCGW	1 cut(s)	960
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	8 cut(s)	32, 377, 572, 1040, 1145, 1348, 1357, 1402
PinAI	ACCGGT	2 cut(s)	88, 993
PkrI	GCNGC	2 cut(s)	367, 941
PleI	GAGTC	3 cut(s)	420, 575, 784
PpsI	GAGTC	3 cut(s)	420, 575, 784
PpuMI	RGGWCCY	1 cut(s)	263
PshBI	ATTAAT	1 cut(s)	821
Psp1406I	AACGTT	1 cut(s)	1158
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	259, 1056
PspGI	CCWGG	2 cut(s)	259, 1056
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	263
PspPPI	RGGWCCY	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	157, 814
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	991
SaqAI	TTAA	7 cut(s)	128, 149, 165, 821, 1028, 1119, 1437
SatI	GCNGC	2 cut(s)	366, 940
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	421, 575, 785
ScrFI	CCNGG	2 cut(s)	261, 1058
SexAI	ACCWGGT	1 cut(s)	1056
SfaNI	GCATC	1 cut(s)	1084
SfcI	CTRYAG	2 cut(s)	622, 1460
Sfr274I	CTCGAG	1 cut(s)	1112
SfuI	TTCGAA	1 cut(s)	704
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	1112
SmlI	CTYRAG	4 cut(s)	583, 1112, 1249, 1365
SmoI	CTYRAG	4 cut(s)	583, 1112, 1249, 1365
Sse9I	AATT	4 cut(s)	82, 540, 881, 1025
SsiI	CCGC	1 cut(s)	648
SspMI	CTAG	4 cut(s)	972, 1037, 1091, 1446
StyD4I	CCNGG	2 cut(s)	259, 1056
TaaI	ACNGT	5 cut(s)	389, 767, 839, 1464, 1485
TaiI	ACGT	3 cut(s)	723, 1161, 1172
TaqI	TCGA	3 cut(s)	704, 1113, 1143
TasI	AATT	4 cut(s)	82, 540, 881, 1025
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	8 cut(s)	32, 377, 572, 1040, 1145, 1348, 1357, 1402
Tru1I	TTAA	7 cut(s)	128, 149, 165, 821, 1028, 1119, 1437
Tru9I	TTAA	7 cut(s)	128, 149, 165, 821, 1028, 1119, 1437
TscAI	CASTG	3 cut(s)	394, 924, 1263
TseI	GCWGC	2 cut(s)	365, 939
TspDTI	ATGAA	2 cut(s)	690, 789
TspGWI	ACGGA	3 cut(s)	1124, 1191, 1291
TspRI	CASTG	3 cut(s)	394, 924, 1263
VpaK11BI	GGWCC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	821
XapI	RAATTY	2 cut(s)	82, 881
XbaI	TCTAGA	1 cut(s)	1036
XhoI	CTCGAG	1 cut(s)	1112
XspI	CTAG	4 cut(s)	972, 1037, 1091, 1446
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.