FvH4_3g41590

WPP domain-interacting protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
34924006 .. 34927582
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41590.t1

Sequence Viewer

Length: 1788 bp
ATGGATTTGGGGAGTGAATCTGTGGATGATAATGTAAAGCCTGAACCAGTGTCTCATGGTGTTGTTGATGATGATGATGGGGATAGTGTTGAGATTAGGAACAATGGGTCATGTGCTAATGGGATAGGAAATGGAGTTGGGACTGGAGATAATCATGTTGACACTGCCCCAGCAGTTGGTTTGACTCTTTCGGCCGGGAAGTCTCCGGTGGGAGAGTCGAATTCTGCTCCGAAAGGGCAGGGGTTGAGGAGGTGGAGGCGAATTCCGAGAATTGTGGGTCATGATGGCGGTGGGAATGCGGTAGATGATTCTAGTAGGAAGAGGGGTATGCCTGGACTTGAAATTCCTGATAAGGGTCGGAATGCTTCAGTTGAGGCTGATCATAATAACAGTGAGGGGTCGGTGGGATCAGTGAATATGATGAGAAATGCGGGAGTTGGTGATGGGTTTGGATTTGGTGGTGCTAGTCCGGATTCTAGATACGCGGGTGGTTCTGGTTTTGCTGCTCGTGCGGATTCTGAGAACAGTGAGGATCGGAGTAGCAAGTCGTCCACAGCTGCCAGTGTTCCAAGGGGAAGGTACGATGTGCCTCCTTTAACAGCGAGCCAACCGCGGAATAGGGCGAAGAATGCTAGCACAAAGAGTCGGACTAATTCAGCTCAAAGTGCTCAACCGGGGAGGGGACAGAGTGAAAGCAGTAAGAAGCTTAGAGGAGACAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAGTCTGACTCAAGAAGCTCCAACTTTGTCTTTATGCAGGCTGCACCTCTTTCCAGTAACGGGAAGCAAAGTAGAAGGTCAATGAGTCAGGACAGAGAAAATAGTGATGAAGTTCAAACTGGTTATCGGAGAGAGAATGCAGTAGAAGCTGAAGAATTTTTACAAGATCTAGATACCGACTTGTCATGGGTGGGTAAGCTAGACAAAAAGAAGAAGCATGGGTCTTTTGCAGATATGGATGCTCTAGCTGAGTCTATGTTCAATTTCCAGACTGTACAAGAAGCACTCCAGAAAGAGGTTCAGAAATTTGGGGAGATTGGGAAAGGACCTGTATCAAGTGGTGATAATTTAGTGAAGCCTTTGGACCCCTCTTCAAGTGATCTGGAAATTATTGAATCCAACTTATCTGAGCAGTTGGGTTCTGAAAAGATCGGACAAACTTTTTCTAATTCCTTGGAAGCACAGATATTGAGTTTGAAACAGCATGTGAAACTTATCGAAGGCAAGCTGGATGAGACTAGGGCTAGGCTTGAGGTGAAGGAGTCCAGGGTTGCTGAACTGGAATATATTGTTAACATTAGCAAGTCTTTTAAAGAAGAATCAGGTAGTACCATAGAGTTACAGGTTGAACAATATAGAGAGCTAGAGGCCGAGGTTGAAAGCCTGTTTAGGCAAAAGATTGAAGCAGAGGTTGAGTATATTGTAATTAGAACAACAACACAGAAGGTGAAGTTTGCTACAGGTGACCAAATTGCACTCATTGAGGAGCAAGAAGCAGTGGCTGGAGAACAAGCACGGATACTGAACAAGCTTGGGGAAACACAAATTAGGGCTGCAAAGTTAAAAGAGCGAACAGAGGAATTGGGAAAGTATTATGGTGATATTTTAGGGACAGAAGACGTTTTTACCATGCCGAATAAATTATTTAAGGTTAGCTCCTGTTTTTTTGTCCAGTTGCTTTTGTTGGTCCTGGCCGTATGGTTTTTTTTGTTGCAGTCATCTCCCCCTCAAGGGGTGGTTGTACCCACCTAA

Protein Analysis

596

Amino Acids

64.56

Weight (kDa)

5.18

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AccII CGCG 2 cut(s) 485, 613
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 7 cut(s) 288, 299, 431, 485, 512, 611, 613
AclWI GGATC 2 cut(s) 415, 540
AcoI YGGCCR 2 cut(s) 192, 1728
AcsI RAATTY 5 cut(s) 220, 261, 342, 911, 1061
AcuI CTGAAG 2 cut(s) 351, 927
AfaI GTAC 4 cut(s) 581, 1032, 1366, 1779
AfiI CCNNNNNNNGG 8 cut(s) 176, 353, 680, 816, 1051, 1766, 1767, 1768
AgsI TTSAA 9 cut(s) 341, 872, 1018, 1131, 1151, 1234, 1385, 1415, 1439
AjnI CCWGG 3 cut(s) 331, 1301, 1725
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 4 cut(s) 57, 207, 708, 1265
AlwI GGATC 2 cut(s) 415, 540
AlwNI CAGNNNCTG 1 cut(s) 1538
Aor13HI TCCGGA 1 cut(s) 469
AoxI GGCC 3 cut(s) 192, 1404, 1728
ApeKI GCWGC 4 cut(s) 503, 557, 797, 1589
ApoI RAATTY 5 cut(s) 220, 261, 342, 911, 1061
AspS9I GGNCC 3 cut(s) 1082, 1120, 1723
AsuC2I CCSGG 2 cut(s) 196, 675
AsuHPI GGTGA 6 cut(s) 452, 1109, 1303, 1495, 1511, 1646
AsuNHI GCTAGC 1 cut(s) 632
AvaII GGWCC 3 cut(s) 1082, 1120, 1723
BaeI ACNNNNGTAYC 2 cut(s) 472, 505
BarI GAAGNNNNNNTAC 2 cut(s) 900, 932
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 1659
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 4 cut(s) 490, 544, 784, 1576
BccI CCATC 3 cut(s) 71, 278, 437
BceAI ACGGC 1 cut(s) 1715
BciT130I CCWGG 3 cut(s) 333, 1303, 1727
BciVI GTATCC 1 cut(s) 1548
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 2 cut(s) 196, 675
BcoDI GTCTC 4 cut(s) 57, 207, 708, 1265
BfmI CTRYAG 1 cut(s) 1494
BfuI GTATCC 1 cut(s) 1548
BglII AGATCT 1 cut(s) 922
BisI GCNGC 4 cut(s) 504, 558, 798, 1590
BlsI GCNGC 4 cut(s) 505, 559, 799, 1591
Bme1390I CCNGG 5 cut(s) 196, 333, 675, 1303, 1727
Bme18I GGWCC 3 cut(s) 1082, 1120, 1723
BmgT120I GGNCC 3 cut(s) 1082, 1120, 1723
BmiI GGNNCC 1 cut(s) 1122
BmrFI CCNGG 5 cut(s) 196, 333, 675, 1303, 1727
BmsI GCATC 1 cut(s) 985
BmtI GCTAGC 1 cut(s) 636
BpiI GAAGAC 1 cut(s) 1659
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 3 cut(s) 165, 1028, 1560
BpuEI CTTGAG 3 cut(s) 751, 1307, 1749
BpuMI CCSGG 2 cut(s) 196, 675
BsaJI CCNNGG 6 cut(s) 569, 611, 674, 1209, 1302, 1407
BsaWI WCCGGW 2 cut(s) 205, 469
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 8 cut(s) 176, 353, 680, 816, 1051, 1766, 1767, 1768
Bse1I ACTGG 7 cut(s) 47, 148, 561, 810, 880, 1320, 1708
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 3 cut(s) 333, 1303, 1727
BseDI CCNNGG 6 cut(s) 569, 611, 674, 1209, 1302, 1407
BseGI GGATG 3 cut(s) 31, 1000, 1273
BseLI CCNNNNNNNGG 8 cut(s) 176, 353, 680, 816, 1051, 1766, 1767, 1768
BseMII CTCAG 3 cut(s) 510, 996, 1155
BseNI ACTGG 7 cut(s) 47, 148, 561, 810, 880, 1320, 1708
BseRI GAGGAG 3 cut(s) 262, 726, 1535
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 4 cut(s) 490, 544, 784, 1576
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 2 cut(s) 485, 613
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 3 cut(s) 194, 1406, 1730
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 670
BsiSI CCGG 4 cut(s) 195, 206, 470, 674
BslFI GGGAC 3 cut(s) 154, 696, 1660
BslI CCNNNNNNNGG 8 cut(s) 176, 353, 680, 816, 1051, 1766, 1767, 1768
BsmAI GTCTC 4 cut(s) 57, 207, 708, 1265
BsmFI GGGAC 3 cut(s) 154, 696, 1660
BsmI GAATGC 4 cut(s) 301, 367, 634, 898
BsnI GGCC 3 cut(s) 194, 1406, 1730
Bsp1286I GDGCHC 1 cut(s) 670
Bsp13I TCCGGA 1 cut(s) 469
Bsp1407I TGTACA 1 cut(s) 1030
Bsp143I GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
BspACI CCGC 7 cut(s) 288, 299, 431, 485, 512, 611, 613
BspANI GGCC 3 cut(s) 194, 1406, 1730
BspCNI CTCAG 3 cut(s) 511, 997, 1156
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 2 cut(s) 485, 613
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 1122
BspOI GCTAGC 1 cut(s) 636
BspPI GGATC 2 cut(s) 415, 540
BsrGI TGTACA 1 cut(s) 1030
BsrI ACTGG 7 cut(s) 47, 148, 561, 810, 880, 1320, 1708
BssECI CCNNGG 6 cut(s) 569, 611, 674, 1209, 1302, 1407
BssMI GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
BssSI CACGAG 1 cut(s) 507
BssT1I CCWWGG 2 cut(s) 569, 1209
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 3 cut(s) 333, 1303, 1727
Bst4CI ACNGT 3 cut(s) 392, 527, 1030
Bst6I CTCTTC 2 cut(s) 314, 1132
BstAUI TGTACA 1 cut(s) 1030
BstC8I GCNNGC 4 cut(s) 604, 634, 795, 1262
BstDEI CTNAG 4 cut(s) 519, 707, 1005, 1164
BstDSI CCRYGG 1 cut(s) 611
BstEII GGTNACC 1 cut(s) 1499
BstF5I GGATG 3 cut(s) 31, 1000, 1273
BstFNI CGCG 2 cut(s) 485, 613
BstKTI GATC 6 cut(s) 382, 410, 535, 925, 1138, 1188
BstMAI GTCTC 4 cut(s) 57, 207, 708, 1265
BstMBI GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 4 cut(s) 509, 629, 665, 902
BstNI CCWGG 3 cut(s) 333, 1303, 1727
BstNSI RCATGY 1 cut(s) 1244
BstPI GGTNACC 1 cut(s) 1499
BstSCI CCNGG 5 cut(s) 194, 331, 673, 1301, 1725
BstSFI CTRYAG 1 cut(s) 1494
BstUI CGCG 2 cut(s) 485, 613
BstV1I GCAGC 4 cut(s) 490, 544, 784, 1576
BstV2I GAAGAC 1 cut(s) 1659
BstX2I RGATCY 1 cut(s) 922
BstYI RGATCY 1 cut(s) 922
BstZI CGGCCG 1 cut(s) 192
BsuI GTATCC 1 cut(s) 1548
BsuRI GGCC 3 cut(s) 194, 1406, 1730
BtgI CCRYGG 1 cut(s) 611
BtsCI GGATG 3 cut(s) 31, 1000, 1273
BtsI GCAGTG 2 cut(s) 162, 1539
BtsIMutI CAGTG 7 cut(s) 54, 162, 397, 417, 532, 568, 1539
Cac8I GCNNGC 4 cut(s) 604, 634, 795, 1262
CaiI CAGNNNCTG 1 cut(s) 1538
CciI TCATGA 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 1082, 1120, 1723
Cfr42I CCGCGG 1 cut(s) 614
Csp6I GTAC 4 cut(s) 580, 1031, 1365, 1778
CviAII CATG 9 cut(s) 56, 111, 155, 281, 754, 942, 974, 1241, 1666
CviQI GTAC 4 cut(s) 580, 1031, 1365, 1778
DdeI CTNAG 4 cut(s) 519, 707, 1005, 1164
DpnI GATC 6 cut(s) 381, 409, 534, 924, 1137, 1187
DpnII GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
DraI TTTAAA 1 cut(s) 1348
EaeI YGGCCR 2 cut(s) 192, 1728
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 2 cut(s) 314, 1132
EarI CTCTTC 2 cut(s) 314, 1132
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 569, 1209
Eco47I GGWCC 3 cut(s) 1082, 1120, 1723
Eco52I CGGCCG 1 cut(s) 192
Eco57I CTGAAG 2 cut(s) 351, 927
Eco91I GGTNACC 1 cut(s) 1499
EcoO109I RGGNCCY 1 cut(s) 1082
EcoO65I GGTNACC 1 cut(s) 1499
EcoRI GAATTC 2 cut(s) 220, 261
EcoRII CCWGG 3 cut(s) 331, 1301, 1725
EcoT14I CCWWGG 2 cut(s) 569, 1209
ErhI CCWWGG 2 cut(s) 569, 1209
FaeI CATG 9 cut(s) 59, 114, 158, 284, 757, 945, 977, 1244, 1669
FaqI GGGAC 3 cut(s) 154, 696, 1660
FatI CATG 9 cut(s) 55, 110, 154, 280, 753, 941, 973, 1240, 1665
FauI CCCGC 2 cut(s) 424, 478
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 4 cut(s) 504, 558, 798, 1590
FokI GGATG 3 cut(s) 38, 1007, 1280
Fsp4HI GCNGC 4 cut(s) 504, 558, 798, 1590
GluI GCNGC 4 cut(s) 504, 558, 798, 1590
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 3 cut(s) 165, 1028, 1560
HaeIII GGCC 3 cut(s) 194, 1406, 1730
HapII CCGG 4 cut(s) 195, 206, 470, 674
Hin1II CATG 9 cut(s) 59, 114, 158, 284, 757, 945, 977, 1244, 1669
HincII GTYRAC 2 cut(s) 160, 1330
HindII GTYRAC 2 cut(s) 160, 1330
HindIII AAGCTT 2 cut(s) 704, 1565
HpaI GTTAAC 1 cut(s) 1330
HpaII CCGG 4 cut(s) 195, 206, 470, 674
HphI GGTGA 6 cut(s) 452, 1109, 1303, 1495, 1511, 1646
Hpy166II GTNNAC 3 cut(s) 160, 552, 1330
Hpy8I GTNNAC 3 cut(s) 160, 552, 1330
HpyAV CCTTC 6 cut(s) 570, 727, 825, 1250, 1288, 1474
HpyCH4III ACNGT 3 cut(s) 392, 527, 1030
HpyCH4IV ACGT 1 cut(s) 1656
HpyCH4V TGCA 7 cut(s) 793, 800, 896, 986, 1511, 1592, 1750
HpyF10VI GCNNNNNNNGC 4 cut(s) 509, 629, 665, 902
HpyF3I CTNAG 4 cut(s) 519, 707, 1005, 1164
HpySE526I ACGT 1 cut(s) 1656
Hsp92II CATG 9 cut(s) 59, 114, 158, 284, 757, 945, 977, 1244, 1669
Kpn2I TCCGGA 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 379
KspAI GTTAAC 1 cut(s) 1330
KspI CCGCGG 1 cut(s) 614
Kzo9I GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
LmnI GCTCC 4 cut(s) 232, 779, 1522, 1697
Lsp1109I GCAGC 4 cut(s) 490, 544, 784, 1576
LweI GCATC 1 cut(s) 985
MaeII ACGT 1 cut(s) 1656
MaeIII GTNAC 3 cut(s) 812, 1374, 1499
MalI GATC 6 cut(s) 381, 409, 534, 924, 1137, 1187
MboI GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
MboII GAAGA 7 cut(s) 331, 637, 920, 979, 1119, 1364, 1664
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 1 cut(s) 670
MlyI GAGTC 8 cut(s) 178, 224, 652, 758, 767, 850, 1016, 1307
MmeI TCCRAC 4 cut(s) 338, 626, 801, 1179
MroI TCCGGA 1 cut(s) 469
MseI TTAA 5 cut(s) 596, 1329, 1347, 1598, 1683
MspA1I CMGCKG 2 cut(s) 557, 613
MspI CCGG 4 cut(s) 195, 206, 470, 674
MspR9I CCNGG 5 cut(s) 196, 333, 675, 1303, 1727
Mva1269I GAATGC 4 cut(s) 301, 367, 634, 898
MvaI CCWGG 3 cut(s) 333, 1303, 1727
MvnI CGCG 2 cut(s) 485, 613
MwoI GCNNNNNNNGC 4 cut(s) 509, 629, 665, 902
NciI CCSGG 2 cut(s) 196, 675
NdeII GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
NheI GCTAGC 1 cut(s) 632
NlaIII CATG 9 cut(s) 59, 114, 158, 284, 757, 945, 977, 1244, 1669
NlaIV GGNNCC 1 cut(s) 1122
NmeAIII GCCGAG 1 cut(s) 1432
NmuCI GTSAC 1 cut(s) 1499
NspI RCATGY 1 cut(s) 1244
PagI TCATGA 1 cut(s) 280
PctI GAATGC 4 cut(s) 301, 367, 634, 898
PfeI GAWTC 6 cut(s) 17, 308, 473, 515, 1151, 1355
PflFI GACNNNGTC 1 cut(s) 719
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 4 cut(s) 505, 559, 799, 1591
PleI GAGTC 8 cut(s) 178, 223, 651, 758, 766, 849, 1015, 1306
PpsI GAGTC 8 cut(s) 178, 223, 651, 758, 766, 849, 1015, 1306
PpuMI RGGWCCY 1 cut(s) 1082
Psp5II RGGWCCY 1 cut(s) 1082
Psp6I CCWGG 3 cut(s) 331, 1301, 1725
PspEI GGTNACC 1 cut(s) 1499
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 3 cut(s) 331, 1301, 1725
PspN4I GGNNCC 1 cut(s) 1122
PspPI GGNCC 3 cut(s) 1082, 1120, 1723
PspPPI RGGWCCY 1 cut(s) 1082
PstNI CAGNNNCTG 1 cut(s) 1538
PsuI RGATCY 1 cut(s) 922
PsyI GACNNNGTC 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 4 cut(s) 581, 1032, 1366, 1779
RsaNI GTAC 4 cut(s) 580, 1031, 1365, 1778
SacII CCGCGG 1 cut(s) 614
SaqAI TTAA 5 cut(s) 596, 1329, 1347, 1598, 1683
SatI GCNGC 4 cut(s) 504, 558, 798, 1590
Sau3AI GATC 6 cut(s) 379, 407, 532, 922, 1135, 1185
Sau96I GGNCC 3 cut(s) 1082, 1120, 1723
SchI GAGTC 8 cut(s) 178, 224, 652, 758, 767, 850, 1016, 1307
ScrFI CCNGG 5 cut(s) 196, 333, 675, 1303, 1727
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 1 cut(s) 1494
Sfr303I CCGCGG 1 cut(s) 614
SgrBI CCGCGG 1 cut(s) 614
SinI GGWCC 3 cut(s) 1082, 1120, 1723
SmlI CTYRAG 3 cut(s) 766, 1286, 1764
SmoI CTYRAG 3 cut(s) 766, 1286, 1764
SsiI CCGC 7 cut(s) 288, 299, 431, 485, 512, 611, 613
StyD4I CCNGG 5 cut(s) 194, 331, 673, 1301, 1725
StyI CCWWGG 2 cut(s) 569, 1209
TaaI ACNGT 3 cut(s) 392, 527, 1030
TaiI ACGT 1 cut(s) 1659
TaqI TCGA 3 cut(s) 218, 729, 1254
TatI WGTACW 1 cut(s) 1030
TfiI GAWTC 6 cut(s) 17, 308, 473, 515, 1151, 1355
Tru1I TTAA 5 cut(s) 596, 1329, 1347, 1598, 1683
Tru9I TTAA 5 cut(s) 596, 1329, 1347, 1598, 1683
TscAI CASTG 7 cut(s) 54, 169, 397, 417, 532, 568, 1539
TseFI GTSAC 1 cut(s) 1499
TseI GCWGC 4 cut(s) 503, 557, 797, 1589
Tsp45I GTSAC 1 cut(s) 1499
TspDTI ATGAA 1 cut(s) 879
TspGWI ACGGA 1 cut(s) 1567
TspRI CASTG 7 cut(s) 54, 169, 397, 417, 532, 568, 1539
Tth111I GACNNNGTC 1 cut(s) 719
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 3 cut(s) 1082, 1120, 1723
XapI RAATTY 5 cut(s) 220, 261, 342, 911, 1061
XbaI TCTAGA 2 cut(s) 476, 925
XceI RCATGY 1 cut(s) 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.