Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007861

Physical Location & Seq

Genomic Coordinates Forward (+)

60223315 .. 60224229

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0433200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGACCTAGATGGAAAGGAAAGGATGCAAAAGCTAAAGCTCTTGCAGATCCCATGTCAAGTATAGTATTGCAGCTTCAGTCTTCTCTAGTCCAATCAGATGCCCAAGGATTCTTGTGTGGGTGCAATGTACTTCTTGAAGCAGGACCAAAGCAAACTGATCTCCTTCTTCGTGCCTGCTTTGGCGAACCCATAAAAAACTTGTCTGGTGAACCCATTATCAACAAAAACAATAAGCATTGGTTTTACTTTGGCATGGAAGAGGCATTCTTCCTATGCAATTCTCTAAAATGCCTCAAGATACTTGATGGTTTAGATAACTGCCCAAAGAATGATCAAGAACTTTTCCAGTACATGAAATCTAAGAAAACAACATTCCCCGATTCTTACAAGGCTTATTCTCATCTTCGGCTGAAAAATTGGGTTGTGATGTACGATTCCAATTACTGTGCAGACTTTGTTGCCTACCGCCACCATCCCTCTCTGGTCCACTCTGAATTTGTTGTGATTCTGTTATCAGAAGGAGATAGCGAGTCAAATGATCGATTGAGGGTGTGGTCTGATGTCCGTGGCACCAAAAGGCTGTGTAAAGTTATTAAGAAGGCATTGCTAGTTCTTAGCGTTGATAAAAATGGTCATGATGCTACCTCTCCATCATGTTTGGAAGGATACACAGTTACAGAGCACACAATTTCGAGATGGAGTCCGGAACAATGCCATGAGGATCACCCGAAAGATGATTGGGAACCAAGTAGTAGTTCTGTGCCATTAATGCCTAGCGGAACCACATTAAGGTCTAAAGTGGCTTTAGCCCCACGGCAAGTTTCTCTCGATCAAATATTCAAGGCTTTGGTTATTTTCTTTTGGACAATCGTAGTCTTCGGTTTTGGATTTGCTTTAGGAAAATTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006996 GO:0006997 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

34.27

Weight (kDa)

8.25

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_int_endo	PF01974	126 - 212	4.3e-13	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26455 AT5G56210
fragaria_vesca	FvH4_3g41590 FvH4_3g41590
malus_domestica	MD03G1043100.v1.1 MD11G1046100.v1.1
prunus_persica	Prupe.6G035500_v2.0.a1 Prupe.6G035500_v2.0.a1
pyrus_communis	pycom03g03330 pycom11g03740
rosa_chinensis	RchiOBHm_Chr5g0074601
rosa_laevigata	RLG00000036490
rosa_multiflora	Rmu_sc0001104.1_g000010 Rmu_sc0025049.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006970 Rroxscaffold_2G00102040 Rroxscaffold_3G00254370
rosa_rugosa	Rorug05G0433000 Rorug05G0433100 Rorug05G0433200
rosa_samantha	Rh5AG490300 Rh5BG511200 Rh5CG534900 Rh5DG523400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AccIII	TCCGGA	1 cut(s)	706
AciI	CCGC	2 cut(s)	469, 780
AclWI	GGATC	2 cut(s)	44, 732
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	3 cut(s)	132, 353, 434
AfiI	CCNNNNNNNGG	1 cut(s)	792
AgsI	TTSAA	2 cut(s)	140, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	742, 774
AluBI	AGCT	3 cut(s)	35, 41, 76
AluI	AGCT	3 cut(s)	35, 41, 76
Alw21I	GWGCWC	1 cut(s)	687
AlwI	GGATC	2 cut(s)	44, 732
Aor13HI	TCCGGA	1 cut(s)	706
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	497
AseI	ATTAAT	1 cut(s)	770
AspS9I	GGNCC	3 cut(s)	5, 146, 487
AsuHPI	GGTGA	2 cut(s)	221, 719
AvaII	GGWCC	3 cut(s)	5, 146, 487
BanI	GGYRCC	1 cut(s)	572
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
BbsI	GAAGAC	2 cut(s)	75, 871
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	5 cut(s)	6, 302, 483, 661, 693
BceAI	ACGGC	1 cut(s)	833
BciVI	GTATCC	1 cut(s)	662
BclI	TGATCA	1 cut(s)	334
BfaI	CTAG	4 cut(s)	9, 89, 611, 777
BfuI	GTATCC	1 cut(s)	662
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme18I	GGWCC	3 cut(s)	5, 146, 487
BmgT120I	GGNCC	3 cut(s)	5, 146, 487
BmiI	GGNNCC	4 cut(s)	6, 574, 747, 784
BmsI	GCATC	3 cut(s)	16, 91, 631
BpiI	GAAGAC	2 cut(s)	75, 871
BpuEI	CTTGAG	1 cut(s)	281
Bsa29I	ATCGAT	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	106, 568, 815
BsaWI	WCCGGW	1 cut(s)	706
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	2 cut(s)	133, 605
BseAI	TCCGGA	1 cut(s)	706
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	3 cut(s)	106, 568, 815
BseGI	GGATG	2 cut(s)	31, 475
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMI	GCAATG	2 cut(s)	133, 605
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	572
BshVI	ATCGAT	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	707
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp13I	TCCGGA	1 cut(s)	706
Bsp143I	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
BspACI	CCGC	2 cut(s)	469, 780
BspDI	ATCGAT	1 cut(s)	544
BspEI	TCCGGA	1 cut(s)	706
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	4 cut(s)	6, 574, 747, 784
BspPI	GGATC	2 cut(s)	44, 732
BspT107I	GGYRCC	1 cut(s)	572
BsrDI	GCAATG	2 cut(s)	133, 605
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	106, 568, 815
BssMI	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	2 cut(s)	449, 676
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	363, 617
BstDSI	CCRYGG	2 cut(s)	568, 815
BstF5I	GGATG	2 cut(s)	31, 475
BstKTI	GATC	6 cut(s)	52, 163, 337, 544, 727, 835
BstMBI	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	772
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	2 cut(s)	75, 871
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	662
BsuTUI	ATCGAT	1 cut(s)	544
BtgI	CCRYGG	2 cut(s)	568, 815
BtsCI	GGATG	2 cut(s)	31, 475
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	637
Cfr13I	GGNCC	3 cut(s)	5, 146, 487
ClaI	ATCGAT	1 cut(s)	544
Csp6I	GTAC	3 cut(s)	131, 352, 433
CviAII	CATG	6 cut(s)	55, 256, 355, 638, 657, 719
CviJI	RGCY	9 cut(s)	35, 41, 76, 395, 412, 583, 806, 812, 848
CviKI_1	RGCY	9 cut(s)	35, 41, 76, 395, 412, 583, 806, 812, 848
CviQI	GTAC	3 cut(s)	131, 352, 433
DdeI	CTNAG	2 cut(s)	363, 617
DpnI	GATC	6 cut(s)	51, 162, 336, 543, 726, 834
DpnII	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	3 cut(s)	5, 146, 487
Eco57I	CTGAAG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	6 cut(s)	58, 259, 358, 641, 660, 722
FaiI	YATR	9 cut(s)	56, 65, 194, 257, 277, 356, 639, 658, 720
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	6 cut(s)	54, 255, 354, 637, 656, 718
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	38, 462
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	4 cut(s)	9, 89, 611, 777
GluI	GCNGC	1 cut(s)	74
HapII	CCGG	1 cut(s)	707
Hin1II	CATG	6 cut(s)	58, 259, 358, 641, 660, 722
HinfI	GANTC	6 cut(s)	111, 383, 437, 508, 533, 703
HpaII	CCGG	1 cut(s)	707
HphI	GGTGA	2 cut(s)	221, 719
Hpy166II	GTNNAC	2 cut(s)	212, 490
Hpy188I	TCNGA	4 cut(s)	100, 496, 520, 562
Hpy188III	TCNNGA	7 cut(s)	137, 298, 338, 638, 696, 707, 830
Hpy8I	GTNNAC	2 cut(s)	212, 490
HpyAV	CCTTC	4 cut(s)	176, 515, 595, 659
HpyCH4III	ACNGT	2 cut(s)	449, 676
HpyCH4V	TGCA	6 cut(s)	29, 47, 73, 126, 279, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	772
HpyF3I	CTNAG	2 cut(s)	363, 617
Hsp92II	CATG	6 cut(s)	58, 259, 358, 641, 660, 722
Kpn2I	TCCGGA	1 cut(s)	706
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
LpnPI	CCDG	6 cut(s)	129, 190, 192, 362, 470, 720
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	3 cut(s)	16, 91, 631
MaeI	CTAG	4 cut(s)	9, 89, 611, 777
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	6 cut(s)	51, 162, 336, 543, 726, 834
MboI	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
MboII	GAAGA	6 cut(s)	75, 161, 262, 272, 398, 871
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	6 cut(s)	280, 418, 442, 497, 690, 905
MlyI	GAGTC	2 cut(s)	542, 712
MnlI	CCTC	6 cut(s)	256, 305, 490, 543, 658, 715
MroI	TCCGGA	1 cut(s)	706
MseI	TTAA	3 cut(s)	597, 770, 791
MspI	CCGG	1 cut(s)	707
Mva1269I	GAATGC	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	772
NdeII	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
NlaIII	CATG	6 cut(s)	58, 259, 358, 641, 660, 722
NlaIV	GGNNCC	4 cut(s)	6, 574, 747, 784
PagI	TCATGA	1 cut(s)	637
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	4 cut(s)	111, 383, 437, 508
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	2 cut(s)	541, 711
PpsI	GAGTC	2 cut(s)	541, 711
PpuMI	RGGWCCY	1 cut(s)	5
PshBI	ATTAAT	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	4 cut(s)	6, 574, 747, 784
PspPI	GGNCC	3 cut(s)	5, 146, 487
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	49
RsaI	GTAC	3 cut(s)	132, 353, 434
RsaNI	GTAC	3 cut(s)	131, 352, 433
SaqAI	TTAA	3 cut(s)	597, 770, 791
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	6 cut(s)	49, 160, 334, 541, 724, 832
Sau96I	GGNCC	3 cut(s)	5, 146, 487
SchI	GAGTC	2 cut(s)	542, 712
SduI	GDGCHC	1 cut(s)	687
SetI	ASST	6 cut(s)	10, 37, 43, 78, 650, 797
SfaNI	GCATC	3 cut(s)	16, 91, 631
SinI	GGWCC	3 cut(s)	5, 146, 487
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	6 cut(s)	280, 418, 442, 497, 690, 905
SsiI	CCGC	2 cut(s)	469, 780
SspI	AATATT	1 cut(s)	840
SspMI	CTAG	4 cut(s)	9, 89, 611, 777
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	449, 676
TaqI	TCGA	3 cut(s)	544, 695, 831
TasI	AATT	6 cut(s)	280, 418, 442, 497, 690, 905
TatI	WGTACW	2 cut(s)	130, 351
TfiI	GAWTC	4 cut(s)	111, 383, 437, 508
Tru1I	TTAA	3 cut(s)	597, 770, 791
Tru9I	TTAA	3 cut(s)	597, 770, 791
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	557
VpaK11BI	GGWCC	3 cut(s)	5, 146, 487
VspI	ATTAAT	1 cut(s)	770
XapI	RAATTY	1 cut(s)	497
XspI	CTAG	4 cut(s)	9, 89, 611, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.