Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025049.1

Orthogroup ID

OG0007861

Physical Location & Seq

Genomic Coordinates Reverse (-)

5517 .. 7381

Gene Structure 1865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025049.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atggaatctgactcaagaagctccaactttgtctttatgcaggctgcacctctgtctagtaacgggaagcaaagtagaagatcaatgagtcaggaaggagaaaatagtgatgaagctcatgcaagtgagcaacaattcagtgaagaagttcaaactggttatcggagagagaatgtggtagaagttgaagatttttcacaagatttagataccgacttgtcatgggagggtaagctacgcaaaagcaagaagcatgggtcctttgctgatatggatcctctagctgagtctatgttcaacttccagactgtacaagaagcactccagaaagaggttcagaaatttggggagattgggaaagaacctatatcacgaggtgataattcagtgaagcctattgacccctcttcaagtgatccggaaattattgaatccaatctatctgaccagttgggttctgaaaagattggacgaactttttcaaattccttggaagcacagatattgactttgaaacagcatgtgaaacttatggaaggcaagctgaatgagactagggctatgcttcaggtgaaggagtccagggttgctgaactggaagatattgttaacattagcaagtcttttaaagaagaatcaggtagtaccgtagagttacaggaggaacaatacagagagctagaggctgaggttgagagcttgttcaggcaaaagattgaagcggaggttgaatatattgtaataaaaactacaacacagaaggtgaagtttgctacaggtgaccaaattgcactcattgaggagcaggaagcagtagctggagaacaagcgcggatactgaacaagcttggggaagcacaaattagggcttcaaagctaaaagaacgaacagaggaattgggaaagtattgcggagatgttttagggacagaagaggtctttactatgcagaagaaattatgtaaggttagctcatgtttttttgtccagttgcttttgttggctttagccatctggttttttttgttacaatcatctccccctcaaggggcggttgtgcccacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006996 GO:0006997 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

39.9

Weight (kDa)

4.79

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26455 AT5G56210
fragaria_vesca	FvH4_3g41590 FvH4_3g41590
malus_domestica	MD03G1043100.v1.1 MD11G1046100.v1.1
prunus_persica	Prupe.6G035500_v2.0.a1 Prupe.6G035500_v2.0.a1
pyrus_communis	pycom03g03330 pycom11g03740
rosa_chinensis	RchiOBHm_Chr5g0074601
rosa_laevigata	RLG00000036490
rosa_multiflora	Rmu_sc0001104.1_g000010 Rmu_sc0025049.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006970 Rroxscaffold_2G00102040 Rroxscaffold_3G00254370
rosa_rugosa	Rorug05G0433000 Rorug05G0433100 Rorug05G0433200
rosa_samantha	Rh5AG490300 Rh5BG511200 Rh5CG534900 Rh5DG523400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	832
AccIII	TCCGGA	1 cut(s)	418
AciI	CCGC	4 cut(s)	722, 832, 912, 1052
AclWI	GGATC	3 cut(s)	269, 282, 410
AcsI	RAATTY	2 cut(s)	341, 484
AcuI	CTGAAG	1 cut(s)	551
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	312, 646
AfiI	CCNNNNNNNGG	4 cut(s)	331, 1046, 1047, 1048
AjnI	CCWGG	1 cut(s)	581
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	3 cut(s)	269, 282, 410
AlwNI	CAGNNNCTG	1 cut(s)	818
Aor13HI	TCCGGA	1 cut(s)	418
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	341, 484
Asp700I	GAANNNNTTC	2 cut(s)	147, 478
AspLEI	GCGC	1 cut(s)	832
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	4 cut(s)	389, 583, 775, 791
AvaII	GGWCC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	1062
BamHI	GGATCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	1019
BciT130I	CCWGG	1 cut(s)	583
BciVI	GTATCC	1 cut(s)	828
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	4 cut(s)	57, 281, 555, 680
BfmI	CTRYAG	1 cut(s)	774
BfuI	GTATCC	1 cut(s)	828
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	259, 276
BmrFI	CCNGG	1 cut(s)	583
BpmI	CTGGAG	2 cut(s)	308, 840
Bpu10I	CCTNAGC	1 cut(s)	687
BpuEI	CTTGAG	1 cut(s)	1029
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	489, 582
BsaWI	WCCGGW	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 1046, 1047, 1048
Bse1I	ACTGG	4 cut(s)	160, 448, 600, 988
Bse8I	GATNNNNATC	1 cut(s)	273
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	583
BseDI	CCNNGG	2 cut(s)	489, 582
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	4 cut(s)	331, 1046, 1047, 1048
BseMII	CTCAG	2 cut(s)	276, 678
BseNI	ACTGG	4 cut(s)	160, 448, 600, 988
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	1062
BseXI	GCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	832
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	4 cut(s)	331, 1046, 1047, 1048
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	940
Bsp1286I	GDGCHC	1 cut(s)	1062
Bsp13I	TCCGGA	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	80, 274, 415
BspACI	CCGC	4 cut(s)	722, 832, 912, 1052
BspCNI	CTCAG	2 cut(s)	277, 679
BspEI	TCCGGA	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	259, 276
BspPI	GGATC	3 cut(s)	269, 282, 410
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	4 cut(s)	160, 448, 600, 988
BssECI	CCNNGG	2 cut(s)	489, 582
BssMI	GATC	3 cut(s)	80, 274, 415
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	2 cut(s)	310, 649
Bst6I	CTCTTC	2 cut(s)	412, 927
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	42, 542
BstDEI	CTNAG	2 cut(s)	285, 687
BstEII	GGTNACC	1 cut(s)	779
BstFNI	CGCG	1 cut(s)	832
BstHHI	GCGC	1 cut(s)	832
BstKTI	GATC	3 cut(s)	83, 277, 418
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	3 cut(s)	80, 274, 415
BstNI	CCWGG	1 cut(s)	583
BstNSI	RCATGY	1 cut(s)	524
BstPI	GGTNACC	1 cut(s)	779
BstSCI	CCNGG	1 cut(s)	581
BstSFI	CTRYAG	1 cut(s)	774
BstSLI	GKGCMC	1 cut(s)	1062
BstUI	CGCG	1 cut(s)	832
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuI	GTATCC	1 cut(s)	828
BtsIMutI	CAGTG	2 cut(s)	145, 393
Cac8I	GCNNGC	2 cut(s)	42, 542
CaiI	CAGNNNCTG	1 cut(s)	818
CfoI	GCGC	1 cut(s)	832
Cfr13I	GGNCC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	311, 645
CviAII	CATG	5 cut(s)	119, 222, 254, 521, 975
CviQI	GTAC	2 cut(s)	311, 645
DdeI	CTNAG	2 cut(s)	285, 687
DpnI	GATC	3 cut(s)	82, 276, 417
DpnII	GATC	3 cut(s)	80, 274, 415
DraI	TTTAAA	1 cut(s)	628
DraIII	CACNNNGTG	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	412, 927
EarI	CTCTTC	2 cut(s)	412, 927
Eco130I	CCWWGG	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	779
EcoO109I	RGGNCCY	1 cut(s)	258
EcoO65I	GGTNACC	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	581
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	5 cut(s)	122, 225, 257, 524, 978
FaqI	GGGAC	1 cut(s)	940
FatI	CATG	5 cut(s)	118, 221, 253, 520, 974
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	4 cut(s)	57, 281, 555, 680
GlaI	GCGC	1 cut(s)	831
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	2 cut(s)	308, 840
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	1 cut(s)	832
Hin1II	CATG	5 cut(s)	122, 225, 257, 524, 978
Hin6I	GCGC	1 cut(s)	830
HinP1I	GCGC	1 cut(s)	830
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	845
HinfI	GANTC	7 cut(s)	5, 11, 88, 287, 431, 578, 635
HpaI	GTTAAC	1 cut(s)	610
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	4 cut(s)	389, 583, 775, 791
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	5 cut(s)	10, 165, 339, 445, 460
Hpy188III	TCNNGA	6 cut(s)	15, 92, 304, 325, 372, 419
Hpy8I	GTNNAC	1 cut(s)	610
HpyAV	CCTTC	4 cut(s)	89, 530, 568, 754
HpyCH4III	ACNGT	2 cut(s)	310, 649
HpyCH4V	TGCA	5 cut(s)	40, 47, 122, 791, 949
HpyF3I	CTNAG	2 cut(s)	285, 687
Hsp92II	CATG	5 cut(s)	122, 225, 257, 524, 978
HspAI	GCGC	1 cut(s)	830
Kpn2I	TCCGGA	1 cut(s)	418
KspAI	GTTAAC	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	80, 274, 415
LmnI	GCTCC	2 cut(s)	26, 802
Lsp1109I	GCAGC	1 cut(s)	31
MaeI	CTAG	4 cut(s)	57, 281, 555, 680
MaeIII	GTNAC	4 cut(s)	59, 654, 779, 1026
MalI	GATC	3 cut(s)	82, 276, 417
MboI	GATC	3 cut(s)	80, 274, 415
MboII	GAAGA	8 cut(s)	90, 155, 200, 399, 611, 644, 944, 964
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	1062
MluCI	AATT	9 cut(s)	134, 341, 382, 423, 484, 786, 861, 896, 956
MlyI	GAGTC	4 cut(s)	5, 97, 296, 587
MmeI	TCCRAC	1 cut(s)	48
MroI	TCCGGA	1 cut(s)	418
MroXI	GAANNNNTTC	2 cut(s)	147, 478
MseI	TTAA	2 cut(s)	609, 627
MslI	CAYNNNNRTG	1 cut(s)	123
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	583
MvnI	CGCG	1 cut(s)	832
NdeII	GATC	3 cut(s)	80, 274, 415
NlaIII	CATG	5 cut(s)	122, 225, 257, 524, 978
NlaIV	GGNNCC	2 cut(s)	259, 276
NmuCI	GTSAC	1 cut(s)	779
NspI	RCATGY	1 cut(s)	524
PdmI	GAANNNNTTC	2 cut(s)	147, 478
PfeI	GAWTC	3 cut(s)	5, 431, 635
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	4 cut(s)	5, 96, 295, 586
PpsI	GAGTC	4 cut(s)	5, 96, 295, 586
PpuMI	RGGWCCY	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	581
PspEI	GGTNACC	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	259, 276
PspPI	GGNCC	1 cut(s)	258
PspPPI	RGGWCCY	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	818
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	312, 646
RsaNI	GTAC	2 cut(s)	311, 645
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	609, 627
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	3 cut(s)	80, 274, 415
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	4 cut(s)	5, 97, 296, 587
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	1 cut(s)	1062
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	2 cut(s)	13, 1044
SmoI	CTYRAG	2 cut(s)	13, 1044
Sse9I	AATT	9 cut(s)	134, 341, 382, 423, 484, 786, 861, 896, 956
SsiI	CCGC	4 cut(s)	722, 832, 912, 1052
SspMI	CTAG	4 cut(s)	57, 281, 555, 680
StyD4I	CCNGG	1 cut(s)	581
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	310, 649
TasI	AATT	9 cut(s)	134, 341, 382, 423, 484, 786, 861, 896, 956
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	5, 431, 635
Tru1I	TTAA	2 cut(s)	609, 627
Tru9I	TTAA	2 cut(s)	609, 627
TscAI	CASTG	2 cut(s)	145, 393
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	145, 393
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	2 cut(s)	341, 484
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	147, 478
XspI	CTAG	4 cut(s)	57, 281, 555, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.