Rorug05G0433000

WPP domain-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007861
Physical Location & Seq
Forward (+)
60203242 .. 60209027
5786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0433000.1

Sequence Viewer

Length: 2889 bp
ATGGATTTGCAGAGCGGAGTCCCATTGCTGTTTCAGCAATTCAAGGCTCTGTTCCGGAAGAACCTGCTGCTGGCATGGCGGAAGAAGGCGGCGACGTTCCTCCAGCTCTTCTCGTCCTTGTTCTTCGTCTTCCTCCTCTTCTGTATCCAGAAGGCCATGATGGCTCGATTCGCCTCCTCCACCACTTACAAGAGCGTAACCGATCCCCAGCCTCTGGTTGCGCCGCCGATCCCGCCGTGCGAGGACAAGTACTACATCCACAAGCCCTGCTTTGACTTTGTGTGGAGCGGAAATGACAGCCCTAGGATTCGGAGCATTGCCACTGCTATCATGGCTAACAATCCCGGCCGGCCGATTCCGTCGATAAAGGTCAAATCATTTAAAACAAAAGCTGATGTAGATGTATGGCTATTTAGTAATCCTATGTACTGCCCCGGAGCTTTGCATTTTGTGGAAAGAAATGCTAGTGTTATTAGTTATGGCATACAGACCAACTCTACTACTCTTGCAAAACAAGGGCAATTTGAGGATCCCACATTCAAATTTCAAATTCCCCTTCAGATTGCTGCAGAGCGTGAAATTGCTAGGTCTTTAATTGGAGTTCCAAACTTCAGCTGGGTTGTTGCGCTAAAAGAATTTGCACACCCTTCAAGGGAGATTCCCTCTGCATTGCAGACAGTAGGGCCGACCTTCTTTCTTGCAACTTCCATGTTTGGTTTTGTGTTTCAAATGAGTTCTTTGATCACAGAAAAAGAACTAAAGCTTCGACAGGCAATGACAATTATGGGTCTTTATGACTCTGCATACTGGTTCTCATGGCTCACATGGGAGGGAATTATCACACTTCTCTCATCACTTTTCATCACTCTGTTTGGAATCATATTTCAGTTTGATATGTTCCTGAAAAACAATTTTGCGGTCATCTTCCTCATTTTCTTTCTTTTTCAACTCAATATGATTGGTTTTGCCTTTATGTTATCGGCATTCATAAGCAAGTCATCTTCATCAACAACTGTGGGTTTCTCCATATATATTGTTGGATCTGTCACCCAGATTGTCACAGCCGCTGGATTTCCCTACAGCCAAAACATCCGCAAAAGGTATAGAATAATGTGGTCATTATTCCCGCCAAATCTTCTTGCCAAAGCTCTAGAGATACTCTCTGGTGCAACATCTCCCCCTTATGATATGGGCATAAAATGGAGTGGAATAACAAAGTGTCCACCAAATGAAACGGACTGCGTTATAACAATTAGTGACATTTTTAAATGGCTGGCGGCAACATTCTTTCTCTGGTTTGTATTGGCTATCTACTTCGATAATATCATCCCAAATGTATCTGGTGTCAGAAAATCAGTTTTTTACTTTTTAAATCCTGGGTACTGGCTAGGGAAGGGTGGAAAAGTGGAAGAGGGTGGCATTTGCAGTTGCATAGGTTCAGTTCCAGAACAGGAGCCACTTACTCCGGATGATGAAGATGTACTTGAAGAAGAGAACATTGTAAAACAACAAACTAGCGAGGGCATAGTTGATCCAAATATTGCAGTTCAGATACGTGGCCTCTCAAAATCATATCCAGGGACCACAAATATTGGTTGCTGTAGATGCAAGAGCACGTCACCTTACCATGCTCTGAAGGGTCTATGGGTGAATTTTTCCAAGAATCAGCTATTTTGTTTACTTGGGCCAAATGGAGCTGGGAAGACCACCACAATCAATTGTTTGACTGGCATCACACCTGTTACTGGCGGAGATGCATTGATTTATAGGAACTCTGTTCGAAGCTCTGTTGGCATGGCTAAAATTCGGCAAATTATAGGAGTTTGTCCGCAGTTTGATATTCTTTGGGATGCATTGTCTGGGCAAGAGCACCTCCACCTGTTTGCTAGTATTAAAGGCCTATCCCCAGCTTCAATAAAAGTGGTTGCTCAGAAGTCATTGGTAGAAGTAAGACTCACCGAGGCAGCCAAAATTAGAGCTGGGAGTTACAGTGGAGGAATGAAACGTCGCTTAAGTGTGGCAATAGCCCTTATTGGTGATCCAAAGTTAGTCATCTTAGATGAACCGACAACTGGTATGGATCCAATAACTAGAAGACATGTGTGGGACATCATTGAGGATGCAAAAAAGGGGCGTGCAATTGTCCTAACCACTCACTCAATGGAAGAAGCTGACATTTTAAGTGATAGGATAGGAATAATGGCAAAGGGTAGGCTCCGTTGCATTGGTACTTCAATCAGGCTGAAATCACGGTTTGGTACTGGCTTTATTGCTACTGTTAGTTTCAGTGAAAGCACCAATGGACAAAGCCCTCCACATGGGGATGCACTTACTACACCTCACCATGAGGCAGTGAAGCAGTTCTTTAAATATCATTTGGATGTTTTACCGAAAGAAGAGAACAAAGCCTTTCTGACTTTTGTTATTCCTCATGACAGAGAGGCACTTCTGACGAAATTTTTTAAGGAGCTTCAAGATAGAGAAATTGAGTTTGGTATCTCAGACATCCAACTGGGTCTTACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAGGCAGGCAGAGCTAGAAACTGCTACGGCTGAGGGGAGGTTGGTCACTCTCACATTAACATCCGGAGCCTTAATCGAGATACCTGTAGGAGCTAGGTTTATTGGGATTCCCGGTACAGAATCCACAGAAAATCCAAGAGGAGTTATGGTAGAAGTTTACTGGGTGCAAGATGATTCCGGTTCCCTCTGCATTTCAGGCCACTCACCTGAAACTCCAATACCTCCAAATGTTGAACCAATGCCTTCCTTGGCACCTACTTCACGCCGCAATCTGTTACCAGTTCATGGAGTTGTAATCCACCCTGATCAAATCAGTAATACCACCACCTCTCATTGA

Protein Analysis

962

Amino Acids

106.62

Weight (kDa)

8.51

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_3 PF12698 221 - 438 5.3e-17 ABC-2 family transporter protein
ABC_tran PF00005 546 - 691 1.7e-23 ABC transporter
AAA_21 PF13304 646 - 723 2.1e-09 AAA domain, putative AbiEii toxin, Type IV TA system
ABCA11_C PF25158 846 - 900 1.6e-30 ABC transporter A family member 11-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1247
Acc36I ACCTGC 1 cut(s) 72
AccB1I GGYRCC 1 cut(s) 2803
AccB7I CCANNNNNTGG 2 cut(s) 214, 2837
AccBSI CCGCTC 2 cut(s) 15, 288
AccIII TCCGGA 3 cut(s) 54, 1465, 2615
AclWI GGATC 9 cut(s) 197, 223, 524, 537, 1048, 1526, 2033, 2075, 2088
AcoI YGGCCR 2 cut(s) 346, 350
AcsI RAATTY 6 cut(s) 542, 549, 635, 1651, 1803, 2456
AcuI CTGAAG 3 cut(s) 542, 595, 1655
AfaI GTAC 7 cut(s) 251, 428, 1382, 1482, 2230, 2260, 2668
AfiI CCNNNNNNNGG 7 cut(s) 70, 214, 652, 1745, 2072, 2318, 2837
AflII CTTAAG 1 cut(s) 2011
AflIII ACRYGT 1 cut(s) 2098
AjiI CACGTC 1 cut(s) 1617
AjnI CCWGG 2 cut(s) 1375, 1576
AjuI GAANNNNNNNTTGG 2 cut(s) 2475, 2507
Alw21I GWGCWC 2 cut(s) 1616, 1872
AlwI GGATC 9 cut(s) 197, 223, 524, 537, 1048, 1526, 2033, 2075, 2088
AlwNI CAGNNNCTG 2 cut(s) 214, 1067
Aor13HI TCCGGA 3 cut(s) 54, 1465, 2615
AoxI GGCC 8 cut(s) 153, 346, 350, 683, 1558, 1685, 1897, 2749
ApeKI GCWGC 3 cut(s) 67, 566, 1964
ApoI RAATTY 6 cut(s) 542, 549, 635, 1651, 1803, 2456
Asp700I GAANNNNTTC 1 cut(s) 2360
AspA2I CCTAGG 1 cut(s) 302
AspLEI GCGC 2 cut(s) 223, 628
AspS9I GGNCC 3 cut(s) 683, 1581, 1685
AsuC2I CCSGG 3 cut(s) 345, 435, 2664
AsuHPI GGTGA 7 cut(s) 1039, 1611, 1660, 1948, 2048, 2333, 2748
AsuII TTCGAA 1 cut(s) 1780
AvaII GGWCC 1 cut(s) 1581
AvrII CCTAGG 1 cut(s) 302
BamHI GGATCC 2 cut(s) 529, 2080
BanI GGYRCC 1 cut(s) 2803
BbsI GAAGAC 3 cut(s) 121, 1709, 2101
Bbv12I GWGCWC 2 cut(s) 1616, 1872
BbvCI CCTCAGC 1 cut(s) 2583
BbvI GCAGC 3 cut(s) 54, 553, 1976
BccI CCATC 1 cut(s) 154
BceAI ACGGC 2 cut(s) 220, 2595
BciT130I CCWGG 2 cut(s) 1377, 1578
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 2 cut(s) 741, 2857
BcnI CCSGG 3 cut(s) 345, 435, 2664
BfmI CTRYAG 4 cut(s) 567, 1078, 1600, 2637
BfrI CTTAAG 1 cut(s) 2011
BfuAI ACCTGC 1 cut(s) 72
BfuI GTATCC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 8 cut(s) 68, 90, 224, 567, 1065, 1278, 1965, 2818
BlnI CCTAGG 1 cut(s) 302
BlsI GCNGC 8 cut(s) 69, 91, 225, 568, 1066, 1279, 1966, 2819
BmcAI AGTACT 1 cut(s) 251
Bme1390I CCNGG 5 cut(s) 345, 435, 1377, 1578, 2664
Bme18I GGWCC 1 cut(s) 1581
BmgBI CACGTC 1 cut(s) 1617
BmgT120I GGNCC 3 cut(s) 683, 1581, 1685
BmiI GGNNCC 8 cut(s) 531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
BmrFI CCNGG 5 cut(s) 345, 435, 1377, 1578, 2664
BmrI ACTGGG 2 cut(s) 2522, 2722
BmsI GCATC 6 cut(s) 1595, 1740, 1744, 1840, 2110, 2314
BmuI ACTGGG 2 cut(s) 2522, 2722
BpiI GAAGAC 3 cut(s) 121, 1709, 2101
BplI GAGNNNNNCTC 4 cut(s) 647, 679, 1145, 1177
BpmI CTGGAG 1 cut(s) 86
Bpu10I CCTNAGC 1 cut(s) 2583
Bpu14I TTCGAA 1 cut(s) 1780
BpuMI CCSGG 3 cut(s) 345, 435, 2664
BsaAI YACGTR 1 cut(s) 1556
BsaJI CCNNGG 6 cut(s) 302, 433, 1376, 1577, 1959, 2799
BsaWI WCCGGW 4 cut(s) 54, 1465, 2615, 2729
BsaXI ACNNNNNCTCC 4 cut(s) 1975, 2005, 2685, 2715
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 214, 652, 1745, 2072, 2318, 2837
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 9 cut(s) 812, 1388, 1732, 1750, 2077, 2266, 2517, 2717, 2831
Bse3DI GCAATG 4 cut(s) 23, 315, 668, 780
BseAI TCCGGA 3 cut(s) 54, 1465, 2615
BseBI CCWGG 2 cut(s) 1377, 1578
BseDI CCNNGG 6 cut(s) 302, 433, 1376, 1577, 1959, 2799
BseLI CCNNNNNNNGG 7 cut(s) 70, 214, 652, 1745, 2072, 2318, 2837
BseMI GCAATG 4 cut(s) 23, 315, 668, 780
BseMII CTCAG 3 cut(s) 1943, 2514, 2574
BseNI ACTGG 9 cut(s) 812, 1388, 1732, 1750, 2077, 2266, 2517, 2717, 2831
BseRI GAGGAG 3 cut(s) 125, 166, 2706
BseX3I CGGCCG 2 cut(s) 346, 350
BseXI GCAGC 3 cut(s) 54, 553, 1976
BseYI CCCAGC 5 cut(s) 207, 615, 1697, 1906, 1979
Bsh1285I CGRYCG 2 cut(s) 349, 353
BshFI GGCC 8 cut(s) 155, 348, 352, 685, 1560, 1687, 1899, 2751
BshNI GGYRCC 1 cut(s) 2803
BsiEI CGRYCG 2 cut(s) 349, 353
BsiHKAI GWGCWC 2 cut(s) 1616, 1872
BsiSI CCGG 8 cut(s) 55, 345, 349, 435, 1466, 2616, 2664, 2730
BslFI GGGAC 3 cut(s) 5, 1594, 2120
BslI CCNNNNNNNGG 7 cut(s) 70, 214, 652, 1745, 2072, 2318, 2837
BsmFI GGGAC 3 cut(s) 5, 1594, 2120
BsmI GAATGC 1 cut(s) 983
BsnI GGCC 8 cut(s) 155, 348, 352, 685, 1560, 1687, 1899, 2751
Bsp119I TTCGAA 1 cut(s) 1780
Bsp1286I GDGCHC 2 cut(s) 1616, 1872
Bsp13I TCCGGA 3 cut(s) 54, 1465, 2615
Bsp143I GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
BspANI GGCC 8 cut(s) 155, 348, 352, 685, 1560, 1687, 1899, 2751
BspCNI CTCAG 3 cut(s) 1942, 2513, 2575
BspEI TCCGGA 3 cut(s) 54, 1465, 2615
BspHI TCATGA 1 cut(s) 2431
BspLI GGNNCC 8 cut(s) 531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 72
BspPI GGATC 9 cut(s) 197, 223, 524, 537, 1048, 1526, 2033, 2075, 2088
BspQI GCTCTTC 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 1780
BspT107I GGYRCC 1 cut(s) 2803
BspTI CTTAAG 1 cut(s) 2011
BsrBI CCGCTC 2 cut(s) 15, 288
BsrDI GCAATG 4 cut(s) 23, 315, 668, 780
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 9 cut(s) 812, 1388, 1732, 1750, 2077, 2266, 2517, 2717, 2831
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 6 cut(s) 302, 433, 1376, 1577, 1959, 2799
BssMI GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
BssT1I CCWWGG 2 cut(s) 302, 2799
Bst2UI CCWGG 2 cut(s) 1377, 1578
Bst4CI ACNGT 5 cut(s) 679, 1015, 1991, 2253, 2278
Bst6I CTCTTC 5 cut(s) 113, 143, 1404, 1485, 2391
BstAFI CTTAAG 1 cut(s) 2011
BstBAI YACGTR 1 cut(s) 1556
BstBI TTCGAA 1 cut(s) 1780
BstC8I GCNNGC 5 cut(s) 72, 350, 1275, 2136, 2559
BstDEI CTNAG 4 cut(s) 1929, 2056, 2500, 2583
BstHHI GCGC 2 cut(s) 223, 628
BstKTI GATC 9 cut(s) 205, 231, 532, 744, 1043, 1534, 2041, 2083, 2860
BstMBI GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
BstMCI CGRYCG 2 cut(s) 349, 353
BstNI CCWGG 2 cut(s) 1377, 1578
BstNSI RCATGY 1 cut(s) 2102
BstSCI CCNGG 5 cut(s) 343, 433, 1375, 1576, 2662
BstSFI CTRYAG 4 cut(s) 567, 1078, 1600, 2637
BstV1I GCAGC 3 cut(s) 54, 553, 1976
BstV2I GAAGAC 3 cut(s) 121, 1709, 2101
BstX2I RGATCY 3 cut(s) 529, 1040, 2080
BstYI RGATCY 3 cut(s) 529, 1040, 2080
BstZI CGGCCG 2 cut(s) 346, 350
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 8 cut(s) 155, 348, 352, 685, 1560, 1687, 1899, 2751
BtrI CACGTC 1 cut(s) 1617
BtsI GCAGTG 2 cut(s) 321, 2358
BtsIMutI CAGTG 4 cut(s) 321, 1996, 2293, 2358
BveI ACCTGC 1 cut(s) 72
Cac8I GCNNGC 5 cut(s) 72, 350, 1275, 2136, 2559
CaiI CAGNNNCTG 2 cut(s) 214, 1067
CciI TCATGA 1 cut(s) 2431
CfoI GCGC 2 cut(s) 223, 628
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 3 cut(s) 683, 1581, 1685
Csp6I GTAC 7 cut(s) 250, 427, 1381, 1481, 2229, 2259, 2667
CspCI CAANNNNNGTGG 6 cut(s) 996, 1031, 1573, 1608, 1902, 1937
CviQI GTAC 7 cut(s) 250, 427, 1381, 1481, 2229, 2259, 2667
DdeI CTNAG 4 cut(s) 1929, 2056, 2500, 2583
DpnI GATC 9 cut(s) 204, 230, 531, 743, 1042, 1533, 2040, 2082, 2859
DpnII GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
DraI TTTAAA 4 cut(s) 382, 1267, 1371, 2368
EaeI YGGCCR 2 cut(s) 346, 350
EagI CGGCCG 2 cut(s) 346, 350
Eam1104I CTCTTC 5 cut(s) 113, 143, 1404, 1485, 2391
EarI CTCTTC 5 cut(s) 113, 143, 1404, 1485, 2391
EciI GGCGGA 2 cut(s) 94, 1764
EclXI CGGCCG 2 cut(s) 346, 350
Eco130I CCWWGG 2 cut(s) 302, 2799
Eco147I AGGCCT 1 cut(s) 1899
Eco47I GGWCC 1 cut(s) 1581
Eco52I CGGCCG 2 cut(s) 346, 350
Eco57I CTGAAG 3 cut(s) 542, 595, 1655
EcoRII CCWGG 2 cut(s) 1375, 1576
EcoT14I CCWWGG 2 cut(s) 302, 2799
EcoT22I ATGCAT 2 cut(s) 1759, 1855
ErhI CCWWGG 2 cut(s) 302, 2799
FalI AAGNNNNNCTT 6 cut(s) 254, 286, 1467, 1499, 2348, 2380
FaqI GGGAC 3 cut(s) 5, 1594, 2120
FauI CCCGC 2 cut(s) 240, 1134
FbaI TGATCA 2 cut(s) 741, 2857
Fnu4HI GCNGC 8 cut(s) 68, 90, 224, 567, 1065, 1278, 1965, 2818
FseI GGCCGGCC 1 cut(s) 352
Fsp4HI GCNGC 8 cut(s) 68, 90, 224, 567, 1065, 1278, 1965, 2818
GlaI GCGC 2 cut(s) 222, 627
GluI GCNGC 8 cut(s) 68, 90, 224, 567, 1065, 1278, 1965, 2818
GsaI CCCAGC 5 cut(s) 211, 619, 1701, 1910, 1983
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 8 cut(s) 155, 348, 352, 685, 1560, 1687, 1899, 2751
HapII CCGG 8 cut(s) 55, 345, 349, 435, 1466, 2616, 2664, 2730
HhaI GCGC 2 cut(s) 223, 628
Hin6I GCGC 2 cut(s) 221, 626
HinP1I GCGC 2 cut(s) 221, 626
HindIII AAGCTT 1 cut(s) 761
HpaII CCGG 8 cut(s) 55, 345, 349, 435, 1466, 2616, 2664, 2730
HphI GGTGA 7 cut(s) 1039, 1611, 1660, 1948, 2048, 2333, 2748
Hpy166II GTNNAC 3 cut(s) 1223, 1679, 2710
Hpy188I TCNGA 9 cut(s) 312, 561, 1349, 1551, 1635, 1932, 2415, 2451, 2503
Hpy8I GTNNAC 3 cut(s) 1223, 1679, 2710
Hpy99I CGWCG 3 cut(s) 97, 364, 2010
HpyAV CCTTC 8 cut(s) 79, 145, 566, 657, 700, 1387, 1630, 2805
HpyCH4III ACNGT 5 cut(s) 679, 1015, 1991, 2253, 2278
HpyCH4IV ACGT 4 cut(s) 95, 1555, 1616, 2005
HpyF3I CTNAG 4 cut(s) 1929, 2056, 2500, 2583
HpySE526I ACGT 4 cut(s) 95, 1555, 1616, 2005
HspAI GCGC 2 cut(s) 221, 626
Kpn2I TCCGGA 3 cut(s) 54, 1465, 2615
KroI GCCGGC 1 cut(s) 348
KroNI GCCGGC 1 cut(s) 350
Ksp22I TGATCA 2 cut(s) 741, 2857
Kzo9I GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 9 cut(s) 285, 312, 437, 1453, 1694, 2220, 2467, 2618, 2642
Lsp1109I GCAGC 3 cut(s) 54, 553, 1976
LweI GCATC 6 cut(s) 1595, 1740, 1744, 1840, 2110, 2314
MaeII ACGT 4 cut(s) 95, 1555, 1616, 2005
MaeIII GTNAC 9 cut(s) 196, 1045, 1057, 1256, 1617, 1741, 1985, 2596, 2826
MalI GATC 9 cut(s) 204, 230, 531, 743, 1042, 1533, 2040, 2082, 2859
MbiI CCGCTC 2 cut(s) 15, 288
MboI GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
MfeI CAATTG 2 cut(s) 1717, 2139
MflI RGATCY 3 cut(s) 529, 1040, 2080
MhlI GDGCHC 2 cut(s) 1616, 1872
MlyI GAGTC 3 cut(s) 27, 791, 1947
MmeI TCCRAC 2 cut(s) 1018, 2533
Mph1103I ATGCAT 2 cut(s) 1759, 1855
MroI TCCGGA 3 cut(s) 54, 1465, 2615
MroNI GCCGGC 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 2360
MslI CAYNNNNRTG 2 cut(s) 2322, 2379
MspA1I CMGCKG 2 cut(s) 615, 1067
MspCI CTTAAG 1 cut(s) 2011
MspI CCGG 8 cut(s) 55, 345, 349, 435, 1466, 2616, 2664, 2730
MspR9I CCNGG 5 cut(s) 345, 435, 1377, 1578, 2664
MunI CAATTG 2 cut(s) 1717, 2139
Mva1269I GAATGC 1 cut(s) 983
MvaI CCWGG 2 cut(s) 1377, 1578
NaeI GCCGGC 1 cut(s) 350
NciI CCSGG 3 cut(s) 345, 435, 2664
NdeII GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
NgoMIV GCCGGC 1 cut(s) 348
NlaIV GGNNCC 8 cut(s) 531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
NmuCI GTSAC 5 cut(s) 1045, 1057, 1256, 1617, 2596
NsiI ATGCAT 2 cut(s) 1759, 1855
NspI RCATGY 1 cut(s) 2102
NspV TTCGAA 1 cut(s) 1780
PagI TCATGA 1 cut(s) 2431
PceI AGGCCT 1 cut(s) 1899
PciI ACATGT 1 cut(s) 2098
PciSI GCTCTTC 1 cut(s) 113
PctI GAATGC 1 cut(s) 983
PdiI GCCGGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 2360
PfeI GAWTC 9 cut(s) 168, 307, 355, 658, 876, 1663, 2659, 2672, 2726
PflMI CCANNNNNTGG 2 cut(s) 214, 2837
PkrI GCNGC 8 cut(s) 69, 91, 225, 568, 1066, 1279, 1966, 2819
PleI GAGTC 3 cut(s) 26, 791, 1947
PpsI GAGTC 3 cut(s) 26, 791, 1947
Ppu21I YACGTR 1 cut(s) 1556
PscI ACATGT 1 cut(s) 2098
PsiI TTATAA 1 cut(s) 1247
Psp6I CCWGG 2 cut(s) 1375, 1576
PspFI CCCAGC 5 cut(s) 207, 615, 1697, 1906, 1979
PspGI CCWGG 2 cut(s) 1375, 1576
PspN4I GGNNCC 8 cut(s) 531, 1455, 1582, 2082, 2216, 2620, 2734, 2805
PspPI GGNCC 3 cut(s) 683, 1581, 1685
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 2 cut(s) 214, 1067
PsuI RGATCY 3 cut(s) 529, 1040, 2080
PvuII CAGCTG 1 cut(s) 615
RigI GGCCGGCC 1 cut(s) 352
RsaI GTAC 7 cut(s) 251, 428, 1382, 1482, 2230, 2260, 2668
RsaNI GTAC 7 cut(s) 250, 427, 1381, 1481, 2229, 2259, 2667
RseI CAYNNNNRTG 2 cut(s) 2322, 2379
SapI GCTCTTC 1 cut(s) 113
SatI GCNGC 8 cut(s) 68, 90, 224, 567, 1065, 1278, 1965, 2818
Sau3AI GATC 9 cut(s) 202, 228, 529, 741, 1040, 1531, 2038, 2080, 2857
Sau96I GGNCC 3 cut(s) 683, 1581, 1685
ScaI AGTACT 1 cut(s) 251
SchI GAGTC 3 cut(s) 27, 791, 1947
ScrFI CCNGG 5 cut(s) 345, 435, 1377, 1578, 2664
SduI GDGCHC 2 cut(s) 1616, 1872
SfaNI GCATC 6 cut(s) 1595, 1740, 1744, 1840, 2110, 2314
SfcI CTRYAG 4 cut(s) 567, 1078, 1600, 2637
SfuI TTCGAA 1 cut(s) 1780
SinI GGWCC 1 cut(s) 1581
SmiMI CAYNNNNRTG 2 cut(s) 2322, 2379
SmlI CTYRAG 1 cut(s) 2011
SmoI CTYRAG 1 cut(s) 2011
SseBI AGGCCT 1 cut(s) 1899
SspI AATATT 3 cut(s) 1540, 1591, 2548
StuI AGGCCT 1 cut(s) 1899
StyD4I CCNGG 5 cut(s) 343, 433, 1375, 1576, 2662
StyI CCWWGG 2 cut(s) 302, 2799
TaaI ACNGT 5 cut(s) 679, 1015, 1991, 2253, 2278
TaiI ACGT 4 cut(s) 98, 1558, 1619, 2008
TaqI TCGA 6 cut(s) 166, 362, 766, 1317, 1780, 2628
TatI WGTACW 3 cut(s) 249, 426, 1480
TauI GCSGC 5 cut(s) 92, 226, 1067, 1280, 2820
TfiI GAWTC 9 cut(s) 168, 307, 355, 658, 876, 1663, 2659, 2672, 2726
TscAI CASTG 4 cut(s) 328, 1996, 2293, 2358
TseFI GTSAC 5 cut(s) 1045, 1057, 1256, 1617, 2596
TseI GCWGC 3 cut(s) 67, 566, 1964
Tsp45I GTSAC 5 cut(s) 1045, 1057, 1256, 1617, 2596
TspDTI ATGAA 8 cut(s) 850, 976, 993, 1245, 1488, 2015, 2076, 2825
TspGWI ACGGA 3 cut(s) 348, 1250, 2207
TspRI CASTG 4 cut(s) 328, 1996, 2293, 2358
Van91I CCANNNNNTGG 2 cut(s) 214, 2837
Vha464I CTTAAG 1 cut(s) 2011
VpaK11BI GGWCC 1 cut(s) 1581
XapI RAATTY 6 cut(s) 542, 549, 635, 1651, 1803, 2456
XbaI TCTAGA 1 cut(s) 1150
XceI RCATGY 1 cut(s) 2102
XcmI CCANNNNNNNNNTGG 3 cut(s) 328, 612, 2158
XmaJI CCTAGG 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 2360
ZrmI AGTACT 1 cut(s) 251
Zsp2I ATGCAT 2 cut(s) 1759, 1855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.