Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007861

Physical Location & Seq

Genomic Coordinates Forward (+)

60209312 .. 60209629

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0433100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCTTCCGGAGCTCCCAAACGTAATTACATGCTTTCATATACTCCCAAGGCTACCAGGCAAGTCCCTGATGCGCTTCAGGTGCGTATGCAAATCTTGCTGTGCTCTCACCCGTAACCCTTCATTTATCGAAACTCACCGAAACTTCAATAGCAACAAGCACAGTAATCTCCTTCTCACCACTTGGGACCGAACCACAAAGCAACAACATTTCTTCTCAGTACAAATCCACCAAGAAGGAAGTCCACTACCAAGCACCAACCACCTTCTGAAACTTCCCACACCACTGACCAAGTATTCTTGTGTCTACAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006996 GO:0006997 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046982 GO:0046983 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04260 ko04261 ko05410 ko05414 map04260 map04261 map05410 map05414

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.11

Weight (kDa)

9.58

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26455 AT5G56210
fragaria_vesca	FvH4_3g41590 FvH4_3g41590
malus_domestica	MD03G1043100.v1.1 MD11G1046100.v1.1
prunus_persica	Prupe.6G035500_v2.0.a1 Prupe.6G035500_v2.0.a1
pyrus_communis	pycom03g03330 pycom11g03740
rosa_chinensis	RchiOBHm_Chr5g0074601
rosa_laevigata	RLG00000036490
rosa_multiflora	Rmu_sc0001104.1_g000010 Rmu_sc0025049.1_g000003
rosa_roxburghii	Rroxscaffold_1G00006970 Rroxscaffold_2G00102040 Rroxscaffold_3G00254370
rosa_rugosa	Rorug05G0433000 Rorug05G0433100 Rorug05G0433200
rosa_samantha	Rh5AG490300 Rh5BG511200 Rh5CG534900 Rh5DG523400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	61
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw21I	GWGCWC	2 cut(s)	15, 106
Aor13HI	TCCGGA	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	3 cut(s)	100, 128, 169
AvaII	GGWCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	15, 106
BciT130I	CCWGG	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	7
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	15, 106
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	49, 200
BsmFI	GGGAC	2 cut(s)	49, 200
Bsp1286I	GDGCHC	2 cut(s)	15, 106
Bsp13I	TCCGGA	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	230
BspEI	TCCGGA	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 81, 96
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	284
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	30
CviJI	RGCY	2 cut(s)	13, 52
CviKI_1	RGCY	2 cut(s)	13, 52
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	33
FaiI	YATR	5 cut(s)	31, 39, 41, 88, 316
FaqI	GGGAC	2 cut(s)	49, 200
FatI	CATG	1 cut(s)	29
FblI	GTMKAC	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	15
GlaI	GCGC	1 cut(s)	74
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	33
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	100, 128, 169
Hpy166II	GTNNAC	2 cut(s)	245, 307
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	2 cut(s)	245, 307
HpyAV	CCTTC	4 cut(s)	129, 182, 230, 275
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	2 cut(s)	90, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 81, 96
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	33
HspAI	GCGC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	10, 18
LpnPI	CCDG	5 cut(s)	21, 42, 64, 69, 80
LweI	GCATC	1 cut(s)	60
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	113
MboII	GAAGA	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	15, 106
MluCI	AATT	1 cut(s)	24
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	7
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	10, 81, 96
NlaIII	CATG	1 cut(s)	33
NlaIV	GGNNCC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacI	GAGCTC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	15, 106
SetI	ASST	4 cut(s)	15, 24, 83, 267
SfaNI	GCATC	1 cut(s)	60
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	24
TatI	WGTACW	1 cut(s)	220
TscAI	CASTG	1 cut(s)	291
TspDTI	ATGAA	2 cut(s)	26, 111
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	187
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.