RLG00000036490

WPP domain-interacting protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
81226272 .. 81228889
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036490

Sequence Viewer

Length: 1809 bp
ATGGATTTGGGGGGTGAATCTGTGGATGATAATCATGTAAACCCAGAACCTGTGTCCCATGGTGTTGTTGATGCTGATGATGGGGATAGTGTTGAGGTTAGGAACAACGGGTCCTGTGCTAATGGGATTGGAAATGTCCCTGGGACTAGAGCTTCAGCGGTGGATTTGACTCTTTCGGCGGGGAAATCACCCGGTGGTGGTGGAGGGTCGAATCCTGGTTTGAAAGGGCAAGGCTTGAGGAGGTGGAAGCGAATTCCGAGACTTCTGGGTAATGATGGAGGTGGCAATTCAGTAGATGATTCTAGTAGGAAGAGGGGTATGTCTGGTCCTGAAATTCCGGTTAAGGCTAGGAATGCTCCGGTTGAGGTTGATCATAATAACAGTGAGGGCTCGGTTGGATCCGTGAATATGGTGAGAAATTCGGGAGGTGCTGATGGCTTTGGATTTGCTGGTGCTAGTCTGGATTCTAGATTTGGTGTTGGTCCTGTTTTTGCTGCTCGTGCAGATTCTGATAACAGTGAGGATCGGAGTAGTAAGTCTTCCACAGCTGCCAGTGCTCCAAAGGGCAGGTATGACGTGCCTGTACCAGTAAGCCAACCACGGAATAGGGTGAAGAATGCTAGCACAAAGAGCTGGAGTAATTCAGCTCAAAGTGCTCAACCGGGGAGGGGACGGAGTGAAAGCAGTAAGAAGCATAGAGGAGACAGGGTCAAAATCGAGAAGGAAAACTCTCATTCCAGCATGGAATCTGACTCAAGAAGCTCCAACTTTGTCTTTATGCAGGCTGCACCTCTGTCTAGTAACGGGAAGCAAAGTAGAAGATCAATGAGTCAGGAAGGAGAAAATAGTGATGAAGCTCATGCAAGTGAGCAACAATTCAGTGAAGAAGTTCAAACTGGTTATCGCAGAGAGAATGCTGTAGAAGTTGAAGATTTTTCACAAGATTTAGATGCCGACTTGTCATGGGAGGGTAAGCTACGCAAAAGCAAGAAGCATGGGTCCTTTGCGGATATGGATCCTCTAGCTGAGTCTATGTTCAACTTCCAGACTGTACAAGAAGCACTCCAGAAAGAGGTTCAGAAATTTGGGGAGATTGGGAAAGAACCTTTATCACGAGGTGATAATTCAGTGAAGCCTATTGACCCCTCTTCAAGTGATCCGGAAATTATTGAATCCAATCTATCTGACCAGTTGGGTTCTGAAAAGATTGGACGGACTTTTTCGAATTCCTTGGAAGCACAGATATTGAGTTTGAAACAGCATGTGAAACTTATGGAAGGCAAGCTGGATGAGACTAGGGCTAGGCTTCAGGTGAAGGAGTCCAGGGTTGCTGAACTGGAAGATATTGTTAACATTAGCAAGTCTTTTAAAGAAGAATCAGGTAGTACCGTAGAGTTACAGGAGGAACAATACAGAGAGCTAGAGGCTGAGGTTGAGAGCTTGTTCAGGCAAAAGATTGAAGCGGAGGTTGAGTATATTGTAATAAAAACTACAACACAGAAGGTGAAGTTTGCTACAGGTGACCAAATTGCACTCATTGAGGAGCAAGAAGCAGTGGCTGGAGAACAAGCACGGATACTGAACAAGCTTGGGGAAGCACAAATTAGGGCTTCAAAGCTAAAAGAACGAACAGAGGAATTGGGAAAGTATTGCGGAGATGTTTTAAGGACAGAAGAGGTCTTTACTATGCAGAAGAAATTATGTAAGGTTAGCTCATGTTTTTTTGTCCAGTTGCTTTTGTTGGCTTTAGCCGTCTGGTTTTTTTTGTTGCAATCATCTCCCCCTCAAGGGACGGTTGTACCCACCTGA

Protein Analysis

603

Amino Acids

65.35

Weight (kDa)

5.33

Isoelectric Point (pI)

51.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 558
AccIII TCCGGA 1 cut(s) 1159
AciI CCGC 5 cut(s) 158, 179, 1007, 1463, 1653
AclWI GGATC 6 cut(s) 393, 406, 531, 1010, 1023, 1151
AcsI RAATTY 5 cut(s) 252, 333, 418, 1082, 1225
AcuI CTGAAG 2 cut(s) 138, 1292
AdeI CACNNNGTG 2 cut(s) 194, 1118
AfaI GTAC 4 cut(s) 585, 1053, 1387, 1800
AfiI CCNNNNNNNGG 5 cut(s) 197, 668, 1072, 1787, 1788
AgsI TTSAA 9 cut(s) 223, 893, 929, 1039, 1152, 1172, 1255, 1460, 1614
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 3 cut(s) 139, 214, 1322
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
Alw21I GWGCWC 2 cut(s) 559, 658
Alw26I GTCTC 3 cut(s) 253, 696, 1286
AlwI GGATC 6 cut(s) 393, 406, 531, 1010, 1023, 1151
AlwNI CAGNNNCTG 3 cut(s) 50, 509, 1559
Aor13HI TCCGGA 1 cut(s) 1159
ApeKI GCWGC 3 cut(s) 494, 548, 785
ApoI RAATTY 5 cut(s) 252, 333, 418, 1082, 1225
Asp700I GAANNNNTTC 1 cut(s) 888
AspS9I GGNCC 4 cut(s) 111, 326, 482, 999
AsuC2I CCSGG 2 cut(s) 192, 663
AsuHPI GGTGA 8 cut(s) 26, 180, 424, 622, 1130, 1324, 1516, 1532
AsuII TTCGAA 1 cut(s) 1223
AsuNHI GCTAGC 1 cut(s) 620
AvaII GGWCC 4 cut(s) 111, 326, 482, 999
BaeI ACNNNNGTAYC 1 cut(s) 1782
BamHI GGATCC 2 cut(s) 398, 1015
BanII GRGCYC 1 cut(s) 392
BarI GAAGNNNNNNTAC 2 cut(s) 523, 555
BauI CACGAG 2 cut(s) 498, 1113
BbsI GAAGAC 1 cut(s) 531
Bbv12I GWGCWC 2 cut(s) 559, 658
BbvCI CCTCAGC 1 cut(s) 1428
BbvI GCAGC 3 cut(s) 481, 535, 772
BccI CCATC 3 cut(s) 74, 269, 428
BceAI ACGGC 1 cut(s) 1736
BciT130I CCWGG 3 cut(s) 141, 216, 1324
BciVI GTATCC 1 cut(s) 1569
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 2 cut(s) 192, 663
BcoDI GTCTC 3 cut(s) 253, 696, 1286
BfmI CTRYAG 2 cut(s) 918, 1515
BfuAI ACCTGC 1 cut(s) 558
BfuI GTATCC 1 cut(s) 1569
BisI GCNGC 3 cut(s) 495, 549, 786
BlsI GCNGC 3 cut(s) 496, 550, 787
Bme1390I CCNGG 5 cut(s) 141, 192, 216, 663, 1324
Bme18I GGWCC 4 cut(s) 111, 326, 482, 999
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 4 cut(s) 111, 326, 482, 999
BmiI GGNNCC 4 cut(s) 112, 400, 1000, 1017
BmrFI CCNGG 5 cut(s) 141, 192, 216, 663, 1324
BmsI GCATC 2 cut(s) 61, 940
BmtI GCTAGC 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 531
BpmI CTGGAG 3 cut(s) 655, 1049, 1581
Bpu10I CCTNAGC 1 cut(s) 1428
Bpu14I TTCGAA 1 cut(s) 1223
BpuEI CTTGAG 3 cut(s) 256, 739, 1770
BpuMI CCSGG 2 cut(s) 192, 663
BsaBI GATNNNNATC 2 cut(s) 30, 1014
BsaJI CCNNGG 7 cut(s) 58, 139, 140, 599, 662, 1230, 1323
BsaWI WCCGGW 3 cut(s) 337, 358, 1159
BsaXI ACNNNNNCTCC 4 cut(s) 693, 723, 1457, 1487
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 668, 1072, 1787, 1788
Bse1I ACTGG 6 cut(s) 552, 587, 901, 1189, 1341, 1729
Bse8I GATNNNNATC 2 cut(s) 30, 1014
BseAI TCCGGA 1 cut(s) 1159
BseBI CCWGG 3 cut(s) 141, 216, 1324
BseDI CCNNGG 7 cut(s) 58, 139, 140, 599, 662, 1230, 1323
BseGI GGATG 2 cut(s) 31, 1294
BseJI GATNNNNATC 2 cut(s) 30, 1014
BseLI CCNNNNNNNGG 5 cut(s) 197, 668, 1072, 1787, 1788
BseMII CTCAG 2 cut(s) 1017, 1419
BseNI ACTGG 6 cut(s) 552, 587, 901, 1189, 1341, 1729
BseRI GAGGAG 3 cut(s) 253, 714, 1556
BseXI GCAGC 3 cut(s) 481, 535, 772
BsgI GTGCAG 2 cut(s) 522, 771
BsiHKAI GWGCWC 2 cut(s) 559, 658
BsiSI CCGG 5 cut(s) 192, 338, 359, 662, 1160
BslFI GGGAC 5 cut(s) 40, 122, 157, 684, 1804
BslI CCNNNNNNNGG 5 cut(s) 197, 668, 1072, 1787, 1788
BsmAI GTCTC 3 cut(s) 253, 696, 1286
BsmFI GGGAC 5 cut(s) 40, 122, 157, 684, 1804
BsmI GAATGC 3 cut(s) 358, 622, 919
Bsp119I TTCGAA 1 cut(s) 1223
Bsp1286I GDGCHC 3 cut(s) 392, 559, 658
Bsp13I TCCGGA 1 cut(s) 1159
Bsp1407I TGTACA 1 cut(s) 1051
Bsp143I GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 5 cut(s) 158, 179, 1007, 1463, 1653
BspCNI CTCAG 2 cut(s) 1018, 1420
BspEI TCCGGA 1 cut(s) 1159
BspLI GGNNCC 4 cut(s) 112, 400, 1000, 1017
BspMI ACCTGC 1 cut(s) 558
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 6 cut(s) 393, 406, 531, 1010, 1023, 1151
BspT104I TTCGAA 1 cut(s) 1223
BsrGI TGTACA 1 cut(s) 1051
BsrI ACTGG 6 cut(s) 552, 587, 901, 1189, 1341, 1729
BssECI CCNNGG 7 cut(s) 58, 139, 140, 599, 662, 1230, 1323
BssMI GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
BssSI CACGAG 2 cut(s) 498, 1113
BssT1I CCWWGG 2 cut(s) 58, 1230
Bst2BI CACGAG 2 cut(s) 498, 1113
Bst2UI CCWGG 3 cut(s) 141, 216, 1324
Bst4CI ACNGT 5 cut(s) 383, 518, 1051, 1390, 1795
Bst6I CTCTTC 3 cut(s) 305, 1153, 1668
BstAUI TGTACA 1 cut(s) 1051
BstBI TTCGAA 1 cut(s) 1223
BstC8I GCNNGC 3 cut(s) 622, 783, 1283
BstDEI CTNAG 2 cut(s) 1026, 1428
BstDSI CCRYGG 2 cut(s) 58, 599
BstEII GGTNACC 1 cut(s) 1520
BstF5I GGATG 2 cut(s) 31, 1294
BstKTI GATC 6 cut(s) 373, 401, 526, 824, 1018, 1159
BstMAI GTCTC 3 cut(s) 253, 696, 1286
BstMBI GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 353, 500, 554, 630, 653
BstNI CCWGG 3 cut(s) 141, 216, 1324
BstNSI RCATGY 1 cut(s) 1265
BstPI GGTNACC 1 cut(s) 1520
BstSCI CCNGG 5 cut(s) 139, 190, 214, 661, 1322
BstSFI CTRYAG 2 cut(s) 918, 1515
BstV1I GCAGC 3 cut(s) 481, 535, 772
BstV2I GAAGAC 1 cut(s) 531
BstX2I RGATCY 2 cut(s) 398, 1015
BstYI RGATCY 2 cut(s) 398, 1015
BsuI GTATCC 1 cut(s) 1569
BtgI CCRYGG 2 cut(s) 58, 599
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 31, 1294
BtsI GCAGTG 1 cut(s) 1560
BtsIMutI CAGTG 6 cut(s) 388, 523, 559, 886, 1134, 1560
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 3 cut(s) 622, 783, 1283
CaiI CAGNNNCTG 3 cut(s) 50, 509, 1559
Cfr13I GGNCC 4 cut(s) 111, 326, 482, 999
Csp6I GTAC 4 cut(s) 584, 1052, 1386, 1799
CviAII CATG 8 cut(s) 35, 59, 742, 860, 963, 995, 1262, 1716
CviQI GTAC 4 cut(s) 584, 1052, 1386, 1799
DdeI CTNAG 2 cut(s) 1026, 1428
DpnI GATC 6 cut(s) 372, 400, 525, 823, 1017, 1158
DpnII GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
DraI TTTAAA 1 cut(s) 1369
DraIII CACNNNGTG 2 cut(s) 194, 1118
Eam1104I CTCTTC 3 cut(s) 305, 1153, 1668
EarI CTCTTC 3 cut(s) 305, 1153, 1668
Eco130I CCWWGG 2 cut(s) 58, 1230
Eco24I GRGCYC 1 cut(s) 392
Eco47I GGWCC 4 cut(s) 111, 326, 482, 999
Eco57I CTGAAG 2 cut(s) 138, 1292
Eco91I GGTNACC 1 cut(s) 1520
EcoO109I RGGNCCY 2 cut(s) 111, 999
EcoO65I GGTNACC 1 cut(s) 1520
EcoRI GAATTC 2 cut(s) 252, 1225
EcoRII CCWGG 3 cut(s) 139, 214, 1322
EcoT14I CCWWGG 2 cut(s) 58, 1230
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 2 cut(s) 58, 1230
FaeI CATG 8 cut(s) 38, 62, 745, 863, 966, 998, 1265, 1719
FaqI GGGAC 5 cut(s) 40, 122, 157, 684, 1804
FatI CATG 8 cut(s) 34, 58, 741, 859, 962, 994, 1261, 1715
FauI CCCGC 1 cut(s) 172
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 495, 549, 786
FokI GGATG 2 cut(s) 38, 1301
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 3 cut(s) 495, 549, 786
GluI GCNGC 3 cut(s) 495, 549, 786
GsuI CTGGAG 3 cut(s) 655, 1049, 1581
HapII CCGG 5 cut(s) 192, 338, 359, 662, 1160
Hin1II CATG 8 cut(s) 38, 62, 745, 863, 966, 998, 1265, 1719
HincII GTYRAC 1 cut(s) 1351
HindII GTYRAC 1 cut(s) 1351
HindIII AAGCTT 1 cut(s) 1586
HpaI GTTAAC 1 cut(s) 1351
HpaII CCGG 5 cut(s) 192, 338, 359, 662, 1160
HphI GGTGA 8 cut(s) 26, 180, 424, 622, 1130, 1324, 1516, 1532
Hpy166II GTNNAC 2 cut(s) 40, 1351
Hpy188I TCNGA 7 cut(s) 258, 511, 528, 751, 1080, 1186, 1201
Hpy8I GTNNAC 2 cut(s) 40, 1351
HpyAV CCTTC 5 cut(s) 715, 830, 1271, 1309, 1495
HpyCH4III ACNGT 5 cut(s) 383, 518, 1051, 1390, 1795
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 7 cut(s) 503, 781, 788, 863, 1532, 1690, 1771
HpyF10VI GCNNNNNNNGC 5 cut(s) 353, 500, 554, 630, 653
HpyF3I CTNAG 2 cut(s) 1026, 1428
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 8 cut(s) 38, 62, 745, 863, 966, 998, 1265, 1719
Kpn2I TCCGGA 1 cut(s) 1159
Ksp22I TGATCA 1 cut(s) 370
KspAI GTTAAC 1 cut(s) 1351
Kzo9I GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
LmnI GCTCC 4 cut(s) 361, 562, 767, 1543
Lsp1109I GCAGC 3 cut(s) 481, 535, 772
LweI GCATC 2 cut(s) 61, 940
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 3 cut(s) 800, 1395, 1520
MalI GATC 6 cut(s) 372, 400, 525, 823, 1017, 1158
MboI GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
MflI RGATCY 2 cut(s) 398, 1015
MhlI GDGCHC 3 cut(s) 392, 559, 658
MlyI GAGTC 5 cut(s) 163, 746, 838, 1037, 1328
MmeI TCCRAC 2 cut(s) 376, 789
MroI TCCGGA 1 cut(s) 1159
MroXI GAANNNNTTC 1 cut(s) 888
MseI TTAA 4 cut(s) 342, 1350, 1368, 1664
MslI CAYNNNNRTG 1 cut(s) 864
MspA1I CMGCKG 2 cut(s) 158, 548
MspI CCGG 5 cut(s) 192, 338, 359, 662, 1160
MspR9I CCNGG 5 cut(s) 141, 192, 216, 663, 1324
Mva1269I GAATGC 3 cut(s) 358, 622, 919
MvaI CCWGG 3 cut(s) 141, 216, 1324
MwoI GCNNNNNNNGC 5 cut(s) 353, 500, 554, 630, 653
NciI CCSGG 2 cut(s) 192, 663
NcoI CCATGG 1 cut(s) 58
NdeII GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 8 cut(s) 38, 62, 745, 863, 966, 998, 1265, 1719
NlaIV GGNNCC 4 cut(s) 112, 400, 1000, 1017
NmuCI GTSAC 1 cut(s) 1520
NspI RCATGY 1 cut(s) 1265
NspV TTCGAA 1 cut(s) 1223
PasI CCCWGGG 1 cut(s) 140
PctI GAATGC 3 cut(s) 358, 622, 919
PdmI GAANNNNTTC 1 cut(s) 888
PfeI GAWTC 8 cut(s) 17, 211, 299, 464, 506, 746, 1172, 1376
PflFI GACNNNGTC 1 cut(s) 707
PkrI GCNGC 3 cut(s) 496, 550, 787
PleI GAGTC 5 cut(s) 163, 746, 837, 1036, 1327
PpsI GAGTC 5 cut(s) 163, 746, 837, 1036, 1327
PpuMI RGGWCCY 2 cut(s) 111, 999
Psp5II RGGWCCY 2 cut(s) 111, 999
Psp6I CCWGG 3 cut(s) 139, 214, 1322
PspEI GGTNACC 1 cut(s) 1520
PspGI CCWGG 3 cut(s) 139, 214, 1322
PspN4I GGNNCC 4 cut(s) 112, 400, 1000, 1017
PspPI GGNCC 4 cut(s) 111, 326, 482, 999
PspPPI RGGWCCY 2 cut(s) 111, 999
PstNI CAGNNNCTG 3 cut(s) 50, 509, 1559
PsuI RGATCY 2 cut(s) 398, 1015
PsyI GACNNNGTC 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 4 cut(s) 585, 1053, 1387, 1800
RsaNI GTAC 4 cut(s) 584, 1052, 1386, 1799
RseI CAYNNNNRTG 1 cut(s) 864
SaqAI TTAA 4 cut(s) 342, 1350, 1368, 1664
SatI GCNGC 3 cut(s) 495, 549, 786
Sau3AI GATC 6 cut(s) 370, 398, 523, 821, 1015, 1156
Sau96I GGNCC 4 cut(s) 111, 326, 482, 999
SchI GAGTC 5 cut(s) 163, 746, 838, 1037, 1328
ScrFI CCNGG 5 cut(s) 141, 192, 216, 663, 1324
SduI GDGCHC 3 cut(s) 392, 559, 658
SfaNI GCATC 2 cut(s) 61, 940
SfcI CTRYAG 2 cut(s) 918, 1515
SfuI TTCGAA 1 cut(s) 1223
SinI GGWCC 4 cut(s) 111, 326, 482, 999
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 3 cut(s) 235, 754, 1785
SmoI CTYRAG 3 cut(s) 235, 754, 1785
SsiI CCGC 5 cut(s) 158, 179, 1007, 1463, 1653
StyD4I CCNGG 5 cut(s) 139, 190, 214, 661, 1322
StyI CCWWGG 2 cut(s) 58, 1230
TaaI ACNGT 5 cut(s) 383, 518, 1051, 1390, 1795
TaiI ACGT 1 cut(s) 579
TaqI TCGA 3 cut(s) 209, 717, 1223
TatI WGTACW 1 cut(s) 1051
TfiI GAWTC 8 cut(s) 17, 211, 299, 464, 506, 746, 1172, 1376
Tru1I TTAA 4 cut(s) 342, 1350, 1368, 1664
Tru9I TTAA 4 cut(s) 342, 1350, 1368, 1664
TscAI CASTG 6 cut(s) 388, 523, 559, 886, 1134, 1560
TseFI GTSAC 1 cut(s) 1520
TseI GCWGC 3 cut(s) 494, 548, 785
Tsp45I GTSAC 1 cut(s) 1520
TspDTI ATGAA 1 cut(s) 867
TspGWI ACGGA 5 cut(s) 391, 616, 688, 1228, 1588
TspRI CASTG 6 cut(s) 388, 523, 559, 886, 1134, 1560
Tth111I GACNNNGTC 1 cut(s) 707
VpaK11BI GGWCC 4 cut(s) 111, 326, 482, 999
XapI RAATTY 5 cut(s) 252, 333, 418, 1082, 1225
XbaI TCTAGA 1 cut(s) 467
XceI RCATGY 1 cut(s) 1265
XmnI GAANNNNTTC 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.