Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Reverse (-)

22858509 .. 22860071

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTGTATTTCAAAAGAAGACGAAGAAGATCCATCAAGAAATCGAAGGAATCAATCACCATTATCGCTTCCTCAAACTCTGAAACATTTCCAAAAAGATTTGCTTGCTGGTGCTGTAATGGGAGGTGTTGTTCACACGATCGTGGCACCAATCGAAAGAGCCAAGCTTTTATTGCAGACACAAGAGAGCAATATCGCAATCGTTGGAGACGAAGGTCACGCAGGGAAGAGAAGGTTTAAAGGAATGTTTGATTTTATCTTCCGTACTGTTAGAGAAGAAGGTGTTTTATCTTTATGGAGAGGCAATGGAAGCAGTGTGCTCCGTTATTATCCTTCTGTTGCTCTTAATTTCTCTCTTAAGGATCTATATAGAAGCATTCTTAGAAACAGTAGCTCTCAAGAGAATCATATCTTCTCTGGTGCATTAGCTAATTTCATGGCTGGTTCTGCTGCTGGTTGTACTGCTTTGATTGTTGTTTATCCGCTTGATATCGCGCATACTCGTTTAGCTGCTGACATTGGGAAGCCTGAAGCTCGTCAGTTCAGAGGAATCCATCATTTCTTGTCAACGATTCATAAGAAAGATGGGGTTAGAGGAATCTATAGAGGCTTACCTGCGTCTCTACATGGTGTGATTATTCACCGTGGCTTATACTTTGGAGGGTTTGATACAGTTAAGGAGATTTTCTCAGAGGATACTAAACCTGAGTTGGCATTGTGGAAGAGATGGGGTTTGGCTCAAGCTGTGACTACATCTGCTGGTTTGGCTTCTTACCCGTTGGATACAGTTCGTAGACGGATAATGATGCAATCCGGGATGGAGCATCCGATGTACCGTAGCACATTGGATTGTTGGAAGAAGATATATAGGAGTGAAGGGTTGGCTTCGTTTTACCGTGGAGCACTCTCTAATATGTTTAGGAGCACCGGTTCGGCTGCTATCTTGGTTTTTTATGATGAAGTGAAGAGGTTCTTGAATTGGGGAGGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

330

Amino Acids

36.93

Weight (kDa)

9.72

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	29 - 129	2.1e-19	Mitochondrial carrier protein
Mito_carr	PF00153	141 - 231	2.6e-20	Mitochondrial carrier protein
Mito_carr	PF00153	239 - 326	1e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	793
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	482
AclWI	GGATC	2 cut(s)	23, 369
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	3 cut(s)	265, 460, 833
AflII	CTTAAG	1 cut(s)	356
AgeI	ACCGGT	1 cut(s)	926
AgsI	TTSAA	2 cut(s)	12, 976
AleI	CACNNNNGTG	1 cut(s)	140
AloI	GAACNNNNNNTCC	4 cut(s)	114, 146, 913, 945
AluBI	AGCT	6 cut(s)	166, 393, 428, 509, 533, 743
AluI	AGCT	6 cut(s)	166, 393, 428, 509, 533, 743
Alw21I	GWGCWC	3 cut(s)	321, 904, 926
Alw26I	GTCTC	2 cut(s)	201, 624
AlwI	GGATC	2 cut(s)	23, 369
ApeKI	GCWGC	3 cut(s)	449, 509, 935
AsiGI	ACCGGT	1 cut(s)	926
Asp700I	GAANNNNTTC	2 cut(s)	86, 968
AspLEI	GCGC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	2 cut(s)	48, 632
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	3 cut(s)	321, 904, 926
BbvI	GCAGC	3 cut(s)	436, 496, 922
BccI	CCATC	5 cut(s)	40, 561, 578, 720, 811
BciVI	GTATCC	2 cut(s)	688, 775
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	2 cut(s)	201, 624
BfmI	CTRYAG	1 cut(s)	601
BfrI	CTTAAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	622
BfuI	GTATCC	2 cut(s)	688, 775
BisI	GCNGC	3 cut(s)	450, 510, 936
BlsI	GCNGC	3 cut(s)	451, 511, 937
Bme1390I	CCNGG	1 cut(s)	814
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	814
BmsI	GCATC	2 cut(s)	795, 832
BoxI	GACNNNNGTC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
BpuEI	CTTGAG	2 cut(s)	381, 723
BpuMI	CCSGG	1 cut(s)	814
BsaJI	CCNNGG	2 cut(s)	643, 895
BsaWI	WCCGGW	1 cut(s)	926
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 913, 943
Bse118I	RCCGGY	1 cut(s)	926
Bse3DI	GCAATG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	643, 895
BseGI	GGATG	2 cut(s)	822, 823
BseMI	GCAATG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	696, 702
BseXI	GCAGC	3 cut(s)	436, 496, 922
Bsh1236I	CGCG	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	145
BshTI	ACCGGT	1 cut(s)	926
BsiEI	CGRYCG	1 cut(s)	141
BsiHKAI	GWGCWC	3 cut(s)	321, 904, 926
BsiSI	CCGG	2 cut(s)	813, 927
BsmAI	GTCTC	2 cut(s)	201, 624
BsmBI	CGTCTC	2 cut(s)	201, 624
BsmI	GAATGC	1 cut(s)	375
Bsp1286I	GDGCHC	3 cut(s)	321, 904, 926
Bsp143I	GATC	4 cut(s)	28, 138, 361, 987
BspACI	CCGC	1 cut(s)	482
BspCNI	CTCAG	2 cut(s)	697, 701
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	2 cut(s)	23, 369
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	926
BssAI	RCCGGY	1 cut(s)	926
BssECI	CCNNGG	2 cut(s)	643, 895
BssMI	GATC	4 cut(s)	28, 138, 361, 987
Bst4CI	ACNGT	7 cut(s)	268, 389, 644, 673, 787, 836, 896
Bst6I	CTCTTC	3 cut(s)	221, 716, 959
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	380, 688, 705
BstDSI	CCRYGG	2 cut(s)	643, 895
BstF5I	GGATG	2 cut(s)	822, 823
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	4 cut(s)	31, 141, 364, 990
BstMAI	GTCTC	2 cut(s)	201, 624
BstMBI	GATC	4 cut(s)	28, 138, 361, 987
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 309, 446, 764
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	812
BstSFI	CTRYAG	1 cut(s)	601
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	3 cut(s)	436, 496, 922
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	3 cut(s)	28, 361, 987
BstYI	RGATCY	3 cut(s)	28, 361, 987
BsuI	GTATCC	2 cut(s)	688, 775
BtgI	CCRYGG	2 cut(s)	643, 895
BtsCI	GGATG	2 cut(s)	822, 823
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	105
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	926
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	3 cut(s)	264, 459, 832
CspAI	ACCGGT	1 cut(s)	926
CviAII	CATG	2 cut(s)	436, 626
CviQI	GTAC	3 cut(s)	264, 459, 832
DdeI	CTNAG	3 cut(s)	380, 688, 705
DpnI	GATC	4 cut(s)	30, 140, 363, 989
DpnII	GATC	4 cut(s)	28, 138, 361, 987
DraI	TTTAAA	1 cut(s)	238
Eam1104I	CTCTTC	3 cut(s)	221, 716, 959
EarI	CTCTTC	3 cut(s)	221, 716, 959
Eco32I	GATATC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	490
Esp3I	CGTCTC	2 cut(s)	201, 624
FaeI	CATG	2 cut(s)	439, 629
FalI	AAGNNNNNCTT	4 cut(s)	87, 119, 956, 988
FatI	CATG	2 cut(s)	435, 625
FblI	GTMKAC	1 cut(s)	793
Fnu4HI	GCNGC	3 cut(s)	450, 510, 936
FokI	GGATG	2 cut(s)	810, 829
Fsp4HI	GCNGC	3 cut(s)	450, 510, 936
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	3 cut(s)	450, 510, 936
HapII	CCGG	2 cut(s)	813, 927
HgaI	GACGC	1 cut(s)	606
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	2 cut(s)	439, 629
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	49, 403, 549, 571, 597
HpaII	CCGG	2 cut(s)	813, 927
HphI	GGTGA	2 cut(s)	48, 632
Hpy166II	GTNNAC	3 cut(s)	133, 567, 794
Hpy188I	TCNGA	4 cut(s)	81, 545, 691, 828
Hpy188III	TCNNGA	3 cut(s)	36, 398, 973
Hpy8I	GTNNAC	3 cut(s)	133, 567, 794
HpyAV	CCTTC	6 cut(s)	39, 206, 225, 272, 342, 869
HpyCH4III	ACNGT	7 cut(s)	268, 389, 644, 673, 787, 836, 896
HpyCH4V	TGCA	3 cut(s)	175, 422, 808
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 309, 446, 764
HpyF3I	CTNAG	3 cut(s)	380, 688, 705
Hsp92II	CATG	2 cut(s)	439, 629
HspAI	GCGC	1 cut(s)	494
Kzo9I	GATC	4 cut(s)	28, 138, 361, 987
LmnI	GCTCC	4 cut(s)	324, 820, 899, 921
Lsp1109I	GCAGC	3 cut(s)	436, 496, 922
LweI	GCATC	2 cut(s)	795, 832
MaeIII	GTNAC	2 cut(s)	215, 745
MalI	GATC	4 cut(s)	30, 140, 363, 989
MboI	GATC	4 cut(s)	28, 138, 361, 987
MflI	RGATCY	3 cut(s)	28, 361, 987
MhlI	GDGCHC	3 cut(s)	321, 904, 926
MluCI	AATT	3 cut(s)	346, 430, 976
MmeI	TCCRAC	3 cut(s)	184, 759, 833
MroXI	GAANNNNTTC	2 cut(s)	86, 968
MseI	TTAA	4 cut(s)	237, 345, 357, 675
MslI	CAYNNNNRTG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	2 cut(s)	813, 927
MspR9I	CCNGG	1 cut(s)	814
Mva1269I	GAATGC	1 cut(s)	375
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	172, 309, 446, 764
NciI	CCSGG	1 cut(s)	814
NdeII	GATC	4 cut(s)	28, 138, 361, 987
NlaIII	CATG	2 cut(s)	439, 629
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	215, 745
OliI	CACNNNNGTG	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	2 cut(s)	86, 968
PfeI	GAWTC	5 cut(s)	49, 403, 549, 571, 597
PfoI	TCCNGGA	1 cut(s)	812
PinAI	ACCGGT	1 cut(s)	926
PkrI	GCNGC	3 cut(s)	451, 511, 937
Ple19I	CGATCG	1 cut(s)	141
PshAI	GACNNNNGTC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	147
PsuI	RGATCY	3 cut(s)	28, 361, 987
PvuI	CGATCG	1 cut(s)	141
RsaI	GTAC	3 cut(s)	265, 460, 833
RsaNI	GTAC	3 cut(s)	264, 459, 832
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	237, 345, 357, 675
SatI	GCNGC	3 cut(s)	450, 510, 936
Sau3AI	GATC	4 cut(s)	28, 138, 361, 987
ScrFI	CCNGG	1 cut(s)	814
SduI	GDGCHC	3 cut(s)	321, 904, 926
SfaNI	GCATC	2 cut(s)	795, 832
SfcI	CTRYAG	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	3 cut(s)	356, 396, 738
SmoI	CTYRAG	3 cut(s)	356, 396, 738
Sse9I	AATT	3 cut(s)	346, 430, 976
SsiI	CCGC	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	812
TaaI	ACNGT	7 cut(s)	268, 389, 644, 673, 787, 836, 896
TaqI	TCGA	2 cut(s)	43, 153
TasI	AATT	3 cut(s)	346, 430, 976
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	5 cut(s)	49, 403, 549, 571, 597
Tru1I	TTAA	4 cut(s)	237, 345, 357, 675
Tru9I	TTAA	4 cut(s)	237, 345, 357, 675
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	215, 745
TseI	GCWGC	3 cut(s)	449, 509, 935
Tsp45I	GTSAC	2 cut(s)	215, 745
TspDTI	ATGAA	3 cut(s)	424, 563, 972
TspGWI	ACGGA	3 cut(s)	251, 311, 811
TspRI	CASTG	1 cut(s)	319
Vha464I	CTTAAG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	793
XmnI	GAANNNNTTC	2 cut(s)	86, 968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.