Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Reverse (-)

1620950 .. 1623689

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGGGAAGATGATGGTGGCCCAGAAAATTCAGGGCCGCGCGATTGGCTGACCAACTTCCCCCGTGATCTGATGGCCGGGGCGGTGATGGGTGGGGTGGTGCACACGATTGTGGCTCCGATAGAGAGAGCCAAGCTGTTGCTGCAAACCCAAGAGAGCAATATGGCCATTCTTGGGGGAGGAAGGACCAAATTCAAGGGCATGTTGGATTGTATAGCCCGTACGGTTAGAGAAGAAGGCATCTTGTCTTTGTGGAGAGGCAATGGCAGCAGTGTTCTTCGTTATTACCCTTCTGTGGCTCTCAATTTTTCCCTCAAGGATCTTTATAGAAACATGTTAAGGAGCGGAAGCTTAGATGGTCATTTTTTGTCTGGTGCACCTGCCAATTTCATTGCTGGGGCTGCTGCTGGTTGTACAACATTGATTATAATATACCCCCTTGATATTGCACATACCCGCCTTGCTGCTGACATTGGAAGAAATGAAGCCCGTCAATTTCGAGGGATCTACCATTTCCTGGTTACCATTCGCCAAAAGGATGGAACTCGAGGGATTTACAGAGGTCTTCCTGCATCGTTACAGGGGATGATCGTTCACCGAGGACTTTATTTTGGAGGCTTTGATACAATGAAAGAGATCTTGTCAGAAAATTCGAAGAAACATGAGCTGGAGTTGCCACTGTGGAAACGTTGGGTAGTGGCTCAGGCAGTCACGACCTCTGCTGGATTGTTGTCATATCCACTGGATACAGTTCGGAGGAGGATGATGATGCAGTCTGGCTTGGAACAGCAGATGTACAGTGGTACTCTGGACTGCTGGAAGAAGATTTATAGGAAAGAAGGGGTAGTTTCATTTTATCGTGGTGCAGTTTCTAACGTGGTTAGGAGTACTGGCGCGGCTGCCATCTTGGTTTTATACGACGAGGTCAAGAAGTTCATGCATTGGGGCAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

319

Amino Acids

35.44

Weight (kDa)

9.75

Isoelectric Point (pI)

36.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	19 - 115	3.5e-21	Mitochondrial carrier protein
Mito_carr	PF00153	127 - 217	5.1e-19	Mitochondrial carrier protein
Mito_carr	PF00153	225 - 314	9.4e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	428, 955
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	3 cut(s)	40, 42, 896
AciI	CCGC	5 cut(s)	38, 83, 345, 457, 896
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	2 cut(s)	327, 512
AcoI	YGGCCR	2 cut(s)	75, 165
AcsI	RAATTY	3 cut(s)	28, 191, 649
AfaI	GTAC	5 cut(s)	223, 415, 797, 805, 889
AfiI	CCNNNNNNNGG	3 cut(s)	174, 295, 517
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	516
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	136, 351, 667
AluI	AGCT	3 cut(s)	136, 351, 667
Alw21I	GWGCWC	2 cut(s)	105, 379
Alw44I	GTGCAC	2 cut(s)	101, 375
AlwI	GGATC	2 cut(s)	327, 512
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	4 cut(s)	19, 35, 75, 165
ApaLI	GTGCAC	2 cut(s)	101, 375
ApeKI	GCWGC	6 cut(s)	142, 267, 401, 404, 464, 899
ApoI	RAATTY	3 cut(s)	28, 191, 649
AspLEI	GCGC	2 cut(s)	42, 896
AspS9I	GGNCC	3 cut(s)	20, 35, 186
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	97, 587
AsuII	TTCGAA	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	186
BaeGI	GKGCMC	2 cut(s)	105, 379
BalI	TGGCCA	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	105, 379
BbvI	GCAGC	6 cut(s)	129, 279, 388, 391, 451, 886
BccI	CCATC	6 cut(s)	8, 67, 82, 350, 533, 911
BciT130I	CCWGG	1 cut(s)	518
BciVI	GTATCC	1 cut(s)	739
BcnI	CCSGG	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	739
BglII	AGATCT	1 cut(s)	636
BisI	GCNGC	8 cut(s)	38, 143, 268, 402, 405, 465, 897, 900
BlsI	GCNGC	8 cut(s)	39, 144, 269, 403, 406, 466, 898, 901
BmcAI	AGTACT	1 cut(s)	889
Bme1390I	CCNGG	2 cut(s)	79, 518
Bme18I	GGWCC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	3 cut(s)	20, 35, 186
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	79, 518
BmsI	GCATC	3 cut(s)	249, 581, 759
BpiI	GAAGAC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	689
Bpu10I	CCTNAGC	1 cut(s)	702
Bpu14I	TTCGAA	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	78, 598
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 295, 517
Bse1I	ACTGG	2 cut(s)	747, 895
Bse3DI	GCAATG	2 cut(s)	268, 390
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	78, 598
BseGI	GGATG	3 cut(s)	544, 591, 768
BseLI	CCNNNNNNNGG	3 cut(s)	174, 295, 517
BseMI	GCAATG	2 cut(s)	268, 390
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	2 cut(s)	747, 895
BseRI	GAGGAG	1 cut(s)	772
BseSI	GKGCMC	2 cut(s)	105, 379
BseXI	GCAGC	6 cut(s)	129, 279, 388, 391, 451, 886
BseYI	CCCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	885
Bsh1236I	CGCG	3 cut(s)	40, 42, 896
BshFI	GGCC	4 cut(s)	21, 37, 77, 167
BsiHKAI	GWGCWC	2 cut(s)	105, 379
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	78
BsiWI	CGTACG	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	174, 295, 517
BsnI	GGCC	4 cut(s)	21, 37, 77, 167
BsoBI	CYCGRG	1 cut(s)	546
Bsp119I	TTCGAA	1 cut(s)	653
Bsp1286I	GDGCHC	2 cut(s)	105, 379
Bsp1407I	TGTACA	2 cut(s)	413, 795
Bsp143I	GATC	5 cut(s)	67, 319, 504, 588, 636
BspACI	CCGC	5 cut(s)	38, 83, 345, 457, 896
BspANI	GGCC	4 cut(s)	21, 37, 77, 167
BspCNI	CTCAG	1 cut(s)	715
BspFNI	CGCG	3 cut(s)	40, 42, 896
BspLI	GGNNCC	1 cut(s)	117
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	327, 512
BspT104I	TTCGAA	1 cut(s)	653
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	2 cut(s)	268, 390
BsrGI	TGTACA	2 cut(s)	413, 795
BsrI	ACTGG	2 cut(s)	747, 895
BssECI	CCNNGG	2 cut(s)	78, 598
BssMI	GATC	5 cut(s)	67, 319, 504, 588, 636
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	4 cut(s)	226, 681, 751, 800
BstAUI	TGTACA	2 cut(s)	413, 795
BstBI	TTCGAA	1 cut(s)	653
BstDEI	CTNAG	2 cut(s)	352, 702
BstEII	GGTNACC	1 cut(s)	520
BstF5I	GGATG	3 cut(s)	544, 591, 768
BstFNI	CGCG	3 cut(s)	40, 42, 896
BstHHI	GCGC	2 cut(s)	42, 896
BstKTI	GATC	5 cut(s)	70, 322, 507, 591, 639
BstMBI	GATC	5 cut(s)	67, 319, 504, 588, 636
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 142, 267, 401, 673
BstNI	CCWGG	1 cut(s)	518
BstNSI	RCATGY	2 cut(s)	205, 337
BstPI	GGTNACC	1 cut(s)	520
BstSCI	CCNGG	2 cut(s)	77, 516
BstSLI	GKGCMC	2 cut(s)	105, 379
BstUI	CGCG	3 cut(s)	40, 42, 896
BstV1I	GCAGC	6 cut(s)	129, 279, 388, 391, 451, 886
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	3 cut(s)	319, 504, 636
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	3 cut(s)	319, 504, 636
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	4 cut(s)	21, 37, 77, 167
BtsCI	GGATG	3 cut(s)	544, 591, 768
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	4 cut(s)	277, 677, 740, 805
BveI	ACCTGC	1 cut(s)	388
CfoI	GCGC	2 cut(s)	42, 896
Cfr13I	GGNCC	3 cut(s)	20, 35, 186
Csp6I	GTAC	5 cut(s)	222, 414, 796, 804, 888
CviAII	CATG	4 cut(s)	202, 334, 662, 937
CviQI	GTAC	5 cut(s)	222, 414, 796, 804, 888
DdeI	CTNAG	2 cut(s)	352, 702
DpnI	GATC	5 cut(s)	69, 321, 506, 590, 638
DpnII	GATC	5 cut(s)	67, 319, 504, 588, 636
EaeI	YGGCCR	2 cut(s)	75, 165
Eco47I	GGWCC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	516
EcoT22I	ATGCAT	1 cut(s)	942
FaeI	CATG	4 cut(s)	205, 337, 665, 940
FatI	CATG	4 cut(s)	201, 333, 661, 936
FauI	CCCGC	1 cut(s)	464
Fnu4HI	GCNGC	8 cut(s)	38, 143, 268, 402, 405, 465, 897, 900
FokI	GGATG	3 cut(s)	551, 598, 775
Fsp4HI	GCNGC	8 cut(s)	38, 143, 268, 402, 405, 465, 897, 900
GlaI	GCGC	2 cut(s)	41, 895
GluI	GCNGC	8 cut(s)	38, 143, 268, 402, 405, 465, 897, 900
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	4 cut(s)	21, 37, 77, 167
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	2 cut(s)	42, 896
Hin1II	CATG	4 cut(s)	205, 337, 665, 940
Hin6I	GCGC	2 cut(s)	40, 894
HinP1I	GCGC	2 cut(s)	40, 894
HindIII	AAGCTT	1 cut(s)	349
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	97, 587
Hpy166II	GTNNAC	3 cut(s)	103, 377, 595
Hpy188I	TCNGA	4 cut(s)	72, 120, 646, 756
Hpy188III	TCNNGA	3 cut(s)	712, 809, 928
Hpy8I	GTNNAC	3 cut(s)	103, 377, 595
Hpy99I	CGWCG	1 cut(s)	923
HpyAV	CCTTC	4 cut(s)	177, 230, 300, 833
HpyCH4III	ACNGT	4 cut(s)	226, 681, 751, 800
HpyCH4IV	ACGT	2 cut(s)	688, 876
HpyCH4V	TGCA	8 cut(s)	103, 145, 377, 449, 572, 772, 866, 940
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 142, 267, 401, 673
HpyF3I	CTNAG	2 cut(s)	352, 702
HpySE526I	ACGT	2 cut(s)	688, 876
Hsp92II	CATG	4 cut(s)	205, 337, 665, 940
HspAI	GCGC	2 cut(s)	40, 894
Kzo9I	GATC	5 cut(s)	67, 319, 504, 588, 636
LmnI	GCTCC	2 cut(s)	121, 342
Lsp1109I	GCAGC	6 cut(s)	129, 279, 388, 391, 451, 886
LweI	GCATC	3 cut(s)	249, 581, 759
MaeII	ACGT	2 cut(s)	688, 876
MaeIII	GTNAC	3 cut(s)	520, 576, 709
MalI	GATC	5 cut(s)	69, 321, 506, 590, 638
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	5 cut(s)	67, 319, 504, 588, 636
MboII	GAAGA	8 cut(s)	20, 245, 269, 489, 557, 667, 832, 835
MflI	RGATCY	3 cut(s)	319, 504, 636
MhlI	GDGCHC	2 cut(s)	105, 379
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	6 cut(s)	28, 191, 304, 385, 494, 649
MluNI	TGGCCA	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	186
Mox20I	TGGCCA	1 cut(s)	167
Mph1103I	ATGCAT	1 cut(s)	942
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	167
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	79, 518
MvaI	CCWGG	1 cut(s)	518
MvnI	CGCG	3 cut(s)	40, 42, 896
MwoI	GCNNNNNNNGC	5 cut(s)	46, 142, 267, 401, 673
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	67, 319, 504, 588, 636
NlaIII	CATG	4 cut(s)	205, 337, 665, 940
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	709
NsiI	ATGCAT	1 cut(s)	942
NspI	RCATGY	2 cut(s)	205, 337
NspV	TTCGAA	1 cut(s)	653
OliI	CACNNNNGTG	1 cut(s)	110
PaeR7I	CTCGAG	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	388
PciI	ACATGT	1 cut(s)	333
Pfl23II	CGTACG	1 cut(s)	221
PflFI	GACNNNGTC	1 cut(s)	923
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	8 cut(s)	39, 144, 269, 403, 406, 466, 898, 901
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	2 cut(s)	428, 955
Psp1406I	AACGTT	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	516
PspEI	GGTNACC	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	516
PspLI	CGTACG	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	3 cut(s)	20, 35, 186
PspXI	VCTCGAGB	1 cut(s)	546
PsuI	RGATCY	3 cut(s)	319, 504, 636
PsyI	GACNNNGTC	1 cut(s)	923
RsaI	GTAC	5 cut(s)	223, 415, 797, 805, 889
RsaNI	GTAC	5 cut(s)	222, 414, 796, 804, 888
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	8 cut(s)	38, 143, 268, 402, 405, 465, 897, 900
Sau3AI	GATC	5 cut(s)	67, 319, 504, 588, 636
Sau96I	GGNCC	3 cut(s)	20, 35, 186
ScaI	AGTACT	1 cut(s)	889
ScrFI	CCNGG	2 cut(s)	79, 518
SduI	GDGCHC	2 cut(s)	105, 379
SetI	ASST	9 cut(s)	138, 353, 382, 565, 669, 691, 719, 879, 927
SfaNI	GCATC	3 cut(s)	249, 581, 759
Sfr274I	CTCGAG	1 cut(s)	546
SfuI	TTCGAA	1 cut(s)	653
SinI	GGWCC	1 cut(s)	186
SlaI	CTCGAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	314, 546
SmoI	CTYRAG	2 cut(s)	314, 546
Sse9I	AATT	6 cut(s)	28, 191, 304, 385, 494, 649
SsiI	CCGC	5 cut(s)	38, 83, 345, 457, 896
StyD4I	CCNGG	2 cut(s)	77, 516
TaaI	ACNGT	4 cut(s)	226, 681, 751, 800
TaiI	ACGT	2 cut(s)	691, 879
TaqI	TCGA	3 cut(s)	499, 547, 653
TasI	AATT	6 cut(s)	28, 191, 304, 385, 494, 649
TatI	WGTACW	3 cut(s)	413, 795, 887
TauI	GCSGC	2 cut(s)	40, 899
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	4 cut(s)	277, 684, 747, 805
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	6 cut(s)	142, 267, 401, 404, 464, 899
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	5 cut(s)	379, 498, 644, 840, 925
TspRI	CASTG	4 cut(s)	277, 684, 747, 805
Tth111I	GACNNNGTC	1 cut(s)	923
Van91I	CCANNNNNTGG	1 cut(s)	517
VneI	GTGCAC	2 cut(s)	101, 375
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	3 cut(s)	28, 191, 649
XceI	RCATGY	2 cut(s)	205, 337
XhoI	CTCGAG	1 cut(s)	546
ZrmI	AGTACT	1 cut(s)	889
Zsp2I	ATGCAT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.