Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Reverse (-)

3252231 .. 3255250

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAGCAAAGATGACGACGACCCAGAAGCGAAAACGTCGAAGTCACAGCCGCCGGATTGGCTGACCAACTTCCACCGTGATCTGATGGCCGGGGCGGTGATGGGCAGCGTCGTGCACACGATTGTGGCCCCAATCGAGAGAGCCAAGCTTTTGCTGCAGACCCAGGAGAGCAACCTGACCATTCTCGGCGGTGGACGGACGAAGTTCAAGGGTATGGTGGATTGCATCGCCCGGACGGTCAGGGAAGAAGGCATCCTGTCTCTTTGGAGAGGCAATGGGAGCAGCGTCCTCCGATACTACCCTTCGGTCGCTCTCAATTTCTCCCTCAAGGACCTTTATAGGAACGTATTAAGAAGTGGACACTCTCAAGATGGTCATTTTTTGGCTGGTCCATCTGCAAATTTCATGGCTGGAGCTGCTGCTGGTTGTACAACATTGATCATAATATACCCGCTTGATATTGCACATACCCGCCTGGCTGCTGACATTGGTAGAACTGAAATCCGTCAATTTCGAGGAATATACCATTTCTTGTCTACCATTCGCCAAAAGGACGGGATTCAAGGGGTTTACAGAGGGCTTCCAGCCTCCTTACAGGGAATGGTCATTCACCGGGGGCTTTACTTTGGAGGCTTTGATACGATGAAGGAAATTTTATCAGAAGACTCTCAACGTGATTTGCCATTGTGGCAGCGTTGGGCGGTGGCTCAGGCAGTCACAACCTCAGCTGGGTTGTTGTCATATCCACTTGATACAGTTCGGAGGCGGATGATGATGCAGTCTGGACTGGAACAGCGGATGTACAATAACACTTTGGACTGCTGGAGGAAGATATATAGGAGAGAAGGGGTGACTTCATTTTATCGTGGTGCAGTTTCGAATGTGTTTAGGAGTACCGGCGCTGCTGCCATCTTGGTTTTGTATGACGAGGTCAAGAAGTTCATGAATTGGGGTGGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

321

Amino Acids

35.79

Weight (kDa)

9.57

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	536
AciI	CCGC	8 cut(s)	50, 95, 189, 452, 472, 701, 766, 796
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	400, 651
AfaI	GTAC	3 cut(s)	430, 803, 895
AfiI	CCNNNNNNNGG	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	208, 563
AjnI	CCWGG	2 cut(s)	162, 474
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	148, 416, 728
AluI	AGCT	3 cut(s)	148, 416, 728
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	264
Alw44I	GTGCAC	1 cut(s)	113
AoxI	GGCC	2 cut(s)	87, 126
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	9 cut(s)	105, 154, 282, 416, 419, 479, 691, 902, 905
ApoI	RAATTY	2 cut(s)	400, 651
AspLEI	GCGC	1 cut(s)	902
AspS9I	GGNCC	3 cut(s)	127, 331, 389
AsuC2I	CCSGG	3 cut(s)	91, 232, 614
AsuHPI	GGTGA	3 cut(s)	109, 602, 862
AsuII	TTCGAA	1 cut(s)	878
AvaII	GGWCC	2 cut(s)	331, 389
BaeGI	GKGCMC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	724
BbvI	GCAGC	9 cut(s)	117, 141, 294, 403, 406, 466, 703, 889, 892
BccI	CCATC	5 cut(s)	79, 94, 365, 400, 917
BciT130I	CCWGG	2 cut(s)	164, 476
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	3 cut(s)	91, 232, 614
BcoDI	GTCTC	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	903
BglI	GCCNNNNNGGC	2 cut(s)	58, 688
Bme1390I	CCNGG	5 cut(s)	91, 164, 232, 476, 614
Bme18I	GGWCC	2 cut(s)	331, 389
BmgT120I	GGNCC	3 cut(s)	127, 331, 389
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	5 cut(s)	91, 164, 232, 476, 614
BmsI	GCATC	3 cut(s)	234, 261, 765
BpiI	GAAGAC	1 cut(s)	669
BpmI	CTGGAG	2 cut(s)	432, 844
Bpu10I	CCTNAGC	2 cut(s)	708, 724
Bpu14I	TTCGAA	1 cut(s)	878
BpuEI	CTTGAG	2 cut(s)	311, 351
BpuMI	CCSGG	3 cut(s)	91, 232, 614
BsaJI	CCNNGG	3 cut(s)	90, 162, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	729
Bse118I	RCCGGY	1 cut(s)	896
Bse1I	ACTGG	1 cut(s)	792
Bse3DI	GCAATG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	164, 476
BseDI	CCNNGG	3 cut(s)	90, 162, 613
BseGI	GGATG	3 cut(s)	252, 774, 804
BseLI	CCNNNNNNNGG	1 cut(s)	729
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	2 cut(s)	722, 738
BseNI	ACTGG	1 cut(s)	792
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	9 cut(s)	117, 141, 294, 403, 406, 466, 703, 889, 892
BseYI	CCCAGC	1 cut(s)	728
BsgI	GTGCAG	1 cut(s)	891
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	2 cut(s)	89, 128
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	5 cut(s)	53, 90, 232, 613, 897
BslI	CCNNNNNNNGG	1 cut(s)	729
BsmAI	GTCTC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	89, 128
Bsp119I	TTCGAA	1 cut(s)	878
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	2 cut(s)	428, 801
Bsp143I	GATC	2 cut(s)	79, 438
BspACI	CCGC	8 cut(s)	50, 95, 189, 452, 472, 701, 766, 796
BspANI	GGCC	2 cut(s)	89, 128
BspCNI	CTCAG	2 cut(s)	721, 737
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	878
BsrDI	GCAATG	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	896
BsrGI	TGTACA	2 cut(s)	428, 801
BsrI	ACTGG	1 cut(s)	792
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	3 cut(s)	90, 162, 613
BssMI	GATC	2 cut(s)	79, 438
Bst2UI	CCWGG	2 cut(s)	164, 476
Bst4CI	ACNGT	3 cut(s)	77, 238, 757
BstAUI	TGTACA	2 cut(s)	428, 801
BstBI	TTCGAA	1 cut(s)	878
BstDEI	CTNAG	2 cut(s)	708, 724
BstF5I	GGATG	3 cut(s)	252, 774, 804
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	2 cut(s)	82, 441
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	79, 438
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	5 cut(s)	58, 154, 279, 416, 688
BstNI	CCWGG	2 cut(s)	164, 476
BstSCI	CCNGG	5 cut(s)	89, 162, 230, 474, 612
BstSFI	CTRYAG	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	9 cut(s)	117, 141, 294, 403, 406, 466, 703, 889, 892
BstV2I	GAAGAC	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	89, 128
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	252, 774, 804
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	1 cut(s)	902
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	127, 331, 389
CseI	GACGC	2 cut(s)	97, 274
Csp6I	GTAC	3 cut(s)	429, 802, 894
CviAII	CATG	2 cut(s)	406, 943
CviQI	GTAC	3 cut(s)	429, 802, 894
DdeI	CTNAG	2 cut(s)	708, 724
DpnI	GATC	2 cut(s)	81, 440
DpnII	GATC	2 cut(s)	79, 438
EaeI	YGGCCR	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	781
Eco47I	GGWCC	2 cut(s)	331, 389
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	162, 474
FaeI	CATG	2 cut(s)	409, 946
FatI	CATG	2 cut(s)	405, 942
FauI	CCCGC	2 cut(s)	459, 479
FbaI	TGATCA	1 cut(s)	438
FblI	GTMKAC	1 cut(s)	536
FokI	GGATG	3 cut(s)	239, 781, 811
GlaI	GCGC	1 cut(s)	901
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	2 cut(s)	432, 844
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	2 cut(s)	89, 128
HapII	CCGG	5 cut(s)	53, 90, 232, 613, 897
HgaI	GACGC	2 cut(s)	97, 274
HhaI	GCGC	1 cut(s)	902
Hin1II	CATG	2 cut(s)	409, 946
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	559, 665
HpaII	CCGG	5 cut(s)	53, 90, 232, 613, 897
HphI	GGTGA	3 cut(s)	109, 602, 862
Hpy166II	GTNNAC	5 cut(s)	115, 194, 359, 537, 571
Hpy188I	TCNGA	4 cut(s)	84, 293, 661, 762
Hpy188III	TCNNGA	5 cut(s)	136, 368, 783, 934, 943
Hpy8I	GTNNAC	5 cut(s)	115, 194, 359, 537, 571
Hpy99I	CGWCG	3 cut(s)	20, 40, 113
HpyAV	CCTTC	4 cut(s)	242, 312, 640, 839
HpyCH4III	ACNGT	3 cut(s)	77, 238, 757
HpyCH4IV	ACGT	3 cut(s)	35, 345, 673
HpyCH4V	TGCA	7 cut(s)	115, 157, 225, 398, 464, 778, 872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	58, 154, 279, 416, 688
HpyF3I	CTNAG	2 cut(s)	708, 724
HpySE526I	ACGT	3 cut(s)	35, 345, 673
Hsp92II	CATG	2 cut(s)	409, 946
HspAI	GCGC	1 cut(s)	900
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	2 cut(s)	79, 438
LmnI	GCTCC	2 cut(s)	279, 413
Lsp1109I	GCAGC	9 cut(s)	117, 141, 294, 403, 406, 466, 703, 889, 892
LweI	GCATC	3 cut(s)	234, 261, 765
MaeII	ACGT	3 cut(s)	35, 345, 673
MaeIII	GTNAC	3 cut(s)	42, 715, 850
MalI	GATC	2 cut(s)	81, 440
MboI	GATC	2 cut(s)	79, 438
MboII	GAAGA	3 cut(s)	257, 674, 841
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	5 cut(s)	316, 400, 509, 651, 946
MlyI	GAGTC	1 cut(s)	659
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	122
MspA1I	CMGCKG	2 cut(s)	728, 796
MspI	CCGG	5 cut(s)	53, 90, 232, 613, 897
MspR9I	CCNGG	5 cut(s)	91, 164, 232, 476, 614
MvaI	CCWGG	2 cut(s)	164, 476
MwoI	GCNNNNNNNGC	5 cut(s)	58, 154, 279, 416, 688
NciI	CCSGG	3 cut(s)	91, 232, 614
NdeII	GATC	2 cut(s)	79, 438
NlaIII	CATG	2 cut(s)	409, 946
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	3 cut(s)	42, 715, 850
NspV	TTCGAA	1 cut(s)	878
OliI	CACNNNNGTG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	942
PfeI	GAWTC	1 cut(s)	559
PflFI	GACNNNGTC	1 cut(s)	929
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	1 cut(s)	331
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	162, 474
PspFI	CCCAGC	1 cut(s)	728
PspGI	CCWGG	2 cut(s)	162, 474
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	3 cut(s)	127, 331, 389
PspPPI	RGGWCCY	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	159
PsyI	GACNNNGTC	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	3 cut(s)	430, 803, 895
RsaNI	GTAC	3 cut(s)	429, 802, 894
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	350
Sau3AI	GATC	2 cut(s)	79, 438
Sau96I	GGNCC	3 cut(s)	127, 331, 389
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	5 cut(s)	91, 164, 232, 476, 614
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	234, 261, 765
SfcI	CTRYAG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	878
SinI	GGWCC	2 cut(s)	331, 389
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	326, 366
SmoI	CTYRAG	2 cut(s)	326, 366
Sse9I	AATT	5 cut(s)	316, 400, 509, 651, 946
SsiI	CCGC	8 cut(s)	50, 95, 189, 452, 472, 701, 766, 796
StyD4I	CCNGG	5 cut(s)	89, 162, 230, 474, 612
TaaI	ACNGT	3 cut(s)	77, 238, 757
TaiI	ACGT	3 cut(s)	38, 348, 676
TaqI	TCGA	4 cut(s)	38, 135, 514, 878
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	5 cut(s)	316, 400, 509, 651, 946
TatI	WGTACW	2 cut(s)	428, 801
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseFI	GTSAC	3 cut(s)	42, 715, 850
TseI	GCWGC	9 cut(s)	105, 154, 282, 416, 419, 479, 691, 902, 905
Tsp45I	GTSAC	3 cut(s)	42, 715, 850
TspDTI	ATGAA	5 cut(s)	394, 659, 846, 931, 959
TspGWI	ACGGA	2 cut(s)	211, 494
Tth111I	GACNNNGTC	1 cut(s)	929
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	331, 389
XapI	RAATTY	2 cut(s)	400, 651
XmiI	GTMKAC	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.