Rroxscaffold_7G00158010

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
1626757 .. 1630162
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158010.1

Sequence Viewer

Length: 1119 bp
ATGAGGGAAGATGGTGGTGGCCCAGAAAACTCAGGGTCGAAGCAATCAGGGCCGCACGATTGGCTGACCAACTTCCACCGTGATCTGATGGCCGGGGCGGTGATGGGTGGGGTGGTGCACACGATTGTGGCTCCGATAGAGAGAGCCAAGCTGTTGCTGCAGACCCAAGAGAGCAATATGGCCATTCTTGGGGGAGGAAGGACCAAATTCAAGGGCATGTTGGATTGTATAGCCCGTACGGTTAGAGAAGAAGGCATCTTGTCTTTGTGGAGAGGCAATGGCAGCAGTGTTCTTCGTTATTACCCTTCTGTAGCTCTCAATTTTTCCCTCAAGGAACAGCACTGGGTTGCAATGTTTGAGAGTGATGATGGTGAGTTTTCTGTGACTTTTGAGATATCAAGCATGATGCAGGGCAGCACAAGGGTGGGAGGATGCCGTTCCCTTGATAAGCCTGAAAAGAAGAAATTAGAAAAGGCTAAGGATCTTTATAGAAACATGTTAAGGAGCGGAAGCTTAGATGGTCATTTTTTGTCTGGTGCACCTGCCAATTTCATTGCTGGGGCTGCTGCTGGTTGCACAACATTGATTATAATATACCCCCTTGATATTGCACATACCCGCCTTGCTGCTGACATTGGAAGAAATGAAGCCCGTCAATTTCGAGGGATCTACCATTTCCTGGTTACCATTCGCCAGAAGGATGGGACTCGAGGCATTTACAGAGGTCTTCCTGCCTCGCTACAGGGGATGGTCGTTCACCGAGGACTTTATTTTGGAGGCTTTGATACAATGAAAGAGATCTTATCAGAAAATTCAAAGAAACGTGAGCTGGAGTTGCCAGTGTGGAAACGTTGGGTAGTGGCTCAGGCAGTCACGACCTCTGCTGGATTGCTGTCATATCCACTGGATACAGTTCGGAGGAGGATGATGATGCAGTCTGGCTTGGAACAGCAGATGTACAGTGGTACTCTGGACTGCTGGAAGAAGATTTATAGGAAAGAAGGGGTAGTTTCATTTTATCGTGGTGCAGTTTCTAACATGGTTAGGAGTACTGGCGCAGCTGCCATCTTGGTTTTATACGACGAGGTCAAGAAGTTCATGCATTGGGGCAGATTATAA

Protein Analysis

372

Amino Acids

41.46

Weight (kDa)

9.62

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 24 - 113 9.9e-20 Mitochondrial carrier protein
Mito_carr PF00153 181 - 271 6.8e-19 Mitochondrial carrier protein
Mito_carr PF00153 279 - 368 9.4e-21 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014529)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56450
fragaria_vesca FvH4_2g31710
malus_domestica MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica Prupe.1G410600_v2.0.a1
pyrus_communis pycom08g05240 pycom15g05450
rosa_chinensis RchiOBHm_Chr6g0311111
rosa_laevigata RLG00000010434
rosa_multiflora Rmu_sc0008967.1_g000005
rosa_roxburghii Rroxscaffold_7G00158010
rosa_rugosa Rorug06G0385600
rosa_samantha Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana Rw6G043520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 590, 1117
AarI CACCTGC 1 cut(s) 550
Acc36I ACCTGC 1 cut(s) 550
AccB7I CCANNNNNTGG 1 cut(s) 679
AccBSI CCGCTC 1 cut(s) 507
AciI CCGC 4 cut(s) 53, 98, 507, 619
AclI AACGTT 1 cut(s) 850
AclWI GGATC 2 cut(s) 489, 674
AcoI YGGCCR 2 cut(s) 90, 180
AcsI RAATTY 2 cut(s) 206, 811
AfaI GTAC 4 cut(s) 238, 959, 967, 1051
AfiI CCNNNNNNNGG 2 cut(s) 189, 679
AflIII ACRYGT 1 cut(s) 495
AgsI TTSAA 2 cut(s) 211, 816
AjnI CCWGG 1 cut(s) 678
AleI CACNNNNGTG 2 cut(s) 125, 422
AluBI AGCT 5 cut(s) 151, 314, 513, 829, 1061
AluI AGCT 5 cut(s) 151, 314, 513, 829, 1061
Alw21I GWGCWC 2 cut(s) 120, 541
Alw44I GTGCAC 2 cut(s) 116, 537
AlwI GGATC 2 cut(s) 489, 674
Ama87I CYCGRG 1 cut(s) 708
AoxI GGCC 4 cut(s) 19, 50, 90, 180
ApaLI GTGCAC 2 cut(s) 116, 537
ApeKI GCWGC 8 cut(s) 157, 282, 414, 563, 566, 626, 1058, 1061
ApoI RAATTY 2 cut(s) 206, 811
AspLEI GCGC 1 cut(s) 1058
AspS9I GGNCC 3 cut(s) 20, 50, 201
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 112, 383, 749
AvaI CYCGRG 1 cut(s) 708
AvaII GGWCC 1 cut(s) 201
BaeGI GKGCMC 2 cut(s) 120, 541
BalI TGGCCA 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 719
Bbv12I GWGCWC 2 cut(s) 120, 541
BbvI GCAGC 8 cut(s) 144, 294, 426, 550, 553, 613, 1048, 1070
BccI CCATC 8 cut(s) 5, 82, 97, 362, 512, 695, 742, 1073
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 680
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 1 cut(s) 94
BfmI CTRYAG 3 cut(s) 158, 309, 740
BfuAI ACCTGC 1 cut(s) 550
BfuI GTATCC 1 cut(s) 901
BglII AGATCT 1 cut(s) 798
BisI GCNGC 9 cut(s) 53, 158, 283, 415, 564, 567, 627, 1059, 1062
BlsI GCNGC 9 cut(s) 54, 159, 284, 416, 565, 568, 628, 1060, 1063
BmcAI AGTACT 1 cut(s) 1051
Bme1390I CCNGG 2 cut(s) 94, 680
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 708
BmgT120I GGNCC 3 cut(s) 20, 50, 201
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 94, 680
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 4 cut(s) 264, 396, 422, 921
BmuI ACTGGG 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 719
BpmI CTGGAG 1 cut(s) 851
Bpu10I CCTNAGC 2 cut(s) 477, 864
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 93, 760
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 679
Bse1I ACTGG 4 cut(s) 347, 839, 909, 1057
Bse3DI GCAATG 3 cut(s) 283, 357, 552
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 2 cut(s) 93, 760
BseGI GGATG 4 cut(s) 437, 706, 753, 930
BseLI CCNNNNNNNGG 2 cut(s) 189, 679
BseMI GCAATG 3 cut(s) 283, 357, 552
BseMII CTCAG 2 cut(s) 45, 878
BseNI ACTGG 4 cut(s) 347, 839, 909, 1057
BseRI GAGGAG 1 cut(s) 934
BseSI GKGCMC 2 cut(s) 120, 541
BseXI GCAGC 8 cut(s) 144, 294, 426, 550, 553, 613, 1048, 1070
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 1047
BshFI GGCC 4 cut(s) 21, 52, 92, 182
BsiHKAI GWGCWC 2 cut(s) 120, 541
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 1 cut(s) 93
BsiWI CGTACG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 718
BslI CCNNNNNNNGG 2 cut(s) 189, 679
BsmFI GGGAC 1 cut(s) 718
BsnI GGCC 4 cut(s) 21, 52, 92, 182
BsoBI CYCGRG 1 cut(s) 708
Bsp1286I GDGCHC 2 cut(s) 120, 541
Bsp1407I TGTACA 1 cut(s) 957
Bsp143I GATC 4 cut(s) 82, 481, 666, 798
BspACI CCGC 4 cut(s) 53, 98, 507, 619
BspANI GGCC 4 cut(s) 21, 52, 92, 182
BspCNI CTCAG 2 cut(s) 44, 877
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 2 cut(s) 489, 674
BsrBI CCGCTC 1 cut(s) 507
BsrDI GCAATG 3 cut(s) 283, 357, 552
BsrGI TGTACA 1 cut(s) 957
BsrI ACTGG 4 cut(s) 347, 839, 909, 1057
BssECI CCNNGG 2 cut(s) 93, 760
BssMI GATC 4 cut(s) 82, 481, 666, 798
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 4 cut(s) 80, 241, 913, 962
BstAUI TGTACA 1 cut(s) 957
BstDEI CTNAG 4 cut(s) 31, 477, 514, 864
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 4 cut(s) 437, 706, 753, 930
BstHHI GCGC 1 cut(s) 1058
BstKTI GATC 4 cut(s) 85, 484, 669, 801
BstMBI GATC 4 cut(s) 82, 481, 666, 798
BstMWI GCNNNNNNNGC 6 cut(s) 49, 61, 157, 282, 563, 835
BstNI CCWGG 1 cut(s) 680
BstNSI RCATGY 2 cut(s) 220, 499
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 92, 678
BstSFI CTRYAG 3 cut(s) 158, 309, 740
BstSLI GKGCMC 2 cut(s) 120, 541
BstV1I GCAGC 8 cut(s) 144, 294, 426, 550, 553, 613, 1048, 1070
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 3 cut(s) 481, 666, 798
BstXI CCANNNNNNTGG 1 cut(s) 701
BstYI RGATCY 3 cut(s) 481, 666, 798
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 4 cut(s) 21, 52, 92, 182
BtsCI GGATG 4 cut(s) 437, 706, 753, 930
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 5 cut(s) 292, 340, 846, 902, 967
BveI ACCTGC 1 cut(s) 550
CfoI GCGC 1 cut(s) 1058
Cfr13I GGNCC 3 cut(s) 20, 50, 201
Csp6I GTAC 4 cut(s) 237, 958, 966, 1050
CviAII CATG 5 cut(s) 217, 403, 496, 1039, 1099
CviQI GTAC 4 cut(s) 237, 958, 966, 1050
DdeI CTNAG 4 cut(s) 31, 477, 514, 864
DpnI GATC 4 cut(s) 84, 483, 668, 800
DpnII GATC 4 cut(s) 82, 481, 666, 798
EaeI YGGCCR 2 cut(s) 90, 180
Eco32I GATATC 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 708
Eco91I GGTNACC 1 cut(s) 682
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 678
EcoRV GATATC 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 1104
FaeI CATG 5 cut(s) 220, 406, 499, 1042, 1102
FaqI GGGAC 1 cut(s) 718
FatI CATG 5 cut(s) 216, 402, 495, 1038, 1098
FauI CCCGC 1 cut(s) 626
Fnu4HI GCNGC 9 cut(s) 53, 158, 283, 415, 564, 567, 627, 1059, 1062
FokI GGATG 4 cut(s) 444, 713, 760, 937
Fsp4HI GCNGC 9 cut(s) 53, 158, 283, 415, 564, 567, 627, 1059, 1062
GlaI GCGC 1 cut(s) 1057
GluI GCNGC 9 cut(s) 53, 158, 283, 415, 564, 567, 627, 1059, 1062
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 4 cut(s) 21, 52, 92, 182
HapII CCGG 1 cut(s) 93
HhaI GCGC 1 cut(s) 1058
Hin1II CATG 5 cut(s) 220, 406, 499, 1042, 1102
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 1 cut(s) 706
HpaII CCGG 1 cut(s) 93
HphI GGTGA 3 cut(s) 112, 383, 749
Hpy166II GTNNAC 3 cut(s) 118, 539, 757
Hpy188I TCNGA 4 cut(s) 87, 135, 808, 918
Hpy188III TCNNGA 3 cut(s) 874, 971, 1090
Hpy8I GTNNAC 3 cut(s) 118, 539, 757
Hpy99I CGWCG 1 cut(s) 1085
HpyAV CCTTC 5 cut(s) 192, 245, 315, 691, 995
HpyCH4III ACNGT 4 cut(s) 80, 241, 913, 962
HpyCH4IV ACGT 2 cut(s) 823, 850
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 61, 157, 282, 563, 835
HpyF3I CTNAG 4 cut(s) 31, 477, 514, 864
HpySE526I ACGT 2 cut(s) 823, 850
Hsp92II CATG 5 cut(s) 220, 406, 499, 1042, 1102
HspAI GCGC 1 cut(s) 1056
Kzo9I GATC 4 cut(s) 82, 481, 666, 798
LmnI GCTCC 2 cut(s) 136, 504
Lsp1109I GCAGC 8 cut(s) 144, 294, 426, 550, 553, 613, 1048, 1070
LweI GCATC 4 cut(s) 264, 396, 422, 921
MaeII ACGT 2 cut(s) 823, 850
MaeIII GTNAC 3 cut(s) 382, 682, 871
MalI GATC 4 cut(s) 84, 483, 668, 800
MbiI CCGCTC 1 cut(s) 507
MboI GATC 4 cut(s) 82, 481, 666, 798
MboII GAAGA 8 cut(s) 20, 260, 284, 472, 651, 719, 994, 997
MflI RGATCY 3 cut(s) 481, 666, 798
MhlI GDGCHC 2 cut(s) 120, 541
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 6 cut(s) 206, 319, 464, 547, 656, 811
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 201
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 1104
MscI TGGCCA 1 cut(s) 182
MseI TTAA 1 cut(s) 500
MslI CAYNNNNRTG 2 cut(s) 125, 422
Msp20I TGGCCA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 1061
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 2 cut(s) 94, 680
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 6 cut(s) 49, 61, 157, 282, 563, 835
NciI CCSGG 1 cut(s) 94
NdeII GATC 4 cut(s) 82, 481, 666, 798
NlaIII CATG 5 cut(s) 220, 406, 499, 1042, 1102
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 2 cut(s) 382, 871
NsiI ATGCAT 1 cut(s) 1104
NspI RCATGY 2 cut(s) 220, 499
OliI CACNNNNGTG 2 cut(s) 125, 422
PaeR7I CTCGAG 1 cut(s) 708
PaqCI CACCTGC 1 cut(s) 550
PciI ACATGT 1 cut(s) 495
Pfl23II CGTACG 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 1085
PflMI CCANNNNNTGG 1 cut(s) 679
PkrI GCNGC 9 cut(s) 54, 159, 284, 416, 565, 568, 628, 1060, 1063
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PscI ACATGT 1 cut(s) 495
PsiI TTATAA 2 cut(s) 590, 1117
Psp1406I AACGTT 1 cut(s) 850
Psp6I CCWGG 1 cut(s) 678
PspEI GGTNACC 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 678
PspLI CGTACG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 3 cut(s) 20, 50, 201
PspXI VCTCGAGB 1 cut(s) 708
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 3 cut(s) 481, 666, 798
PsyI GACNNNGTC 1 cut(s) 1085
PvuII CAGCTG 1 cut(s) 1061
RsaI GTAC 4 cut(s) 238, 959, 967, 1051
RsaNI GTAC 4 cut(s) 237, 958, 966, 1050
RseI CAYNNNNRTG 2 cut(s) 125, 422
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 9 cut(s) 53, 158, 283, 415, 564, 567, 627, 1059, 1062
Sau3AI GATC 4 cut(s) 82, 481, 666, 798
Sau96I GGNCC 3 cut(s) 20, 50, 201
ScaI AGTACT 1 cut(s) 1051
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 2 cut(s) 94, 680
SduI GDGCHC 2 cut(s) 120, 541
SfaNI GCATC 4 cut(s) 264, 396, 422, 921
SfcI CTRYAG 3 cut(s) 158, 309, 740
Sfr274I CTCGAG 1 cut(s) 708
SinI GGWCC 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 708
SmiMI CAYNNNNRTG 2 cut(s) 125, 422
SmlI CTYRAG 2 cut(s) 329, 708
SmoI CTYRAG 2 cut(s) 329, 708
Sse9I AATT 6 cut(s) 206, 319, 464, 547, 656, 811
SsiI CCGC 4 cut(s) 53, 98, 507, 619
StyD4I CCNGG 2 cut(s) 92, 678
TaaI ACNGT 4 cut(s) 80, 241, 913, 962
TaiI ACGT 2 cut(s) 826, 853
TaqI TCGA 3 cut(s) 38, 661, 709
TasI AATT 6 cut(s) 206, 319, 464, 547, 656, 811
TatI WGTACW 2 cut(s) 957, 1049
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TscAI CASTG 5 cut(s) 292, 347, 846, 909, 967
TseFI GTSAC 2 cut(s) 382, 871
TseI GCWGC 8 cut(s) 157, 282, 414, 563, 566, 626, 1058, 1061
Tsp45I GTSAC 2 cut(s) 382, 871
TspDTI ATGAA 5 cut(s) 541, 660, 806, 1002, 1087
TspRI CASTG 5 cut(s) 292, 347, 846, 909, 967
Tth111I GACNNNGTC 1 cut(s) 1085
Van91I CCANNNNNTGG 1 cut(s) 679
VneI GTGCAC 2 cut(s) 116, 537
VpaK11BI GGWCC 1 cut(s) 201
XapI RAATTY 2 cut(s) 206, 811
XceI RCATGY 2 cut(s) 220, 499
XhoI CTCGAG 1 cut(s) 708
ZrmI AGTACT 1 cut(s) 1051
Zsp2I ATGCAT 1 cut(s) 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.