Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Reverse (-)

3882463 .. 3886258

Gene Structure 3796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1057900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTATGATGTATCCAACCTCCAAAGCCCTCGTCGATACTTCGGAAGAGATAGGGAGAGGAGGGGTTTCCCGCAGAGAATGAGCAAGGATGACGACGACCCAGAAGCGAAAGCGTCGAAGTCACAGCCGCCGGATTGGCTGACCAACTTCCACCGTGATCTGATGGCCGGGGCAGTGATGGGTAGCGTCGTGCACACGATTGTGGCCCCAATCGAGAGAGCCAAGCTTTTGCTGCAGACCCAGGAGAGCAACCTGGCCATTCTCGGCGGTGGAAGGACGAAGTTCAAGGGGATGGTGGATTGCATCGCCCGGACGGTCAGGGAAGAAGGCATCCTGTCTCTTTGGAGAGGCAACGGCAGCAGCGTCCTCCGATACTACCCTTCGGTCGCTCTCAATTTCTCCCTCAAGGACCTTTATAGGAACGTATTAAGAAGTGGACACTCTCAAGATGGTCATTTTTTGGCTGGTCCATCTGCAAATTTCATGGCTGGAGCTGCTGCTGGTTGTACAACATTGATCATAATATACCCGCTTGATATTGCACATACCCGCCTGGCTGCTGACATTGGAAGAACTGAAATCCGTCAATTTCGAGGAATATACCATTTCTTGTCTACCATTCGCCAAAAGGACGGGATTCAAGGGGTTTACAGAGGGCTTCCAGCCTCTTTACAGGGAATGGTCATTCACCGGGGGCTTTACTTTGGAGGCTTTGATACGATGAAGGAAATTTTATCAGAAGACTGTCAACGTGATTTGCCATTGTGGCAGCGTTGGGTAGTGGCTCAGGCAGTCACAACATCTGCTGGGTTGTTGTCATATCCACTTGACACAGTTCGGAGGCGGATGATGATGCAGTCTGGACTGGAACAGCGGATGTATGATAACACTTTGGACTGCTGGAGGAAGATATATAGGAGAGAAGGGGTGACTTCATTTTATCGTGGTGCAGTTTCGAATGTGTTTAGGAGTACCGGCGCTGCTGCCATCTTGGTTTTGTACGACGAGGTCAAGAAGTTCATGAATTGGGGTGGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

347

Amino Acids

39.05

Weight (kDa)

9.69

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	49 - 144	1.2e-20	Mitochondrial carrier protein
Mito_carr	PF00153	157 - 247	1.1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	253 - 342	3e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	614
AciI	CCGC	7 cut(s)	71, 128, 267, 530, 550, 844, 874
AcoI	YGGCCR	2 cut(s)	165, 255
AcsI	RAATTY	2 cut(s)	478, 729
AfaI	GTAC	3 cut(s)	508, 973, 1001
AgsI	TTSAA	2 cut(s)	286, 641
AjnI	CCWGG	3 cut(s)	240, 252, 552
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	2 cut(s)	226, 494
AluI	AGCT	2 cut(s)	226, 494
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	342
Alw44I	GTGCAC	1 cut(s)	191
AoxI	GGCC	3 cut(s)	165, 204, 255
ApaLI	GTGCAC	1 cut(s)	191
ApeKI	GCWGC	9 cut(s)	232, 357, 360, 494, 497, 557, 769, 980, 983
ApoI	RAATTY	2 cut(s)	478, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AspLEI	GCGC	1 cut(s)	980
AspS9I	GGNCC	3 cut(s)	205, 409, 467
AsuC2I	CCSGG	3 cut(s)	169, 310, 692
AsuHPI	GGTGA	2 cut(s)	680, 940
AsuII	TTCGAA	1 cut(s)	956
AvaII	GGWCC	2 cut(s)	409, 467
BaeGI	GKGCMC	1 cut(s)	195
BalI	TGGCCA	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	9 cut(s)	219, 369, 372, 481, 484, 544, 781, 967, 970
BccI	CCATC	6 cut(s)	157, 172, 286, 443, 478, 995
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	3 cut(s)	242, 254, 554
BciVI	GTATCC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	516
BcnI	CCSGG	3 cut(s)	169, 310, 692
BcoDI	GTCTC	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	981
BfuI	GTATCC	1 cut(s)	22
BglI	GCCNNNNNGGC	2 cut(s)	136, 766
Bme1390I	CCNGG	6 cut(s)	169, 242, 254, 310, 554, 692
Bme18I	GGWCC	2 cut(s)	409, 467
BmgT120I	GGNCC	3 cut(s)	205, 409, 467
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	6 cut(s)	169, 242, 254, 310, 554, 692
BmsI	GCATC	3 cut(s)	312, 339, 843
BpiI	GAAGAC	1 cut(s)	747
BpmI	CTGGAG	2 cut(s)	510, 922
Bpu10I	CCTNAGC	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	956
BpuEI	CTTGAG	2 cut(s)	389, 429
BpuMI	CCSGG	3 cut(s)	169, 310, 692
BsaJI	CCNNGG	3 cut(s)	168, 240, 691
Bse118I	RCCGGY	1 cut(s)	974
Bse1I	ACTGG	1 cut(s)	870
BseBI	CCWGG	3 cut(s)	242, 254, 554
BseDI	CCNNGG	3 cut(s)	168, 240, 691
BseGI	GGATG	5 cut(s)	94, 297, 330, 852, 882
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	1 cut(s)	870
BseRI	GAGGAG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	9 cut(s)	219, 369, 372, 481, 484, 544, 781, 967, 970
BseYI	CCCAGC	1 cut(s)	806
BsgI	GTGCAG	1 cut(s)	969
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	167, 206, 257
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	5 cut(s)	131, 168, 310, 691, 975
BsmAI	GTCTC	1 cut(s)	342
BsnI	GGCC	3 cut(s)	167, 206, 257
Bsp119I	TTCGAA	1 cut(s)	956
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	506
Bsp143I	GATC	2 cut(s)	157, 516
BspACI	CCGC	7 cut(s)	71, 128, 267, 530, 550, 844, 874
BspANI	GGCC	3 cut(s)	167, 206, 257
BspCNI	CTCAG	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	1020
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	1 cut(s)	237
BspT104I	TTCGAA	1 cut(s)	956
BsrFI	RCCGGY	1 cut(s)	974
BsrGI	TGTACA	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	870
BssAI	RCCGGY	1 cut(s)	974
BssECI	CCNNGG	3 cut(s)	168, 240, 691
BssMI	GATC	2 cut(s)	157, 516
Bst2UI	CCWGG	3 cut(s)	242, 254, 554
Bst4CI	ACNGT	4 cut(s)	155, 316, 746, 835
Bst6I	CTCTTC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	506
BstBI	TTCGAA	1 cut(s)	956
BstDEI	CTNAG	1 cut(s)	786
BstF5I	GGATG	5 cut(s)	94, 297, 330, 852, 882
BstH2I	RGCGCY	1 cut(s)	981
BstHHI	GCGC	1 cut(s)	980
BstKTI	GATC	2 cut(s)	160, 519
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	2 cut(s)	157, 516
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	5 cut(s)	136, 232, 357, 494, 766
BstNI	CCWGG	3 cut(s)	242, 254, 554
BstSCI	CCNGG	6 cut(s)	167, 240, 252, 308, 552, 690
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	9 cut(s)	219, 369, 372, 481, 484, 544, 781, 967, 970
BstV2I	GAAGAC	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	167, 206, 257
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	5 cut(s)	94, 297, 330, 852, 882
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	1 cut(s)	980
Cfr10I	RCCGGY	1 cut(s)	974
Cfr13I	GGNCC	3 cut(s)	205, 409, 467
CseI	GACGC	3 cut(s)	102, 175, 352
Csp6I	GTAC	3 cut(s)	507, 972, 1000
CviAII	CATG	2 cut(s)	484, 1021
CviQI	GTAC	3 cut(s)	507, 972, 1000
DdeI	CTNAG	1 cut(s)	786
DpnI	GATC	2 cut(s)	159, 518
DpnII	GATC	2 cut(s)	157, 516
EaeI	YGGCCR	2 cut(s)	165, 255
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	859
Eco47I	GGWCC	2 cut(s)	409, 467
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	3 cut(s)	240, 252, 552
FaeI	CATG	2 cut(s)	487, 1024
FatI	CATG	2 cut(s)	483, 1020
FauI	CCCGC	3 cut(s)	78, 537, 557
FbaI	TGATCA	1 cut(s)	516
FblI	GTMKAC	1 cut(s)	614
FokI	GGATG	5 cut(s)	101, 304, 317, 859, 889
GlaI	GCGC	1 cut(s)	979
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	2 cut(s)	510, 922
HaeII	RGCGCY	1 cut(s)	981
HaeIII	GGCC	3 cut(s)	167, 206, 257
HapII	CCGG	5 cut(s)	131, 168, 310, 691, 975
HgaI	GACGC	3 cut(s)	102, 175, 352
HhaI	GCGC	1 cut(s)	980
Hin1II	CATG	2 cut(s)	487, 1024
Hin6I	GCGC	1 cut(s)	978
HinP1I	GCGC	1 cut(s)	978
HincII	GTYRAC	1 cut(s)	749
HindII	GTYRAC	1 cut(s)	749
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	1 cut(s)	637
HpaII	CCGG	5 cut(s)	131, 168, 310, 691, 975
HphI	GGTGA	2 cut(s)	680, 940
Hpy166II	GTNNAC	5 cut(s)	193, 437, 615, 649, 749
Hpy188I	TCNGA	5 cut(s)	44, 162, 371, 739, 840
Hpy188III	TCNNGA	5 cut(s)	214, 446, 861, 1012, 1021
Hpy8I	GTNNAC	5 cut(s)	193, 437, 615, 649, 749
Hpy99I	CGWCG	5 cut(s)	36, 98, 118, 191, 1007
HpyAV	CCTTC	5 cut(s)	267, 320, 390, 718, 917
HpyCH4III	ACNGT	4 cut(s)	155, 316, 746, 835
HpyCH4IV	ACGT	2 cut(s)	423, 751
HpyCH4V	TGCA	7 cut(s)	193, 235, 303, 476, 542, 856, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	136, 232, 357, 494, 766
HpyF3I	CTNAG	1 cut(s)	786
HpySE526I	ACGT	2 cut(s)	423, 751
Hsp92II	CATG	2 cut(s)	487, 1024
HspAI	GCGC	1 cut(s)	978
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	157, 516
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	9 cut(s)	219, 369, 372, 481, 484, 544, 781, 967, 970
LweI	GCATC	3 cut(s)	312, 339, 843
MaeII	ACGT	2 cut(s)	423, 751
MaeIII	GTNAC	3 cut(s)	120, 793, 928
MalI	GATC	2 cut(s)	159, 518
MboI	GATC	2 cut(s)	157, 516
MboII	GAAGA	5 cut(s)	57, 335, 582, 752, 919
MhlI	GDGCHC	1 cut(s)	195
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	5 cut(s)	394, 478, 587, 729, 1024
MluNI	TGGCCA	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	39
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	874
MspI	CCGG	5 cut(s)	131, 168, 310, 691, 975
MspR9I	CCNGG	6 cut(s)	169, 242, 254, 310, 554, 692
MvaI	CCWGG	3 cut(s)	242, 254, 554
MwoI	GCNNNNNNNGC	5 cut(s)	136, 232, 357, 494, 766
NciI	CCSGG	3 cut(s)	169, 310, 692
NdeII	GATC	2 cut(s)	157, 516
NlaIII	CATG	2 cut(s)	487, 1024
NlaIV	GGNNCC	1 cut(s)	207
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	3 cut(s)	120, 793, 928
NspV	TTCGAA	1 cut(s)	956
OliI	CACNNNNGTG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	1020
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	637
PflFI	GACNNNGTC	1 cut(s)	1007
PpuMI	RGGWCCY	1 cut(s)	409
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	3 cut(s)	240, 252, 552
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	3 cut(s)	240, 252, 552
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	205, 409, 467
PspPPI	RGGWCCY	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	1007
RsaI	GTAC	3 cut(s)	508, 973, 1001
RsaNI	GTAC	3 cut(s)	507, 972, 1000
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	428
Sau3AI	GATC	2 cut(s)	157, 516
Sau96I	GGNCC	3 cut(s)	205, 409, 467
ScrFI	CCNGG	6 cut(s)	169, 242, 254, 310, 554, 692
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	8 cut(s)	21, 228, 255, 414, 426, 496, 754, 1011
SfaNI	GCATC	3 cut(s)	312, 339, 843
SfcI	CTRYAG	1 cut(s)	233
SfuI	TTCGAA	1 cut(s)	956
SinI	GGWCC	2 cut(s)	409, 467
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	404, 444
SmoI	CTYRAG	2 cut(s)	404, 444
Sse9I	AATT	5 cut(s)	394, 478, 587, 729, 1024
SsiI	CCGC	7 cut(s)	71, 128, 267, 530, 550, 844, 874
StyD4I	CCNGG	6 cut(s)	167, 240, 252, 308, 552, 690
TaaI	ACNGT	4 cut(s)	155, 316, 746, 835
TaiI	ACGT	2 cut(s)	426, 754
TaqI	TCGA	5 cut(s)	34, 116, 213, 592, 956
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	394, 478, 587, 729, 1024
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	3 cut(s)	120, 793, 928
TseI	GCWGC	9 cut(s)	232, 357, 360, 494, 497, 557, 769, 980, 983
Tsp45I	GTSAC	3 cut(s)	120, 793, 928
TspDTI	ATGAA	5 cut(s)	472, 737, 924, 1009, 1037
TspGWI	ACGGA	1 cut(s)	572
TspRI	CASTG	1 cut(s)	180
Tth111I	GACNNNGTC	1 cut(s)	1007
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	409, 467
XapI	RAATTY	2 cut(s)	478, 729
XmiI	GTMKAC	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.