Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Reverse (-)

35884191 .. 35887658

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G410600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAGCAAGGATGACGACGACCCAAAAAGCAGAGGGTCGATATCAAGGCCGCACGATTGGCTGAACAACTTCCAGCGCGATCTCATGGCCGGGGCGGTGATGGGCGGGGTTGTGCACACGATCGTGGCCCCAATCGAGAGAGCCAAGCTCTTGTTGCAGACCCAAGAGAGCAACTTGGCCATTCTTGGGGGTGGACGTACGAGATTCAAGGGCATGGTCGATTGTATCGTCCGTACGGTTCGAGAAGAAGGCATTCTCTCTCTTTGGAGAGGCAATGGCAGCAGTGTTCTTCGCTACTACCCTTCCGTCGCTCTCAATTTTTCCCTCAAGGATCTTTATAGAAATGTGTTAAGAAGTGGACACTCTCACGATGGTCATTTTTTGTCCGGTCCATCTGCTAACTTCATTGCTGGAGCTGCTGCTGGCTGTACAACATTGATTATAATATACCCACTTGATATTTCACATACCCGCCTGGCTGCTGACATTGGAAGAACTGAAGTCCGACAATTTCGAGGCATCTACCATTTCTTGTCTACCATTCGCCAAAAGGATGGGATTCGGGGGGTATACAGAGGGCTTCCAGCCTCTTTACAGGGGATGGTCATCCACCGTGGTCTTTACTTTGGAGGCTTTGATACAATAAAAGAGATTTTGTCAGAAAAGTCTGAACTTGAGTTGCCATTGTGGAAGCGTTGGGCGGTGGCTCAGGCAGTCACAACATCTGCTGGGTTGTTGTCATATCCACTGGATACAGTTCGGAGGCGGATGATGATGCAGTCTGGCTTGGAACAGAGGATGTACCATAACACATTGGACTGCTGGAGGAAGATATATAGAACAGAAGGGGTGACTTCATTTTACCGCGGGGCAGTTTCAAACATGTTTCGGAGTACGGGTGCTGCTGCCATCTTGGTTTTGTACGACGAGGTCAAGAAGTTCATGAATTGGGGTGGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

321

Amino Acids

35.85

Weight (kDa)

9.8

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
AccI	GTMKAC	2 cut(s)	536, 570
AccII	CGCG	2 cut(s)	78, 867
AciI	CCGC	8 cut(s)	50, 95, 105, 472, 701, 766, 865, 867
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	2 cut(s)	87, 177
AcuI	CTGAAG	1 cut(s)	519
AfaI	GTAC	6 cut(s)	199, 235, 430, 803, 895, 923
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	2 cut(s)	208, 879
AjnI	CCWGG	1 cut(s)	474
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	2 cut(s)	148, 416
AluI	AGCT	2 cut(s)	148, 416
Alw21I	GWGCWC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	4 cut(s)	47, 87, 126, 177
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	6 cut(s)	279, 416, 419, 479, 902, 905
Asp700I	GAANNNNTTC	2 cut(s)	68, 252
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	127, 389
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	109, 862
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	6 cut(s)	291, 403, 406, 466, 889, 892
BccI	CCATC	6 cut(s)	94, 365, 400, 548, 595, 917
BciT130I	CCWGG	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	7 cut(s)	50, 280, 417, 420, 480, 903, 906
BlsI	GCNGC	7 cut(s)	51, 281, 418, 421, 481, 904, 907
Bme1390I	CCNGG	2 cut(s)	91, 476
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	127, 389
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	91, 476
BmsI	GCATC	2 cut(s)	528, 765
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	2 cut(s)	432, 844
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	2 cut(s)	311, 695
BpuMI	CCSGG	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	605
BsaJI	CCNNGG	3 cut(s)	90, 613, 865
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	883, 913
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	753
Bse3DI	GCAATG	2 cut(s)	280, 405
Bse8I	GATNNNNATC	1 cut(s)	605
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	3 cut(s)	90, 613, 865
BseGI	GGATG	6 cut(s)	16, 559, 606, 606, 774, 804
BseJI	GATNNNNATC	1 cut(s)	605
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	2 cut(s)	280, 405
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	1 cut(s)	753
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	6 cut(s)	291, 403, 406, 466, 889, 892
BseYI	CCCAGC	1 cut(s)	728
Bsh1236I	CGCG	2 cut(s)	78, 867
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	49, 89, 128, 179
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	90, 387
BsiWI	CGTACG	2 cut(s)	197, 233
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	4 cut(s)	49, 89, 128, 179
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	428
Bsp143I	GATC	3 cut(s)	79, 120, 331
BspACI	CCGC	8 cut(s)	50, 95, 105, 472, 701, 766, 865, 867
BspANI	GGCC	4 cut(s)	49, 89, 128, 179
BspCNI	CTCAG	1 cut(s)	721
BspFNI	CGCG	2 cut(s)	78, 867
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	339
BsrDI	GCAATG	2 cut(s)	280, 405
BsrGI	TGTACA	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	753
BssECI	CCNNGG	3 cut(s)	90, 613, 865
BssMI	GATC	3 cut(s)	79, 120, 331
BssNAI	GTATAC	1 cut(s)	571
Bst1107I	GTATAC	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	3 cut(s)	238, 614, 757
BstAUI	TGTACA	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	708
BstDSI	CCRYGG	2 cut(s)	613, 865
BstF5I	GGATG	6 cut(s)	16, 559, 606, 606, 774, 804
BstFNI	CGCG	2 cut(s)	78, 867
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	3 cut(s)	82, 123, 334
BstMBI	GATC	3 cut(s)	79, 120, 331
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 154, 279, 416
BstNI	CCWGG	1 cut(s)	476
BstNSI	RCATGY	1 cut(s)	886
BstSCI	CCNGG	2 cut(s)	89, 474
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	2 cut(s)	78, 867
BstV1I	GCAGC	6 cut(s)	291, 403, 406, 466, 889, 892
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	331
BstZ17I	GTATAC	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	4 cut(s)	49, 89, 128, 179
BtgI	CCRYGG	2 cut(s)	613, 865
BtsCI	GGATG	6 cut(s)	16, 559, 606, 606, 774, 804
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	289, 746
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	127, 389
Cfr42I	CCGCGG	1 cut(s)	868
Csp6I	GTAC	6 cut(s)	198, 234, 429, 802, 894, 922
CviAII	CATG	4 cut(s)	85, 214, 883, 943
CviQI	GTAC	6 cut(s)	198, 234, 429, 802, 894, 922
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	3 cut(s)	81, 122, 333
DpnII	GATC	3 cut(s)	79, 120, 331
EaeI	YGGCCR	2 cut(s)	87, 177
EciI	GGCGGA	1 cut(s)	781
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	42
FaeI	CATG	4 cut(s)	88, 217, 886, 946
FatI	CATG	4 cut(s)	84, 213, 882, 942
FauI	CCCGC	3 cut(s)	98, 479, 860
FblI	GTMKAC	2 cut(s)	536, 570
Fnu4HI	GCNGC	7 cut(s)	50, 280, 417, 420, 480, 903, 906
FokI	GGATG	6 cut(s)	23, 566, 593, 613, 781, 811
Fsp4HI	GCNGC	7 cut(s)	50, 280, 417, 420, 480, 903, 906
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	7 cut(s)	50, 280, 417, 420, 480, 903, 906
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	2 cut(s)	432, 844
HaeIII	GGCC	4 cut(s)	49, 89, 128, 179
HapII	CCGG	2 cut(s)	90, 387
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	88, 217, 886, 946
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	204, 559
HpaII	CCGG	2 cut(s)	90, 387
HphI	GGTGA	2 cut(s)	109, 862
Hpy166II	GTNNAC	5 cut(s)	115, 194, 359, 537, 571
Hpy188I	TCNGA	5 cut(s)	506, 661, 670, 762, 891
Hpy188III	TCNNGA	5 cut(s)	136, 242, 368, 934, 943
Hpy8I	GTNNAC	5 cut(s)	115, 194, 359, 537, 571
Hpy99I	CGWCG	3 cut(s)	20, 311, 929
HpyAV	CCTTC	3 cut(s)	242, 312, 839
HpyCH4III	ACNGT	3 cut(s)	238, 614, 757
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	115, 157, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 154, 279, 416
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	88, 217, 886, 946
HspAI	GCGC	1 cut(s)	76
KspI	CCGCGG	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	79, 120, 331
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	6 cut(s)	291, 403, 406, 466, 889, 892
LweI	GCATC	2 cut(s)	528, 765
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	715, 850
MalI	GATC	3 cut(s)	81, 122, 333
MboI	GATC	3 cut(s)	79, 120, 331
MboII	GAAGA	4 cut(s)	257, 281, 504, 841
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	3 cut(s)	316, 509, 946
MluNI	TGGCCA	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	529
Mox20I	TGGCCA	1 cut(s)	179
MroXI	GAANNNNTTC	2 cut(s)	68, 252
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	867
MspI	CCGG	2 cut(s)	90, 387
MspR9I	CCNGG	2 cut(s)	91, 476
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	476
MvnI	CGCG	2 cut(s)	78, 867
MwoI	GCNNNNNNNGC	4 cut(s)	58, 154, 279, 416
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	3 cut(s)	79, 120, 331
NlaIII	CATG	4 cut(s)	88, 217, 886, 946
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	715, 850
NspI	RCATGY	1 cut(s)	886
OliI	CACNNNNGTG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	942
PciI	ACATGT	1 cut(s)	882
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PctI	GAATGC	1 cut(s)	252
PdmI	GAANNNNTTC	2 cut(s)	68, 252
PfeI	GAWTC	2 cut(s)	204, 559
Pfl23II	CGTACG	2 cut(s)	197, 233
PflFI	GACNNNGTC	1 cut(s)	929
PkrI	GCNGC	7 cut(s)	51, 281, 418, 421, 481, 904, 907
Ple19I	CGATCG	1 cut(s)	123
PscI	ACATGT	1 cut(s)	882
PsiI	TTATAA	1 cut(s)	443
Psp6I	CCWGG	1 cut(s)	474
PspFI	CCCAGC	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	474
PspLI	CGTACG	2 cut(s)	197, 233
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	127, 389
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	929
PvuI	CGATCG	1 cut(s)	123
RsaI	GTAC	6 cut(s)	199, 235, 430, 803, 895, 923
RsaNI	GTAC	6 cut(s)	198, 234, 429, 802, 894, 922
RseI	CAYNNNNRTG	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	868
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	7 cut(s)	50, 280, 417, 420, 480, 903, 906
Sau3AI	GATC	3 cut(s)	79, 120, 331
Sau96I	GGNCC	2 cut(s)	127, 389
ScrFI	CCNGG	2 cut(s)	91, 476
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	4 cut(s)	150, 199, 418, 933
SfaNI	GCATC	2 cut(s)	528, 765
Sfr303I	CCGCGG	1 cut(s)	868
SgrBI	CCGCGG	1 cut(s)	868
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	326, 674
SmoI	CTYRAG	2 cut(s)	326, 674
Sse9I	AATT	3 cut(s)	316, 509, 946
SsiI	CCGC	8 cut(s)	50, 95, 105, 472, 701, 766, 865, 867
StyD4I	CCNGG	2 cut(s)	89, 474
TaaI	ACNGT	3 cut(s)	238, 614, 757
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	5 cut(s)	38, 135, 219, 241, 514
TasI	AATT	3 cut(s)	316, 509, 946
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	204, 559
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	289, 753
TseFI	GTSAC	2 cut(s)	715, 850
TseI	GCWGC	6 cut(s)	279, 416, 419, 479, 902, 905
Tsp45I	GTSAC	2 cut(s)	715, 850
TspDTI	ATGAA	4 cut(s)	394, 846, 931, 959
TspGWI	ACGGA	2 cut(s)	221, 295
TspRI	CASTG	2 cut(s)	289, 753
Tth111I	GACNNNGTC	1 cut(s)	929
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	389
XceI	RCATGY	1 cut(s)	886
XmiI	GTMKAC	2 cut(s)	536, 570
XmnI	GAANNNNTTC	2 cut(s)	68, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.