Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Forward (+)

4034845 .. 4037353

Gene Structure 2509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAGCAAAGATGACGACGACCCAGAGGCGAAAGCATCGAAATCACAGCCGCCGGATTGGCTGACAAACTTCCACCGCGATCTGATGGCTGGGGCGGTGATGGGCGGCGTGGTGCACACGATTGTGGCCCCAATTGAGAGGGCCAAGCTTTTGTTGCAGACCCAGGAGAGCAACCTGGCCATTCTCGGCAGTGGACGGACGAAGTTCAAGGGCATGGTCGATTGCATCGCCCGGACGGTCAGGGAAGAAGGCATCCTGTCTCTTTGGAGAGGCAATGGCAGCAGCGTCCTTCGCTACTACCCTTCCGTCGCTCTCAATTTTTCCCTCAAGGATCTTTATAGGAACCTGTTAAGAAGTGGACACTCTCAAGATGGTCATTTTTTGGCTGGTCCGTCTGCCAATTTCATTGCTGGAGCTGCTGCTGGCTGTACAACATTGATAATAATATACCCACTTGATATTGCACATACCCGCCTGGCTGCTGACATTGGAAGAACCGAAGTCCGTCAATTTCGAGGCATATACCATTTCTTGTCTACCATTCGCCAAAAGGACGGGATTAAAGGAGTTTACAGAGGGCTTCCAGCTTCTTTACAGGGAATGGTCATTCACCGGGGACTATACTTTGGAGGTTTTGATACAATGAAGGAAATTTTATCAGAAGATTCTAAACGTGATTTGCCATTGTGGCAGCGTTGGGTAGTGGCTCAGGCAGTCACAACCTCTGCCGGGTTGTTGTCGTATCCACTTGATACAGTTCGGAGGCGGATGATGATGCAGTCTGGATTGGAACAGCGGATGTACGATAACACATTGGACTGCTGGAGGAAGATATATAGGAGAGAAGGAGTGGTTTCATTTTATCGCGGTGCAGTTTCAAACGTGTTTAGGAGTGCCGGCGCTGCTGCCATCTTGGTTTTGTACGACGAAGTCAAGAAGTTCATGAATTGGGGTGGATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

321

Amino Acids

35.71

Weight (kDa)

9.61

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	536
AccII	CGCG	2 cut(s)	78, 867
AciI	CCGC	8 cut(s)	50, 76, 95, 105, 472, 766, 796, 867
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	651
AfaI	GTAC	3 cut(s)	430, 803, 923
AfiI	CCNNNNNNNGG	1 cut(s)	729
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	2 cut(s)	208, 879
AjnI	CCWGG	3 cut(s)	162, 174, 474
AleI	CACNNNNGTG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	148, 416, 587
AluI	AGCT	3 cut(s)	148, 416, 587
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	264
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	339
AoxI	GGCC	3 cut(s)	126, 141, 177
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	8 cut(s)	279, 282, 416, 419, 479, 691, 902, 905
ApoI	RAATTY	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	902
AspS9I	GGNCC	3 cut(s)	127, 141, 389
AsuC2I	CCSGG	3 cut(s)	232, 614, 730
AsuHPI	GGTGA	2 cut(s)	109, 602
AvaII	GGWCC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	8 cut(s)	291, 294, 403, 406, 466, 703, 889, 892
BccI	CCATC	4 cut(s)	79, 94, 365, 917
BciT130I	CCWGG	3 cut(s)	164, 176, 476
BciVI	GTATCC	1 cut(s)	753
BcnI	CCSGG	3 cut(s)	232, 614, 730
BcoDI	GTCTC	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	903
BfuI	GTATCC	1 cut(s)	753
BglI	GCCNNNNNGGC	2 cut(s)	58, 688
Bme1390I	CCNGG	6 cut(s)	164, 176, 232, 476, 614, 730
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	3 cut(s)	127, 141, 389
BmiI	GGNNCC	2 cut(s)	129, 344
BmrFI	CCNGG	6 cut(s)	164, 176, 232, 476, 614, 730
BmsI	GCATC	4 cut(s)	44, 234, 261, 765
BpmI	CTGGAG	2 cut(s)	432, 844
Bpu10I	CCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	2 cut(s)	311, 351
BpuMI	CCSGG	3 cut(s)	232, 614, 730
BsaJI	CCNNGG	2 cut(s)	162, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	729
Bse118I	RCCGGY	1 cut(s)	896
Bse3DI	GCAATG	2 cut(s)	280, 405
BseBI	CCWGG	3 cut(s)	164, 176, 476
BseDI	CCNNGG	2 cut(s)	162, 613
BseGI	GGATG	3 cut(s)	252, 774, 804
BseLI	CCNNNNNNNGG	1 cut(s)	729
BseMI	GCAATG	2 cut(s)	280, 405
BseMII	CTCAG	1 cut(s)	722
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	8 cut(s)	291, 294, 403, 406, 466, 703, 889, 892
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	891
Bsh1236I	CGCG	2 cut(s)	78, 867
BshFI	GGCC	3 cut(s)	128, 143, 179
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	5 cut(s)	53, 232, 613, 729, 897
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	729
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	1 cut(s)	630
BsnI	GGCC	3 cut(s)	128, 143, 179
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	79, 331
BspACI	CCGC	8 cut(s)	50, 76, 95, 105, 472, 766, 796, 867
BspANI	GGCC	3 cut(s)	128, 143, 179
BspCNI	CTCAG	1 cut(s)	721
BspFNI	CGCG	2 cut(s)	78, 867
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	2 cut(s)	129, 344
BspPI	GGATC	1 cut(s)	339
BsrDI	GCAATG	2 cut(s)	280, 405
BsrFI	RCCGGY	1 cut(s)	896
BsrGI	TGTACA	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	2 cut(s)	162, 613
BssMI	GATC	2 cut(s)	79, 331
Bst2UI	CCWGG	3 cut(s)	164, 176, 476
Bst4CI	ACNGT	2 cut(s)	238, 757
BstAUI	TGTACA	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	424, 898
BstDEI	CTNAG	1 cut(s)	708
BstF5I	GGATG	3 cut(s)	252, 774, 804
BstFNI	CGCG	2 cut(s)	78, 867
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	2 cut(s)	82, 334
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	79, 331
BstMWI	GCNNNNNNNGC	7 cut(s)	58, 154, 279, 291, 416, 688, 902
BstNI	CCWGG	3 cut(s)	164, 176, 476
BstSCI	CCNGG	6 cut(s)	162, 174, 230, 474, 612, 728
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	2 cut(s)	78, 867
BstV1I	GCAGC	8 cut(s)	291, 294, 403, 406, 466, 703, 889, 892
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	128, 143, 179
BtgZI	GCGATG	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	252, 774, 804
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	424, 898
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	1 cut(s)	902
Cfr10I	RCCGGY	1 cut(s)	896
Cfr13I	GGNCC	3 cut(s)	127, 141, 389
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	429, 802, 922
CviAII	CATG	2 cut(s)	214, 943
CviQI	GTAC	3 cut(s)	429, 802, 922
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	2 cut(s)	81, 333
DpnII	GATC	2 cut(s)	79, 331
EaeI	YGGCCR	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	781
Eco47I	GGWCC	1 cut(s)	389
EcoRII	CCWGG	3 cut(s)	162, 174, 474
FaeI	CATG	2 cut(s)	217, 946
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	2 cut(s)	213, 942
FauI	CCCGC	1 cut(s)	479
FblI	GTMKAC	1 cut(s)	536
FokI	GGATG	3 cut(s)	239, 781, 811
GlaI	GCGC	1 cut(s)	901
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	2 cut(s)	432, 844
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	3 cut(s)	128, 143, 179
HapII	CCGG	5 cut(s)	53, 232, 613, 729, 897
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	902
Hin1II	CATG	2 cut(s)	217, 946
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	665
HpaII	CCGG	5 cut(s)	53, 232, 613, 729, 897
HphI	GGTGA	2 cut(s)	109, 602
Hpy166II	GTNNAC	5 cut(s)	115, 194, 359, 537, 571
Hpy188I	TCNGA	3 cut(s)	84, 661, 762
Hpy188III	TCNNGA	4 cut(s)	368, 783, 934, 943
Hpy8I	GTNNAC	5 cut(s)	115, 194, 359, 537, 571
Hpy99I	CGWCG	3 cut(s)	20, 311, 929
HpyAV	CCTTC	5 cut(s)	242, 299, 312, 640, 839
HpyCH4III	ACNGT	2 cut(s)	238, 757
HpyCH4IV	ACGT	2 cut(s)	673, 882
HpyCH4V	TGCA	6 cut(s)	115, 157, 225, 464, 778, 872
HpyF10VI	GCNNNNNNNGC	7 cut(s)	58, 154, 279, 291, 416, 688, 902
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	2 cut(s)	673, 882
Hsp92II	CATG	2 cut(s)	217, 946
HspAI	GCGC	1 cut(s)	900
KroI	GCCGGC	1 cut(s)	896
KroNI	GCCGGC	1 cut(s)	898
Kzo9I	GATC	2 cut(s)	79, 331
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	8 cut(s)	291, 294, 403, 406, 466, 703, 889, 892
LweI	GCATC	4 cut(s)	44, 234, 261, 765
MaeII	ACGT	2 cut(s)	673, 882
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	2 cut(s)	81, 333
MboI	GATC	2 cut(s)	79, 331
MboII	GAAGA	4 cut(s)	257, 504, 674, 841
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	6 cut(s)	132, 316, 400, 509, 651, 946
MluNI	TGGCCA	1 cut(s)	179
Mox20I	TGGCCA	1 cut(s)	179
MroNI	GCCGGC	1 cut(s)	896
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	2 cut(s)	350, 561
MslI	CAYNNNNRTG	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	796
MspI	CCGG	5 cut(s)	53, 232, 613, 729, 897
MspR9I	CCNGG	6 cut(s)	164, 176, 232, 476, 614, 730
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	3 cut(s)	164, 176, 476
MvnI	CGCG	2 cut(s)	78, 867
MwoI	GCNNNNNNNGC	7 cut(s)	58, 154, 279, 291, 416, 688, 902
NaeI	GCCGGC	1 cut(s)	898
NciI	CCSGG	3 cut(s)	232, 614, 730
NdeII	GATC	2 cut(s)	79, 331
NgoMIV	GCCGGC	1 cut(s)	896
NlaIII	CATG	2 cut(s)	217, 946
NlaIV	GGNNCC	2 cut(s)	129, 344
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	715
OliI	CACNNNNGTG	1 cut(s)	122
PagI	TCATGA	1 cut(s)	942
PdiI	GCCGGC	1 cut(s)	898
PfeI	GAWTC	1 cut(s)	665
PflFI	GACNNNGTC	1 cut(s)	929
Psp6I	CCWGG	3 cut(s)	162, 174, 474
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	3 cut(s)	162, 174, 474
PspN4I	GGNNCC	2 cut(s)	129, 344
PspPI	GGNCC	3 cut(s)	127, 141, 389
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	929
RsaI	GTAC	3 cut(s)	430, 803, 923
RsaNI	GTAC	3 cut(s)	429, 802, 922
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	350, 561
Sau3AI	GATC	2 cut(s)	79, 331
Sau96I	GGNCC	3 cut(s)	127, 141, 389
ScrFI	CCNGG	6 cut(s)	164, 176, 232, 476, 614, 730
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	9 cut(s)	150, 177, 348, 418, 589, 634, 676, 725, 885
SfaNI	GCATC	4 cut(s)	44, 234, 261, 765
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	2 cut(s)	326, 366
SmoI	CTYRAG	2 cut(s)	326, 366
Sse9I	AATT	6 cut(s)	132, 316, 400, 509, 651, 946
SsiI	CCGC	8 cut(s)	50, 76, 95, 105, 472, 766, 796, 867
StyD4I	CCNGG	6 cut(s)	162, 174, 230, 474, 612, 728
TaaI	ACNGT	2 cut(s)	238, 757
TaiI	ACGT	2 cut(s)	676, 885
TaqI	TCGA	3 cut(s)	38, 219, 514
TasI	AATT	6 cut(s)	132, 316, 400, 509, 651, 946
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	2 cut(s)	52, 108
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	2 cut(s)	350, 561
Tru9I	TTAA	2 cut(s)	350, 561
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	8 cut(s)	279, 282, 416, 419, 479, 691, 902, 905
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	5 cut(s)	394, 659, 846, 931, 959
TspGWI	ACGGA	4 cut(s)	211, 295, 381, 494
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	929
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.