Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Reverse (-)

24259522 .. 24263297

Gene Structure 3776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGCAAAGATGATGATGATGGAGGCACGAAGCAATCACGGGATTGGATGACCAACTTCCACCGTGATCTGATGGCCGGAGCGGTGATGGGTGGGATGGTGCACACGATTGTGGCGCCGATAGAGAGAGCCAAGCTGTTGCTGCAGACCCAAGAGAGCAACATGGCTATTCTTGGGGCAGGAAGGACCAGATTCAAAGGCATGTTGGATTGCATAGCCCGCACGGTTAGAGAAGAAGGCATCTTGTCTTTGTGGAGAGGCAATGGGAGCAGTGTTCTTCGTTATTACCCTTCTGTGGCTCTCAATTTTTCCCTCAAGGATCTTTATAGAAACATGTTAAGGAGCGGAAGCTTAGATGGTCATTTTTTGTCTGGTGCACCTGCCAATTTCATTGCTGGGTCTGCTGCCGGTTGTACAACATTGATTATTATATACCCCCTTGATATTGCACATACCCGCCTTGCTGCTGACATTGGAAGAAATGAAGCCCGTCAATTTCGAGGAATATACCATTTTCTGGTTACCATACGCCAAAAGGATGGGATTCGAGGGATTTACAGAGGTCTTCCTGCCTCGTTACAGGGGATGGTCATTCACCGAGGACTTTATTTTGGTGGCTTTGATACAATGAAAGAGATCTTATCAGAAAATTCGAGGAAATGTGAGTTGGAGTTGCCGCTGTGGAAACGTTGGGTAGTGGCTCAGGCAGTCACGACCTCTGCTGGGTTGTTGTCATATCCACTGGATACAGTTCGGAGGAGGATGATGATGCAGTCTGGCTTGGAACAGCAGATGTACAGTGGTACGCTGGACTGCTGGAAGAAGATTTATAAGAAAGAAGGGGTGGTTTCATTTTATCGTGGTGCAGTTTCTAACATGGTTAGGAGTACTGGCGCAGCTGCCATCTTGGTTTTATACGACGAGGTCAAGAAGTTCATGCATTGGGGGCAGATTATAACACGAGAAACATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

325

Amino Acids

36.31

Weight (kDa)

9.67

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	19 - 115	6.5e-21	Mitochondrial carrier protein
Mito_carr	PF00153	127 - 217	1.4e-19	Mitochondrial carrier protein
Mito_carr	PF00153	225 - 314	6.9e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	831, 956
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	388
AccB1I	GGYRCC	1 cut(s)	115
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccBSI	CCGCTC	2 cut(s)	83, 345
AciI	CCGC	5 cut(s)	83, 220, 345, 457, 677
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	1 cut(s)	327
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	649
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	4 cut(s)	415, 797, 805, 889
AfiI	CCNNNNNNNGG	3 cut(s)	295, 517, 723
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	650, 682
AleI	CACNNNNGTG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	136, 351, 899
AluI	AGCT	3 cut(s)	136, 351, 899
Alw21I	GWGCWC	2 cut(s)	105, 379
Alw44I	GTGCAC	2 cut(s)	101, 375
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	75
ApaLI	GTGCAC	2 cut(s)	101, 375
ApeKI	GCWGC	5 cut(s)	142, 404, 464, 896, 899
ApoI	RAATTY	1 cut(s)	649
AspLEI	GCGC	2 cut(s)	118, 896
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	97, 587
AvaII	GGWCC	1 cut(s)	186
BaeGI	GKGCMC	2 cut(s)	105, 379
BanI	GGYRCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	2 cut(s)	105, 379
BbvI	GCAGC	5 cut(s)	129, 391, 451, 886, 908
BccI	CCATC	8 cut(s)	14, 67, 82, 91, 350, 533, 580, 911
BciVI	GTATCC	1 cut(s)	739
BfmI	CTRYAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	739
BglII	AGATCT	1 cut(s)	636
BisI	GCNGC	6 cut(s)	143, 405, 465, 677, 897, 900
BlsI	GCNGC	6 cut(s)	144, 406, 466, 678, 898, 901
BmcAI	AGTACT	1 cut(s)	889
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	2 cut(s)	249, 759
BpiI	GAAGAC	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 517, 723
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	2 cut(s)	747, 895
Bse3DI	GCAATG	2 cut(s)	268, 390
BseDI	CCNNGG	1 cut(s)	598
BseGI	GGATG	5 cut(s)	54, 102, 544, 591, 768
BseLI	CCNNNNNNNGG	3 cut(s)	295, 517, 723
BseMI	GCAATG	2 cut(s)	268, 390
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	2 cut(s)	747, 895
BseRI	GAGGAG	1 cut(s)	772
BseSI	GKGCMC	2 cut(s)	105, 379
BseXI	GCAGC	5 cut(s)	129, 391, 451, 886, 908
BseYI	CCCAGC	2 cut(s)	395, 722
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	105, 379
BsiSI	CCGG	2 cut(s)	78, 408
BslI	CCNNNNNNNGG	3 cut(s)	295, 517, 723
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	105, 379
Bsp1407I	TGTACA	2 cut(s)	413, 795
Bsp143I	GATC	3 cut(s)	67, 319, 636
BspACI	CCGC	5 cut(s)	83, 220, 345, 457, 677
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	115
BsrBI	CCGCTC	2 cut(s)	83, 345
BsrDI	GCAATG	2 cut(s)	268, 390
BsrFI	RCCGGY	1 cut(s)	407
BsrGI	TGTACA	2 cut(s)	413, 795
BsrI	ACTGG	2 cut(s)	747, 895
BssAI	RCCGGY	1 cut(s)	407
BssECI	CCNNGG	1 cut(s)	598
BssMI	GATC	3 cut(s)	67, 319, 636
BssNI	GRCGYC	1 cut(s)	116
BssSI	CACGAG	1 cut(s)	960
Bst2BI	CACGAG	1 cut(s)	960
Bst4CI	ACNGT	4 cut(s)	65, 226, 751, 800
BstACI	GRCGYC	1 cut(s)	116
BstAUI	TGTACA	2 cut(s)	413, 795
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	352, 702
BstEII	GGTNACC	1 cut(s)	520
BstF5I	GGATG	5 cut(s)	54, 102, 544, 591, 768
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	118, 896
BstKTI	GATC	3 cut(s)	70, 322, 639
BstMBI	GATC	3 cut(s)	67, 319, 636
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 219, 267, 401, 946
BstNSI	RCATGY	2 cut(s)	205, 337
BstPI	GGTNACC	1 cut(s)	520
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	2 cut(s)	105, 379
BstV1I	GCAGC	5 cut(s)	129, 391, 451, 886, 908
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	2 cut(s)	319, 636
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	2 cut(s)	319, 636
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	5 cut(s)	54, 102, 544, 591, 768
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	277, 740, 805
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	2 cut(s)	118, 896
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	4 cut(s)	414, 796, 804, 888
CviAII	CATG	5 cut(s)	163, 202, 334, 877, 937
CviQI	GTAC	4 cut(s)	414, 796, 804, 888
DdeI	CTNAG	2 cut(s)	352, 702
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	3 cut(s)	69, 321, 638
DpnII	GATC	3 cut(s)	67, 319, 636
EaeI	YGGCCR	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	942
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
FaeI	CATG	5 cut(s)	166, 205, 337, 880, 940
FatI	CATG	5 cut(s)	162, 201, 333, 876, 936
FauI	CCCGC	2 cut(s)	227, 464
Fnu4HI	GCNGC	6 cut(s)	143, 405, 465, 677, 897, 900
FokI	GGATG	5 cut(s)	61, 109, 551, 598, 775
Fsp4HI	GCNGC	6 cut(s)	143, 405, 465, 677, 897, 900
GlaI	GCGC	2 cut(s)	117, 895
GluI	GCNGC	6 cut(s)	143, 405, 465, 677, 897, 900
GsaI	CCCAGC	2 cut(s)	399, 726
HaeII	RGCGCY	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	78, 408
HhaI	GCGC	2 cut(s)	118, 896
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	5 cut(s)	166, 205, 337, 880, 940
Hin6I	GCGC	2 cut(s)	116, 894
HinP1I	GCGC	2 cut(s)	116, 894
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	2 cut(s)	192, 544
HpaII	CCGG	2 cut(s)	78, 408
HphI	GGTGA	2 cut(s)	97, 587
Hpy166II	GTNNAC	2 cut(s)	103, 377
Hpy188I	TCNGA	3 cut(s)	72, 646, 756
Hpy188III	TCNNGA	2 cut(s)	712, 928
Hpy8I	GTNNAC	2 cut(s)	103, 377
Hpy99I	CGWCG	1 cut(s)	923
HpyAV	CCTTC	4 cut(s)	177, 230, 300, 833
HpyCH4III	ACNGT	4 cut(s)	65, 226, 751, 800
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	8 cut(s)	103, 145, 213, 377, 449, 772, 866, 940
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 219, 267, 401, 946
HpyF3I	CTNAG	2 cut(s)	352, 702
HpySE526I	ACGT	1 cut(s)	688
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	5 cut(s)	166, 205, 337, 880, 940
HspAI	GCGC	2 cut(s)	116, 894
KasI	GGCGCC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	67, 319, 636
LmnI	GCTCC	3 cut(s)	80, 267, 342
Lsp1109I	GCAGC	5 cut(s)	129, 391, 451, 886, 908
LweI	GCATC	2 cut(s)	249, 759
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	3 cut(s)	520, 576, 709
MalI	GATC	3 cut(s)	69, 321, 638
MbiI	CCGCTC	2 cut(s)	83, 345
MboI	GATC	3 cut(s)	67, 319, 636
MboII	GAAGA	6 cut(s)	245, 269, 489, 557, 832, 835
MflI	RGATCY	2 cut(s)	319, 636
MhlI	GDGCHC	2 cut(s)	105, 379
MluCI	AATT	4 cut(s)	304, 385, 494, 649
Mly113I	GGCGCC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	186, 648
Mph1103I	ATGCAT	1 cut(s)	942
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	2 cut(s)	679, 899
MspI	CCGG	2 cut(s)	78, 408
MwoI	GCNNNNNNNGC	5 cut(s)	142, 219, 267, 401, 946
NarI	GGCGCC	1 cut(s)	116
NdeII	GATC	3 cut(s)	67, 319, 636
NlaIII	CATG	5 cut(s)	166, 205, 337, 880, 940
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	709
NsiI	ATGCAT	1 cut(s)	942
NspI	RCATGY	2 cut(s)	205, 337
OliI	CACNNNNGTG	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	388
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	192, 544
PflFI	GACNNNGTC	1 cut(s)	923
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	6 cut(s)	144, 406, 466, 678, 898, 901
PluTI	GGCGCC	1 cut(s)	119
PscI	ACATGT	1 cut(s)	333
PsiI	TTATAA	2 cut(s)	831, 956
Psp1406I	AACGTT	1 cut(s)	688
PspEI	GGTNACC	1 cut(s)	520
PspFI	CCCAGC	2 cut(s)	395, 722
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	2 cut(s)	319, 636
PsyI	GACNNNGTC	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	4 cut(s)	415, 797, 805, 889
RsaNI	GTAC	4 cut(s)	414, 796, 804, 888
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	6 cut(s)	143, 405, 465, 677, 897, 900
Sau3AI	GATC	3 cut(s)	67, 319, 636
Sau96I	GGNCC	1 cut(s)	186
ScaI	AGTACT	1 cut(s)	889
SduI	GDGCHC	2 cut(s)	105, 379
SetI	ASST	8 cut(s)	138, 353, 382, 565, 691, 719, 901, 927
SfaNI	GCATC	2 cut(s)	249, 759
SfcI	CTRYAG	1 cut(s)	143
SfoI	GGCGCC	1 cut(s)	117
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	304, 385, 494, 649
SsiI	CCGC	5 cut(s)	83, 220, 345, 457, 677
SspDI	GGCGCC	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	65, 226, 751, 800
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	3 cut(s)	499, 547, 653
TasI	AATT	4 cut(s)	304, 385, 494, 649
TatI	WGTACW	3 cut(s)	413, 795, 887
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	2 cut(s)	192, 544
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	3 cut(s)	277, 747, 805
TseFI	GTSAC	1 cut(s)	709
TseI	GCWGC	5 cut(s)	142, 404, 464, 896, 899
Tsp45I	GTSAC	1 cut(s)	709
TspDTI	ATGAA	5 cut(s)	379, 498, 644, 840, 925
TspRI	CASTG	3 cut(s)	277, 747, 805
Tth111I	GACNNNGTC	1 cut(s)	923
Van91I	CCANNNNNTGG	1 cut(s)	517
VneI	GTGCAC	2 cut(s)	101, 375
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	1 cut(s)	649
XceI	RCATGY	2 cut(s)	205, 337
ZrmI	AGTACT	1 cut(s)	889
Zsp2I	ATGCAT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.