Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014529

Physical Location & Seq

Genomic Coordinates Forward (+)

66794681 .. 66798508

Gene Structure 3828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGGGAAGATGATGGTGGCCCAGAAAATTCAGGGTCGAAGCAATCAGGGCCGCACGATTGGCTGACCAACTTCCACCGTGATCTGATGGCCGGGGCGGTGATGGGTGGGGTGGTGCACACGATTGTGGCTCCGATAGAGAGAGCCAAGCTGTTGCTGCAGACCCAAGAGAGCAATATGGCCATTCTTGGGGGAGGAAGGACCAAATTCAAGGGCATGTTGGATTGTATAGCCCGTACGGTTAGAGAAGAAGGCATCTTGTCTTTGTGGAGAGGCAATGGCAGCAGTGTTCTTCGTTATTACCCTTCCGTAGCTCTCAATTTTTCCCTCAAGGATCTTTATAGAAACATGTTAAGGAGCGGAAGCTTAGATGGTCATTTTTTGTCTGGTGCACCTGCCAATTTCATTGCTGGGGCTGCTGCTGGTTGTACAACATTGATTATAATATACCCCCTTGATATTGCACATACCCGCCTTGCTGCTGACATTGGAAGAAATGAAGCCCGTCAATTTCGAGGGATCTACCATTTCCTGGTTACCATTCGCCAGAAGGATGGGACTCGAGGCATTTACAGAGGTCTTCCTGCCTCGCTACAGGGGATGGTCGTTCACCGAGGACTTTATTTTGGAGGCTTCGATACAATGAAAGAGATCTTATCAGAAAATTCGAAGAAACATGAGCTGGAGTTGCCAATGTGGAAACGTTGGGTAGTGGCTCAGGCAGTCACGACCTCTGCTGGATTGCTGTCATATCCACTGGATACAGTTCGGAGGAGGATGATGATGCAGTCTGGCTTGGAACAGCAGATGTACAGCGGTACTCTGGACTGCTGGAAGAAGATTTATAGGAAAGAAGGGGTAGTTTCATTTTATCGTGGTGCAGTTTCTAACATGGTTAGGAGTACTGGCGCAGCTGCCATCTTGGTTTTATACGACGAGGTCAAGAAGTTGATGCATTGGGGCAGATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000295 GO:0003006 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009791 GO:0009908 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022414 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046902 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071840 GO:0090559 GO:0090567 GO:0098656 GO:0099402 GO:0099516 GO:1901264 GO:1901505 GO:1901679

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

323

Amino Acids

35.95

Weight (kDa)

9.72

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	24 - 120	4.4e-21	Mitochondrial carrier protein
Mito_carr	PF00153	132 - 222	5.2e-19	Mitochondrial carrier protein
Mito_carr	PF00153	230 - 319	7.6e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56450
fragaria_vesca	FvH4_2g31710
malus_domestica	MD08G1063700.v1.1 MD15G1057900.v1.1
prunus_persica	Prupe.1G410600_v2.0.a1
pyrus_communis	pycom08g05240 pycom15g05450
rosa_chinensis	RchiOBHm_Chr6g0311111
rosa_laevigata	RLG00000010434
rosa_multiflora	Rmu_sc0008967.1_g000005
rosa_roxburghii	Rroxscaffold_7G00158010
rosa_rugosa	Rorug06G0385600
rosa_samantha	Rh6AG499600 Rh6BG510200 Rh6CG516000 Rh6DG502500
rosa_wichuraiana	Rw6G043520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	443, 970
AarI	CACCTGC	1 cut(s)	403
Acc36I	ACCTGC	1 cut(s)	403
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	360
AciI	CCGC	5 cut(s)	53, 98, 360, 472, 816
AclI	AACGTT	1 cut(s)	703
AclWI	GGATC	2 cut(s)	342, 527
AcoI	YGGCCR	2 cut(s)	90, 180
AcsI	RAATTY	3 cut(s)	28, 206, 664
AfaI	GTAC	5 cut(s)	238, 430, 812, 820, 904
AfiI	CCNNNNNNNGG	2 cut(s)	189, 532
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	531
AleI	CACNNNNGTG	1 cut(s)	125
AluBI	AGCT	5 cut(s)	151, 314, 366, 682, 914
AluI	AGCT	5 cut(s)	151, 314, 366, 682, 914
Alw21I	GWGCWC	2 cut(s)	120, 394
Alw44I	GTGCAC	2 cut(s)	116, 390
AlwI	GGATC	2 cut(s)	342, 527
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	4 cut(s)	19, 50, 90, 180
ApaLI	GTGCAC	2 cut(s)	116, 390
ApeKI	GCWGC	7 cut(s)	157, 282, 416, 419, 479, 911, 914
ApoI	RAATTY	3 cut(s)	28, 206, 664
AspLEI	GCGC	1 cut(s)	911
AspS9I	GGNCC	3 cut(s)	20, 50, 201
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	112, 602
AsuII	TTCGAA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	1 cut(s)	201
BaeGI	GKGCMC	2 cut(s)	120, 394
BalI	TGGCCA	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	2 cut(s)	120, 394
BbvI	GCAGC	7 cut(s)	144, 294, 403, 406, 466, 901, 923
BccI	CCATC	7 cut(s)	8, 82, 97, 365, 548, 595, 926
BciT130I	CCWGG	1 cut(s)	533
BciVI	GTATCC	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	94
BfmI	CTRYAG	2 cut(s)	158, 593
BfuAI	ACCTGC	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	754
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	8 cut(s)	53, 158, 283, 417, 420, 480, 912, 915
BlsI	GCNGC	8 cut(s)	54, 159, 284, 418, 421, 481, 913, 916
BmcAI	AGTACT	1 cut(s)	904
Bme1390I	CCNGG	2 cut(s)	94, 533
Bme18I	GGWCC	1 cut(s)	201
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	3 cut(s)	20, 50, 201
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	94, 533
BmsI	GCATC	3 cut(s)	264, 774, 942
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	717
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	93, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 532
Bse1I	ACTGG	2 cut(s)	762, 910
Bse3DI	GCAATG	2 cut(s)	283, 405
BseBI	CCWGG	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	93, 613
BseGI	GGATG	3 cut(s)	559, 606, 783
BseLI	CCNNNNNNNGG	2 cut(s)	189, 532
BseMI	GCAATG	2 cut(s)	283, 405
BseMII	CTCAG	1 cut(s)	731
BseNI	ACTGG	2 cut(s)	762, 910
BseRI	GAGGAG	1 cut(s)	787
BseSI	GKGCMC	2 cut(s)	120, 394
BseXI	GCAGC	7 cut(s)	144, 294, 403, 406, 466, 901, 923
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	900
BshFI	GGCC	4 cut(s)	21, 52, 92, 182
BsiHKAI	GWGCWC	2 cut(s)	120, 394
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	93
BsiWI	CGTACG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	189, 532
BsmFI	GGGAC	1 cut(s)	571
BsnI	GGCC	4 cut(s)	21, 52, 92, 182
BsoBI	CYCGRG	1 cut(s)	561
Bsp119I	TTCGAA	1 cut(s)	668
Bsp1286I	GDGCHC	2 cut(s)	120, 394
Bsp1407I	TGTACA	2 cut(s)	428, 810
Bsp143I	GATC	4 cut(s)	82, 334, 519, 651
BspACI	CCGC	5 cut(s)	53, 98, 360, 472, 816
BspANI	GGCC	4 cut(s)	21, 52, 92, 182
BspCNI	CTCAG	1 cut(s)	730
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	342, 527
BspT104I	TTCGAA	1 cut(s)	668
BsrBI	CCGCTC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	283, 405
BsrGI	TGTACA	2 cut(s)	428, 810
BsrI	ACTGG	2 cut(s)	762, 910
BssECI	CCNNGG	2 cut(s)	93, 613
BssMI	GATC	4 cut(s)	82, 334, 519, 651
Bst2UI	CCWGG	1 cut(s)	533
Bst4CI	ACNGT	3 cut(s)	80, 241, 766
BstAUI	TGTACA	2 cut(s)	428, 810
BstBI	TTCGAA	1 cut(s)	668
BstDEI	CTNAG	2 cut(s)	367, 717
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	3 cut(s)	559, 606, 783
BstHHI	GCGC	1 cut(s)	911
BstKTI	GATC	4 cut(s)	85, 337, 522, 654
BstMBI	GATC	4 cut(s)	82, 334, 519, 651
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 61, 157, 282, 416, 688
BstNI	CCWGG	1 cut(s)	533
BstNSI	RCATGY	2 cut(s)	220, 352
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	2 cut(s)	92, 531
BstSFI	CTRYAG	2 cut(s)	158, 593
BstSLI	GKGCMC	2 cut(s)	120, 394
BstV1I	GCAGC	7 cut(s)	144, 294, 403, 406, 466, 901, 923
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	3 cut(s)	334, 519, 651
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	3 cut(s)	334, 519, 651
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	4 cut(s)	21, 52, 92, 182
BtsCI	GGATG	3 cut(s)	559, 606, 783
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 755
BveI	ACCTGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	911
Cfr13I	GGNCC	3 cut(s)	20, 50, 201
Csp6I	GTAC	5 cut(s)	237, 429, 811, 819, 903
CviAII	CATG	4 cut(s)	217, 349, 677, 892
CviQI	GTAC	5 cut(s)	237, 429, 811, 819, 903
DdeI	CTNAG	2 cut(s)	367, 717
DpnI	GATC	4 cut(s)	84, 336, 521, 653
DpnII	GATC	4 cut(s)	82, 334, 519, 651
EaeI	YGGCCR	2 cut(s)	90, 180
Eco47I	GGWCC	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	561
Eco91I	GGTNACC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	957
FaeI	CATG	4 cut(s)	220, 352, 680, 895
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	4 cut(s)	216, 348, 676, 891
FauI	CCCGC	1 cut(s)	479
Fnu4HI	GCNGC	8 cut(s)	53, 158, 283, 417, 420, 480, 912, 915
FokI	GGATG	3 cut(s)	566, 613, 790
Fsp4HI	GCNGC	8 cut(s)	53, 158, 283, 417, 420, 480, 912, 915
GlaI	GCGC	1 cut(s)	910
GluI	GCNGC	8 cut(s)	53, 158, 283, 417, 420, 480, 912, 915
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	21, 52, 92, 182
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	911
Hin1II	CATG	4 cut(s)	220, 352, 680, 895
Hin6I	GCGC	1 cut(s)	909
HinP1I	GCGC	1 cut(s)	909
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	112, 602
Hpy166II	GTNNAC	3 cut(s)	118, 392, 610
Hpy188I	TCNGA	4 cut(s)	87, 135, 661, 771
Hpy188III	TCNNGA	3 cut(s)	727, 824, 943
Hpy8I	GTNNAC	3 cut(s)	118, 392, 610
Hpy99I	CGWCG	1 cut(s)	938
HpyAV	CCTTC	5 cut(s)	192, 245, 315, 544, 848
HpyCH4III	ACNGT	3 cut(s)	80, 241, 766
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	7 cut(s)	118, 160, 392, 464, 787, 881, 955
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 61, 157, 282, 416, 688
HpyF3I	CTNAG	2 cut(s)	367, 717
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	4 cut(s)	220, 352, 680, 895
HspAI	GCGC	1 cut(s)	909
Kzo9I	GATC	4 cut(s)	82, 334, 519, 651
LmnI	GCTCC	2 cut(s)	136, 357
Lsp1109I	GCAGC	7 cut(s)	144, 294, 403, 406, 466, 901, 923
LweI	GCATC	3 cut(s)	264, 774, 942
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	2 cut(s)	535, 724
MalI	GATC	4 cut(s)	84, 336, 521, 653
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	4 cut(s)	82, 334, 519, 651
MboII	GAAGA	8 cut(s)	20, 260, 284, 504, 572, 682, 847, 850
MflI	RGATCY	3 cut(s)	334, 519, 651
MhlI	GDGCHC	2 cut(s)	120, 394
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	6 cut(s)	28, 206, 319, 400, 509, 664
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	553
MmeI	TCCRAC	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	957
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	1 cut(s)	353
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	816, 914
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	94, 533
MvaI	CCWGG	1 cut(s)	533
MwoI	GCNNNNNNNGC	6 cut(s)	49, 61, 157, 282, 416, 688
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	82, 334, 519, 651
NlaIII	CATG	4 cut(s)	220, 352, 680, 895
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	724
NsiI	ATGCAT	1 cut(s)	957
NspI	RCATGY	2 cut(s)	220, 352
NspV	TTCGAA	1 cut(s)	668
OliI	CACNNNNGTG	1 cut(s)	125
PaeR7I	CTCGAG	1 cut(s)	561
PaqCI	CACCTGC	1 cut(s)	403
PciI	ACATGT	1 cut(s)	348
Pfl23II	CGTACG	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	938
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	8 cut(s)	54, 159, 284, 418, 421, 481, 913, 916
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PscI	ACATGT	1 cut(s)	348
PsiI	TTATAA	2 cut(s)	443, 970
Psp1406I	AACGTT	1 cut(s)	703
Psp6I	CCWGG	1 cut(s)	531
PspEI	GGTNACC	1 cut(s)	535
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	531
PspLI	CGTACG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	3 cut(s)	20, 50, 201
PspXI	VCTCGAGB	1 cut(s)	561
PstI	CTGCAG	1 cut(s)	162
PsuI	RGATCY	3 cut(s)	334, 519, 651
PsyI	GACNNNGTC	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	5 cut(s)	238, 430, 812, 820, 904
RsaNI	GTAC	5 cut(s)	237, 429, 811, 819, 903
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	8 cut(s)	53, 158, 283, 417, 420, 480, 912, 915
Sau3AI	GATC	4 cut(s)	82, 334, 519, 651
Sau96I	GGNCC	3 cut(s)	20, 50, 201
ScaI	AGTACT	1 cut(s)	904
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	2 cut(s)	94, 533
SduI	GDGCHC	2 cut(s)	120, 394
SfaNI	GCATC	3 cut(s)	264, 774, 942
SfcI	CTRYAG	2 cut(s)	158, 593
Sfr274I	CTCGAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	2 cut(s)	329, 561
SmoI	CTYRAG	2 cut(s)	329, 561
Sse9I	AATT	6 cut(s)	28, 206, 319, 400, 509, 664
SsiI	CCGC	5 cut(s)	53, 98, 360, 472, 816
StyD4I	CCNGG	2 cut(s)	92, 531
TaaI	ACNGT	3 cut(s)	80, 241, 766
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	5 cut(s)	38, 514, 562, 636, 668
TasI	AATT	6 cut(s)	28, 206, 319, 400, 509, 664
TatI	WGTACW	3 cut(s)	428, 810, 902
TauI	GCSGC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	2 cut(s)	292, 762
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	7 cut(s)	157, 282, 416, 419, 479, 911, 914
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	4 cut(s)	394, 513, 659, 855
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	292, 762
Tth111I	GACNNNGTC	1 cut(s)	938
Van91I	CCANNNNNTGG	1 cut(s)	532
VneI	GTGCAC	2 cut(s)	116, 390
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	3 cut(s)	28, 206, 664
XceI	RCATGY	2 cut(s)	220, 352
XhoI	CTCGAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	904
Zsp2I	ATGCAT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.